Rh6CG278000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
45426361 .. 45447698
21338 bp
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UTR
Exon/CDS
Intron
Rh6CG278000.1

Sequence Viewer

Length: 372 bp
ATGGACAGCCTTACTTGTCTCCGCACACTCATGGCTCGTGACCTCACTCTCACTGCCCTCAGAGAGCTAAGGGACAGATTTGGTGGATTGGTTGCTAGTGGGCCTTTTCTGCGAAGTGTTGAAATTGGCATTACATACAATGAAGTTGCCATTGAAGCGGACATGAATAGCTTGAGAAGATTTTACTTGATCGATGTCCAAACTGTGAATGATATCAACAAAGTGATCTGGTTCAAGCAACAGACAGATTGGAATGGAGAAGTGAATGTTTGGATCGGTGAAGCAAAAGATGAGATAACTGACCTTGCAGAAGCAGCTGGGATGATCCTGAAGAAGTCATTCATGATCTTGAAGTTGAAGAAGACTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

6.29

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023051)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000614.1_g000002
rosa_samantha Rh6AG275600 Rh6CG278000 Rh6DG270800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 158
AclWI GGATC 2 cut(s) 281, 319
AcuI CTGAAG 1 cut(s) 350
AgsI TTSAA 5 cut(s) 122, 155, 235, 352, 358
AluBI AGCT 3 cut(s) 67, 171, 317
AluI AGCT 3 cut(s) 67, 171, 317
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 281, 319
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 290
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 96, 366
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 192
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 5 cut(s) 189, 225, 273, 324, 345
BspACI CCGC 2 cut(s) 22, 158
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 192
BspHI TCATGA 1 cut(s) 342
BspPI GGATC 2 cut(s) 281, 319
BssMI GATC 5 cut(s) 189, 225, 273, 324, 345
BssSI CACGAG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 59, 68
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 5 cut(s) 192, 228, 276, 327, 348
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 189, 225, 273, 324, 345
BstMWI GCNNNNNNNGC 3 cut(s) 109, 155, 314
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
CciI TCATGA 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 192
CviAII CATG 3 cut(s) 31, 163, 343
CviJI RGCY 6 cut(s) 9, 35, 67, 103, 171, 317
CviKI_1 RGCY 6 cut(s) 9, 35, 67, 103, 171, 317
DdeI CTNAG 2 cut(s) 59, 68
DpnI GATC 5 cut(s) 191, 227, 275, 326, 347
DpnII GATC 5 cut(s) 189, 225, 273, 324, 345
Eco32I GATATC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 214
FaeI CATG 3 cut(s) 34, 166, 346
FaiI YATR 4 cut(s) 32, 136, 164, 344
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 30, 162, 342
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 96, 366
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 103
Hin1II CATG 3 cut(s) 34, 166, 346
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 4 cut(s) 38, 328, 343, 349
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 155, 314
HpyF3I CTNAG 2 cut(s) 59, 68
Hsp92II CATG 3 cut(s) 34, 166, 346
Kzo9I GATC 5 cut(s) 189, 225, 273, 324, 345
LpnPI CCDG 3 cut(s) 214, 303, 341
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 96, 366
MaeIII GTNAC 1 cut(s) 38
MalI GATC 5 cut(s) 191, 227, 275, 326, 347
MboI GATC 5 cut(s) 189, 225, 273, 324, 345
MboII GAAGA 3 cut(s) 189, 343, 370
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 53, 68
MroXI GAANNNNTTC 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 109, 155, 314
NdeII GATC 5 cut(s) 189, 225, 273, 324, 345
NlaIII CATG 3 cut(s) 34, 166, 346
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 5 cut(s) 189, 225, 273, 324, 345
Sau96I GGNCC 1 cut(s) 101
SetI ASST 5 cut(s) 45, 69, 173, 306, 319
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 1 cut(s) 123
SsiI CCGC 2 cut(s) 22, 158
SspMI CTAG 2 cut(s) 96, 366
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 156, 179, 331
TspRI CASTG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 2 cut(s) 96, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.