Rmu_sc0000614.1_g000002

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000614.1
OG0023051
Physical Location & Seq
Forward (+)
9719 .. 12551
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
atggctgttcctcgagtaaacaagaaattgcttcaagagcttgaatcaattgcccacagctcgggcaactcgggctcttcattattcggattcaactctgtagtttggcaattatggttcttttgtgttgttttaccaggtactgctagcttagaggcttgtatagactggatcattggtcacgagaatgacccggacattgatcagattcccttggtaacagtagacattgatattgaatctccagagccattccatatcaccgaggcaatgaaaataaaagcacaagagttaagggatcaaacacgcaagaagagtaaagaagaagaaaagaaactggaattacaaatggaacgagaaagagagaaggataggattcgatctggtaaggaactcatggaagcaaagcaaatcttagaagacaatgaaagaaaacgtaatatagtgtttcggaattctgagaaagaggaagagaaacgagcaagagagagaattcgctggaaactagaacaagataaggtgctttgcaacatgctttcattttttgcttttaataatatgctttcagaggatcaaacactcaagaagaggaaagaagaagaaaagaaactggaattacaaatggaacgagaaagggagaagggtgagattctggctccagactcctctggtcaaatggtttatgggaagtctttgcccctgccaatggacagccttacttgtctccgcacactcatggctcgtgacctcactctcactgccctcagagagcttagggacagatttggtggattggttgctagtgggccttttctgcgaagtgttgaaattggcattacatacaatgaagttgccattgaagcggacatgaatagcttgagaagattttacttgatcgatgtccaaactgtgaatgatatcaacaaagtgatctggttcaagcaacagacagattggaatggagaagtgaatgtttggatcggtgaagcaaaagatgagataactgaccttgcagaagcagctgggatgatcctgaagaagtcattcatgatcttgaagttgaagaagactagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

358

Amino Acids

41.6

Weight (kDa)

5.65

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023051)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000614.1_g000002
rosa_samantha Rh6AG275600 Rh6CG278000 Rh6DG270800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 727, 863
AclWI GGATC 5 cut(s) 179, 306, 579, 986, 1024
AcsI RAATTY 2 cut(s) 454, 492
AcuI CTGAAG 1 cut(s) 1055
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 61, 706
AgsI TTSAA 9 cut(s) 35, 44, 94, 239, 827, 860, 940, 1057, 1063
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 6 cut(s) 40, 60, 150, 772, 876, 1022
AluI AGCT 6 cut(s) 40, 60, 150, 772, 876, 1022
Alw26I GTCTC 1 cut(s) 728
AlwI GGATC 5 cut(s) 179, 306, 579, 986, 1024
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 3 cut(s) 12, 61, 70
AoxI GGCC 1 cut(s) 806
ApeKI GCWGC 1 cut(s) 1019
ApoI RAATTY 2 cut(s) 454, 492
Asp700I GAANNNNTTC 1 cut(s) 1043
AspS9I GGNCC 1 cut(s) 806
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 253, 656, 995
AsuNHI GCTAGC 1 cut(s) 146
AvaI CYCGRG 3 cut(s) 12, 61, 70
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 2 cut(s) 182, 741
BbsI GAAGAC 2 cut(s) 426, 1073
BbvI GCAGC 1 cut(s) 1031
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 4 cut(s) 147, 506, 801, 1071
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 1020
BlsI GCNGC 1 cut(s) 1021
Bme1390I CCNGG 2 cut(s) 138, 194
BmeT110I CYCGRG 3 cut(s) 12, 61, 70
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 2 cut(s) 138, 194
BmtI GCTAGC 1 cut(s) 150
BpiI GAAGAC 2 cut(s) 426, 1073
BpmI CTGGAG 2 cut(s) 228, 642
Bpu10I CCTNAGC 1 cut(s) 773
BpuEI CTTGAG 2 cut(s) 566, 898
BpuMI CCSGG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 897
BsaJI CCNNGG 2 cut(s) 213, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 706
Bse1I ACTGG 3 cut(s) 173, 342, 615
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 2 cut(s) 213, 264
BseGI GGATG 1 cut(s) 1032
BseLI CCNNNNNNNGG 2 cut(s) 61, 706
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 450, 778
BseNI ACTGG 3 cut(s) 173, 342, 615
BseRI GAGGAG 1 cut(s) 655
BseXI GCAGC 1 cut(s) 1031
BseYI CCCAGC 1 cut(s) 1022
BshFI GGCC 1 cut(s) 808
BshVI ATCGAT 1 cut(s) 897
BsiHKCI CYCGRG 3 cut(s) 12, 61, 70
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 2 cut(s) 61, 706
BsmAI GTCTC 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 791
BsnI GGCC 1 cut(s) 808
BsoBI CYCGRG 3 cut(s) 12, 61, 70
Bsp1286I GDGCHC 1 cut(s) 77
BspACI CCGC 2 cut(s) 727, 863
BspANI GGCC 1 cut(s) 808
BspCNI CTCAG 2 cut(s) 451, 777
BspDI ATCGAT 1 cut(s) 897
BspHI TCATGA 1 cut(s) 1047
BspLI GGNNCC 1 cut(s) 657
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 5 cut(s) 179, 306, 579, 986, 1024
BspQI GCTCTTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 3 cut(s) 173, 342, 615
BssECI CCNNGG 2 cut(s) 213, 264
BssSI CACGAG 2 cut(s) 182, 741
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 2 cut(s) 182, 741
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 223, 910
Bst6I CTCTTC 4 cut(s) 82, 308, 465, 581
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 5 cut(s) 151, 415, 459, 764, 773
BstF5I GGATG 1 cut(s) 1032
BstMAI GTCTC 1 cut(s) 728
BstMWI GCNNNNNNNGC 5 cut(s) 37, 72, 814, 860, 1019
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 136, 192
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 1031
BstV2I GAAGAC 2 cut(s) 426, 1073
Bsu15I ATCGAT 1 cut(s) 897
BsuRI GGCC 1 cut(s) 808
BsuTUI ATCGAT 1 cut(s) 897
BtsCI GGATG 1 cut(s) 1032
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 1047
Cfr13I GGNCC 1 cut(s) 806
ClaI ATCGAT 1 cut(s) 897
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 1 cut(s) 141
CviAII CATG 5 cut(s) 397, 532, 736, 868, 1048
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 5 cut(s) 151, 415, 459, 764, 773
Eam1104I CTCTTC 4 cut(s) 82, 308, 465, 581
EarI CTCTTC 4 cut(s) 82, 308, 465, 581
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 919
Eco57I CTGAAG 1 cut(s) 1055
Eco88I CYCGRG 3 cut(s) 12, 61, 70
EcoRI GAATTC 2 cut(s) 454, 492
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 400, 535, 739, 871, 1051
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 791
FatI CATG 5 cut(s) 396, 531, 735, 867, 1047
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 1020
FokI GGATG 1 cut(s) 1039
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 1020
FspBI CTAG 4 cut(s) 147, 506, 801, 1071
GluI GCNGC 1 cut(s) 1020
GsaI CCCAGC 1 cut(s) 1026
GsuI CTGGAG 2 cut(s) 228, 642
HaeIII GGCC 1 cut(s) 808
HapII CCGG 1 cut(s) 194
Hin1II CATG 5 cut(s) 400, 535, 739, 871, 1051
HinfI GANTC 7 cut(s) 44, 90, 208, 239, 376, 649, 662
HpaII CCGG 1 cut(s) 194
HphI GGTGA 3 cut(s) 253, 656, 995
Hpy166II GTNNAC 2 cut(s) 19, 226
Hpy188I TCNGA 6 cut(s) 89, 207, 453, 460, 568, 767
Hpy188III TCNNGA 9 cut(s) 35, 182, 245, 583, 659, 743, 1033, 1048, 1054
Hpy8I GTNNAC 2 cut(s) 19, 226
HpyAV CCTTC 2 cut(s) 361, 634
HpyCH4III ACNGT 2 cut(s) 223, 910
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 2 cut(s) 528, 1013
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 72, 814, 860, 1019
HpyF3I CTNAG 5 cut(s) 151, 415, 459, 764, 773
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 5 cut(s) 400, 535, 739, 871, 1051
Ksp22I TGATCA 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 1 cut(s) 1031
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 4 cut(s) 147, 506, 801, 1071
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 3 cut(s) 179, 217, 743
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 8 cut(s) 26, 48, 110, 341, 454, 492, 614, 828
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 9 cut(s) 21, 148, 259, 460, 562, 582, 676, 758, 773
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 2 cut(s) 293, 552
MslI CAYNNNNRTG 2 cut(s) 186, 734
MspA1I CMGCKG 1 cut(s) 1022
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 138, 194
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 5 cut(s) 37, 72, 814, 860, 1019
NciI CCSGG 1 cut(s) 194
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 400, 535, 739, 871, 1051
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 2 cut(s) 179, 743
NspI RCATGY 1 cut(s) 535
PaeR7I CTCGAG 1 cut(s) 12
PagI TCATGA 1 cut(s) 1047
PciSI GCTCTTC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 6 cut(s) 44, 90, 208, 239, 376, 649
PkrI GCNGC 1 cut(s) 1021
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 1022
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 1 cut(s) 806
PspXI VCTCGAGB 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 2 cut(s) 186, 734
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 293, 552
SatI GCNGC 1 cut(s) 1020
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 138, 194
SduI GDGCHC 1 cut(s) 77
SexAI ACCWGGT 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 2 cut(s) 186, 734
SmlI CTYRAG 3 cut(s) 12, 581, 877
SmoI CTYRAG 3 cut(s) 12, 581, 877
Sse9I AATT 8 cut(s) 26, 48, 110, 341, 454, 492, 614, 828
SsiI CCGC 2 cut(s) 727, 863
SspMI CTAG 4 cut(s) 147, 506, 801, 1071
StyD4I CCNGG 2 cut(s) 136, 192
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 223, 910
TaiI ACGT 1 cut(s) 439
TaqI TCGA 3 cut(s) 13, 379, 897
TasI AATT 8 cut(s) 26, 48, 110, 341, 454, 492, 614, 828
TfiI GAWTC 6 cut(s) 44, 90, 208, 239, 376, 649
Tru1I TTAA 2 cut(s) 293, 552
Tru9I TTAA 2 cut(s) 293, 552
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 2 cut(s) 179, 743
TseI GCWGC 1 cut(s) 1019
Tsp45I GTSAC 2 cut(s) 179, 743
TspDTI ATGAA 7 cut(s) 69, 287, 441, 528, 861, 884, 1036
TspRI CASTG 1 cut(s) 763
XapI RAATTY 2 cut(s) 454, 492
XceI RCATGY 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 1043
XspI CTAG 4 cut(s) 147, 506, 801, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.