Rmu_sc0000641.1_g000027

Transmembrane protein 131-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000641.1
OG0026732
Physical Location & Seq
Forward (+)
95969 .. 96481
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000641.1_g000027.1.cds

Sequence Viewer

Length: 318 bp
atgaaagctcgcagcatatttggattagagtggtctgaacccttagttacatttgcactttcttgtggaagctggtcctctcctgctggccaacgtgatcgaagtagaaggtctgcgaagttcaacagaaactccgaacaaaccaatttagacttcgaactcgtcactgaggagtccaccggcaatcaatttcgacttcgatcacgtccggggtgtccctggtctccgaggacagaaccagagccaccattggcgcctccccgagcctccgtgagcggcgtccgcacttttgcatcagttgcagacgtccgcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM131_like

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

10.03

Isoelectric Point (pI)

75.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026732)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37080
rosa_multiflora Rmu_sc0000641.1_g000027

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 253
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 3 cut(s) 276, 283, 310
AcoI YGGCCR 1 cut(s) 88
AcyI GRCGYC 3 cut(s) 254, 279, 306
AgsI TTSAA 1 cut(s) 124
AjiI CACGTC 1 cut(s) 206
AjnI CCWGG 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 8, 72
AluI AGCT 2 cut(s) 8, 72
Alw26I GTCTC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 75
BalI TGGCCA 1 cut(s) 90
BanI GGYRCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 220
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 2 cut(s) 13, 277
BlsI GCNGC 2 cut(s) 14, 278
Bme1390I CCNGG 2 cut(s) 210, 220
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 210, 220
BmsI GCATC 1 cut(s) 302
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 3 cut(s) 254, 279, 306
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 209, 218, 227
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 3 cut(s) 209, 218, 227
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 180, 209
BslFI GGGAC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 2 cut(s) 97, 200
BspACI CCGC 3 cut(s) 276, 283, 310
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 209, 218, 227
BssMI GATC 2 cut(s) 97, 200
BssNI GRCGYC 3 cut(s) 254, 279, 306
Bst2UI CCWGG 1 cut(s) 220
BstACI GRCGYC 3 cut(s) 254, 279, 306
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 10, 88
BstDEI CTNAG 2 cut(s) 43, 168
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 100, 203
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 97, 200
BstMWI GCNNNNNNNGC 2 cut(s) 282, 299
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 2 cut(s) 208, 218
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 90
BtrI CACGTC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 10, 88
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 75
CseI GACGC 1 cut(s) 268
CviJI RGCY 5 cut(s) 8, 72, 90, 244, 266
CviKI_1 RGCY 5 cut(s) 8, 72, 90, 244, 266
DdeI CTNAG 2 cut(s) 43, 168
DinI GGCGCC 1 cut(s) 255
DpnI GATC 2 cut(s) 99, 202
DpnII GATC 2 cut(s) 97, 200
EaeI YGGCCR 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 218
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 13, 277
Fsp4HI GCNGC 2 cut(s) 13, 277
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 13, 277
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 180, 209
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 3 cut(s) 254, 279, 306
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 1 cut(s) 173
HpaII CCGG 2 cut(s) 180, 209
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 4 cut(s) 37, 136, 228, 317
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 3 cut(s) 94, 205, 306
HpyCH4V TGCA 3 cut(s) 56, 293, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 299
HpyF3I CTNAG 2 cut(s) 43, 168
HpySE526I ACGT 3 cut(s) 94, 205, 306
Hsp92I GRCGYC 3 cut(s) 254, 279, 306
HspAI GCGC 1 cut(s) 254
KasI GGCGCC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 97, 200
LpnPI CCDG 8 cut(s) 58, 72, 96, 193, 205, 222, 232, 252
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 302
MaeII ACGT 3 cut(s) 94, 205, 306
MaeIII GTNAC 2 cut(s) 46, 163
MalI GATC 2 cut(s) 99, 202
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 97, 200
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 2 cut(s) 145, 188
MluNI TGGCCA 1 cut(s) 90
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 5 cut(s) 88, 163, 222, 267, 277
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 2 cut(s) 180, 209
MspR9I CCNGG 2 cut(s) 210, 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 282, 299
NarI GGCGCC 1 cut(s) 254
NciI CCSGG 1 cut(s) 210
NdeII GATC 2 cut(s) 97, 200
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 156
PkrI GCNGC 2 cut(s) 14, 278
PleI GAGTC 1 cut(s) 181
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 75
SatI GCNGC 2 cut(s) 13, 277
Sau3AI GATC 2 cut(s) 97, 200
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 210, 220
SetI ASST 6 cut(s) 10, 74, 97, 113, 208, 309
SfaNI GCATC 1 cut(s) 302
SfoI GGCGCC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 1 cut(s) 75
Sse9I AATT 2 cut(s) 145, 188
SsiI CCGC 3 cut(s) 276, 283, 310
SspDI GGCGCC 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 208, 218
TaiI ACGT 3 cut(s) 97, 208, 309
TaqI TCGA 4 cut(s) 100, 156, 193, 199
TasI AATT 2 cut(s) 145, 188
TauI GCSGC 1 cut(s) 279
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 75
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.