Rh6DG270800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
46359943 .. 46360430
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG270800.1

Sequence Viewer

Length: 342 bp
ATGGCTCGTGACCTCACTCTCACTGCCCTCAGAGAGCTAAGGGACAGATTTGGTGGATTGGTTGCTAGTGGGCCTTTTCTGCGAAGTGTTGAAATTGGCATTACATACAATGAAGTTGCCATTGAAGCGGACATGAATAGCTTGAGAAGATTTTACTTGATCGATGTCCAAACTGTGAATGATATCAACAAAGTGATCTGGTTCAAGCAACAGACAGATTGGAATGGAGAAGTGAATGTTTGGATCGGTGAAGCAAAAGATGAGATAACTGACCTTGCAGAAGCAGCTGGGATGATCCTGAAGAAGTCATTCATGATCTTGAAGTTGAAGAAGACTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.94

Weight (kDa)

6.28

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023051)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000614.1_g000002
rosa_samantha Rh6AG275600 Rh6CG278000 Rh6DG270800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 251, 289
AcuI CTGAAG 1 cut(s) 320
AgsI TTSAA 5 cut(s) 92, 125, 205, 322, 328
AluBI AGCT 3 cut(s) 37, 141, 287
AluI AGCT 3 cut(s) 37, 141, 287
AlwI GGATC 2 cut(s) 251, 289
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 260
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 296
BfaI CTAG 2 cut(s) 66, 336
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 162
BseGI GGATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 162
BslFI GGGAC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 5 cut(s) 159, 195, 243, 294, 315
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 162
BspHI TCATGA 1 cut(s) 312
BspPI GGATC 2 cut(s) 251, 289
BssMI GATC 5 cut(s) 159, 195, 243, 294, 315
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 29, 38
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 5 cut(s) 162, 198, 246, 297, 318
BstMBI GATC 5 cut(s) 159, 195, 243, 294, 315
BstMWI GCNNNNNNNGC 3 cut(s) 79, 125, 284
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 338
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 162
CviAII CATG 2 cut(s) 133, 313
CviJI RGCY 5 cut(s) 5, 37, 73, 141, 287
CviKI_1 RGCY 5 cut(s) 5, 37, 73, 141, 287
DdeI CTNAG 2 cut(s) 29, 38
DpnI GATC 5 cut(s) 161, 197, 245, 296, 317
DpnII GATC 5 cut(s) 159, 195, 243, 294, 315
Eco32I GATATC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 184
FaeI CATG 2 cut(s) 136, 316
FaiI YATR 3 cut(s) 106, 134, 314
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 132, 312
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 66, 336
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 136, 316
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 4 cut(s) 8, 298, 313, 319
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 125, 284
HpyF3I CTNAG 2 cut(s) 29, 38
Hsp92II CATG 2 cut(s) 136, 316
Kzo9I GATC 5 cut(s) 159, 195, 243, 294, 315
LpnPI CCDG 3 cut(s) 184, 273, 311
Lsp1109I GCAGC 1 cut(s) 296
MaeI CTAG 2 cut(s) 66, 336
MaeIII GTNAC 1 cut(s) 8
MalI GATC 5 cut(s) 161, 197, 245, 296, 317
MboI GATC 5 cut(s) 159, 195, 243, 294, 315
MboII GAAGA 3 cut(s) 159, 313, 340
MluCI AATT 1 cut(s) 93
MnlI CCTC 2 cut(s) 23, 38
MroXI GAANNNNTTC 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 79, 125, 284
NdeII GATC 5 cut(s) 159, 195, 243, 294, 315
NlaIII CATG 2 cut(s) 136, 316
NmuCI GTSAC 1 cut(s) 8
PagI TCATGA 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 287
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 5 cut(s) 159, 195, 243, 294, 315
Sau96I GGNCC 1 cut(s) 71
SetI ASST 5 cut(s) 15, 39, 143, 276, 289
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 93
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 66, 336
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 93
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 126, 149, 301
TspRI CASTG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 2 cut(s) 66, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.