Rmu_sc0000605.1_g000047

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000605.1
OG0025485
Physical Location & Seq
Reverse (-)
188209 .. 188565
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000605.1_g000047.1.cds

Sequence Viewer

Length: 357 bp
atgttaaccaaccccaagaccagtcccagttccaatcccaaagaacaaactaattcccgatcacccaaaagtcagcgatggcggcagaaccaggtggcgacggccgtgatagccatcgcagtgctcttgatctccaccgccgtgtggctctctttggtgttcttcggcagttctccatcgcttatggtgtctgaggacatctctaggtttcagtacacaaacccgacatgtcacctatcggggatccgaatctctcggataattttcgaatgcttctgcctcatgcccaaaagccggtggtttgtgctcgcagatgacgacaccatcatcaacgctgacaacctcgtcgagtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

8.57

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025485)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000605.1_g000047
rosa_samantha Rh5BG454400 Rh5CG476700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AciI CCGC 2 cut(s) 82, 138
AclWI GGATC 2 cut(s) 238, 251
AcoI YGGCCR 1 cut(s) 102
AfaI GTAC 2 cut(s) 215, 353
AfiI CCNNNNNNNGG 2 cut(s) 144, 294
AflIII ACRYGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 140
Alw21I GWGCWC 2 cut(s) 126, 309
AlwI GGATC 2 cut(s) 238, 251
AoxI GGCC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 54, 224
AsuII TTCGAA 1 cut(s) 267
BamHI GGATCC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 126, 309
BccI CCATC 4 cut(s) 72, 122, 184, 332
BceAI ACGGC 3 cut(s) 89, 117, 125
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu14I TTCGAA 1 cut(s) 267
BsaBI GATNNNNATC 2 cut(s) 113, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 294
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 21, 27
Bse8I GATNNNNATC 2 cut(s) 113, 248
BseBI CCWGG 1 cut(s) 92
BseJI GATNNNNATC 2 cut(s) 113, 248
BseLI CCNNNNNNNGG 2 cut(s) 144, 294
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 21, 27
BseX3I CGGCCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 126, 309
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 144, 294
BsmFI GGGAC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 126, 309
Bsp143I GATC 3 cut(s) 59, 129, 243
BspACI CCGC 2 cut(s) 82, 138
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 2 cut(s) 238, 251
BspT104I TTCGAA 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 2 cut(s) 21, 27
BssAI RCCGGY 1 cut(s) 294
BssMI GATC 3 cut(s) 59, 129, 243
Bst2UI CCWGG 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 3 cut(s) 62, 132, 246
BstMBI GATC 3 cut(s) 59, 129, 243
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 82, 110
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 3 cut(s) 91, 100, 162
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 2 cut(s) 214, 352
CviAII CATG 2 cut(s) 228, 283
CviJI RGCY 4 cut(s) 104, 113, 148, 294
CviKI_1 RGCY 4 cut(s) 104, 113, 148, 294
CviQI GTAC 2 cut(s) 214, 352
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 61, 131, 245
DpnII GATC 3 cut(s) 59, 129, 243
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 102
Eco52I CGGCCG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 231, 286
FaiI YATR 3 cut(s) 185, 229, 284
FaqI GGGAC 1 cut(s) 9
FatI CATG 2 cut(s) 227, 282
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 295
Hin1II CATG 2 cut(s) 231, 286
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 1 cut(s) 295
HphI GGTGA 2 cut(s) 54, 224
Hpy166II GTNNAC 2 cut(s) 6, 216
Hpy188I TCNGA 3 cut(s) 193, 248, 258
Hpy188III TCNNGA 2 cut(s) 57, 127
Hpy8I GTNNAC 2 cut(s) 6, 216
Hpy99I CGWCG 2 cut(s) 103, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 110
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 2 cut(s) 231, 286
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 59, 129, 243
LpnPI CCDG 5 cut(s) 34, 40, 77, 104, 308
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 61, 131, 245
MboI GATC 3 cut(s) 59, 129, 243
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 126, 309
MluCI AATT 2 cut(s) 52, 261
MnlI CCTC 3 cut(s) 187, 290, 353
MseI TTAA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 119, 140
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 82, 110
NdeII GATC 3 cut(s) 59, 129, 243
NlaIII CATG 2 cut(s) 231, 286
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 231
NspV TTCGAA 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 140
PciI ACATGT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 84
PscI ACATGT 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 2 cut(s) 215, 353
RsaNI GTAC 2 cut(s) 214, 352
RseI CAYNNNNRTG 2 cut(s) 119, 140
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 3 cut(s) 59, 129, 243
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 126, 309
SetI ASST 4 cut(s) 96, 209, 237, 345
SexAI ACCWGGT 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 119, 140
Sse9I AATT 2 cut(s) 52, 261
SsiI CCGC 2 cut(s) 82, 138
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 90
TaqI TCGA 2 cut(s) 267, 348
TasI AATT 2 cut(s) 52, 261
TatI WGTACW 2 cut(s) 213, 351
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspRI CASTG 1 cut(s) 126
XceI RCATGY 1 cut(s) 231
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.