Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0031086

Physical Location & Seq

Genomic Coordinates Reverse (-)

111928 .. 115986

Gene Structure 4059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggttttctcagtaaagtctccaagctccgtgctagggctcggagtcataaaaagctcaagaagaacaagcagctacagactgtggagataaaagtgatggactgcgaaggttgcgagagaagagtgaagaaatcagtggacggcatgaaaggagtcacgagtgttgaagtggatcccaagcaaagcaagctcactgtcattggctatgtgaaccccaacaaggtgttgcatcgtgtcaggcatcgaacggggaagaaggcggatctgtggccgtatgtaccatacgacgtcgtcgagcatccatgggctcccggggcttatgataggaagaaatctaatgcttttcttacccatgcaggagcctgtgaaggttcacttgcctgttcaacatgtcatgtgattttaatggacgtggaatattacaacaaattagaagacccaactgatgaggaaaatgatatgttggacttggcatttggacttacagaaacgtctcgtctgggttgcctagtcattgcaatccctgaacttgatggagttcgtttagctattcctgctgccacccgaaattttgctgttgatggctttgtaccaaaaccacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

202

Amino Acids

22.56

Weight (kDa)

9.07

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031086)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000600.1_g000015
rosa_samantha	Rh4AG141900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	3 cut(s)	170, 183, 273
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	282, 594
AfiI	CCNNNNNNNGG	2 cut(s)	37, 223
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	170, 390
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	5 cut(s)	28, 58, 76, 193, 551
AluI	AGCT	5 cut(s)	28, 58, 76, 193, 551
Alw26I	GTCTC	2 cut(s)	25, 501
AlwI	GGATC	3 cut(s)	170, 183, 273
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	73, 560
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AsuC2I	CCSGG	2 cut(s)	315, 316
AvaI	CYCGRG	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	43, 313
BauI	CACGAG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	85, 547
BccI	CCATC	3 cut(s)	94, 530, 578
BceAI	ACGGC	2 cut(s)	160, 259
BcnI	CCSGG	2 cut(s)	315, 316
BcoDI	GTCTC	2 cut(s)	25, 501
BfaI	CTAG	3 cut(s)	36, 512, 607
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	74, 561
BlsI	GCNGC	2 cut(s)	75, 562
Bme1390I	CCNGG	2 cut(s)	315, 316
BmeT110I	CYCGRG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	3 cut(s)	177, 312, 364
BmrFI	CCNGG	2 cut(s)	315, 316
BmsI	GCATC	3 cut(s)	241, 253, 310
BpiI	GAAGAC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	315, 316
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	305, 314, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 223
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	305, 314, 315
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	37, 223
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	85, 547
BshFI	GGCC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	37, 223
BsmAI	GTCTC	2 cut(s)	25, 501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	43, 313
Bsp143I	GATC	2 cut(s)	175, 265
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	177, 312, 364
BspPI	GGATC	3 cut(s)	170, 183, 273
BsrDI	GCAATG	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	305, 314, 315
BssMI	GATC	2 cut(s)	175, 265
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	85, 199
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	178, 268
BstMAI	GTCTC	2 cut(s)	25, 501
BstMBI	GATC	2 cut(s)	175, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 190, 317, 557
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	313, 314
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	85, 547
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	175, 265
BstYI	RGATCY	2 cut(s)	175, 265
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	144, 195
Cac8I	GCNNGC	1 cut(s)	191
Cfr9I	CCCGGG	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	281, 593
CviAII	CATG	5 cut(s)	148, 306, 356, 393, 398
CviQI	GTAC	2 cut(s)	281, 593
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	177, 267
DpnII	GATC	2 cut(s)	175, 265
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	43, 313
Eco88I	CYCGRG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	2 cut(s)	43, 313
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	5 cut(s)	151, 309, 359, 396, 401
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	5 cut(s)	147, 305, 355, 392, 397
Fnu4HI	GCNGC	2 cut(s)	74, 561
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	2 cut(s)	43, 313
Fsp4HI	GCNGC	2 cut(s)	74, 561
FspBI	CTAG	3 cut(s)	36, 512, 607
GluI	GCNGC	2 cut(s)	74, 561
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	151, 309, 359, 396, 401
HinfI	GANTC	2 cut(s)	46, 156
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	142, 214, 377
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	61, 160
Hpy8I	GTNNAC	3 cut(s)	142, 214, 377
Hpy99I	CGWCG	3 cut(s)	293, 296, 299
HpyAV	CCTTC	3 cut(s)	104, 253, 365
HpyCH4III	ACNGT	2 cut(s)	85, 199
HpyCH4IV	ACGT	3 cut(s)	291, 414, 494
HpyCH4V	TGCA	3 cut(s)	232, 359, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 190, 317, 557
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	3 cut(s)	291, 414, 494
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	151, 309, 359, 396, 401
Kzo9I	GATC	2 cut(s)	175, 265
LmnI	GCTCC	3 cut(s)	33, 316, 362
LpnPI	CCDG	8 cut(s)	226, 328, 345, 379, 397, 488, 540, 570
Lsp1109I	GCAGC	2 cut(s)	85, 547
LweI	GCATC	3 cut(s)	241, 253, 310
MaeI	CTAG	3 cut(s)	36, 512, 607
MaeII	ACGT	3 cut(s)	291, 414, 494
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	177, 267
MboI	GATC	2 cut(s)	175, 265
MboII	GAAGA	6 cut(s)	76, 135, 142, 268, 343, 449
MflI	RGATCY	2 cut(s)	175, 265
MhlI	GDGCHC	2 cut(s)	43, 313
MluCI	AATT	2 cut(s)	431, 571
MlyI	GAGTC	2 cut(s)	55, 165
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	1 cut(s)	445
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	315, 316
MwoI	GCNNNNNNNGC	4 cut(s)	114, 190, 317, 557
NciI	CCSGG	2 cut(s)	315, 316
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	175, 265
NlaIII	CATG	5 cut(s)	151, 309, 359, 396, 401
NlaIV	GGNNCC	3 cut(s)	177, 312, 364
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	396
PciI	ACATGT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	75, 562
PleI	GAGTC	2 cut(s)	54, 164
PpsI	GAGTC	2 cut(s)	54, 164
PscI	ACATGT	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	177, 312, 364
PsuI	RGATCY	2 cut(s)	175, 265
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	282, 594
RsaNI	GTAC	2 cut(s)	281, 593
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	74, 561
Sau3AI	GATC	2 cut(s)	175, 265
SchI	GAGTC	2 cut(s)	55, 165
ScrFI	CCNGG	2 cut(s)	315, 316
SduI	GDGCHC	2 cut(s)	43, 313
SfaNI	GCATC	3 cut(s)	241, 253, 310
SfcI	CTRYAG	1 cut(s)	77
SmaI	CCCGGG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	431, 571
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	3 cut(s)	36, 512, 607
StyD4I	CCNGG	2 cut(s)	313, 314
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	85, 199
TaiI	ACGT	3 cut(s)	294, 417, 497
TaqI	TCGA	2 cut(s)	247, 297
TasI	AATT	2 cut(s)	431, 571
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	144, 202
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	73, 560
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	20
TspMI	CCCGGG	1 cut(s)	314
TspRI	CASTG	2 cut(s)	144, 202
Tth111I	GACNNNGTC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	396
XmaI	CCCGGG	1 cut(s)	314
XspI	CTAG	3 cut(s)	36, 512, 607
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.