AT4G37080

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007088
Physical Location & Seq
Forward (+)
17472980 .. 17476979
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37080.2

Sequence Viewer

Length: 1794 bp
ATGATGTTTCGTGGTATTCTGAAATCTGCAAAGGATGAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAATTCAGGAAAATCTCTGGTTAATCGCCGACGAGCTAACAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAGCTTAAGAGGAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACTAGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATACATTGGAGCTTCTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAGGAGCAAGTTGTAAACTTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCAAAGAGGAATCTGGAGAGTCCTAATAACAACAGTTTGAATGAGAATTCGCCCGTTAGAAGCACTAAACACCAGAGATCGAAATCAATGTCGCAACACGAGTTCAATTCTATGATCACTCCCACTAAAAAGCATCAACAGTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGACCGAAGTGGTCAGAGAGTGGTAAGTGGCAAACAAGCGTCGCCTAAATCAAATCTAAGCAGTGTTACTAATACTAAGCCAGTAGATGTGAGAGGGAAAGAGAATCAGACCTCTAGTAATGCTTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATCTGTGAAGAAGAAGAAACCTTTGATTAAGCCGGAGGCTGCAGCGGATAAACACTCAGAATCAACCAAATTGCAGCTAGATGATAGATTAGCAGATCAGGACAAAGCTCAAGAGAGTGTGTCAGGATCATCTTCGGAAGACAAGACACTGCAAAGTGGAAATGTAGCAAACAGAGTTTCAGAGGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCCAAGGACATTGTGTTGGATCCATATAATAACTGCTCAGAGTGGAGAACAAGAGAACTTGGTGCATACAAGCATTTTTCGTCGGTCGATACATCTTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCTGATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAGCCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATGCATTCTTGGAGCACGGGATCCCGGCGACTCCTGAAATGGTTGTAGCGCTGATGCAGAAGGCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAAGCTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGCTGCAAAGAGAGATTATCTGCAAGCATCAGTTGGGATATCAAAGAACAACAAACTAATGCTTCCAAAGGTATTAGATTGGTACTTACTCGACTTTGCCAAGGATTTGGAATCGTTACTGGATTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAACTAAGTGTATGGAGAGAAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAGATTGCTTTTGCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

597

Amino Acids

67.57

Weight (kDa)

9.46

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 52 - 133 2.8e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 402 - 531 3.1e-40 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1212
AccI GTMKAC 1 cut(s) 1500
AciI CCGC 1 cut(s) 797
AclWI GGATC 6 cut(s) 886, 995, 1008, 1111, 1243, 1256
AcsI RAATTY 2 cut(s) 421, 1370
AcuI CTGAAG 4 cut(s) 303, 1062, 1652, 1750
AfaI GTAC 2 cut(s) 1616, 1755
AfeI AGCGCT 1 cut(s) 1278
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 7 cut(s) 299, 378, 415, 481, 699, 1369, 1748
AjuI GAANNNNNNNTTGG 2 cut(s) 1220, 1252
Alw21I GWGCWC 2 cut(s) 1245, 1414
Alw26I GTCTC 5 cut(s) 60, 166, 522, 1130, 1345
AlwI GGATC 6 cut(s) 886, 995, 1008, 1111, 1243, 1256
Aor51HI AGCGCT 1 cut(s) 1278
ApeKI GCWGC 5 cut(s) 791, 794, 826, 1508, 1535
ApoI RAATTY 2 cut(s) 421, 1370
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
Asp700I GAANNNNTTC 4 cut(s) 309, 548, 1232, 1743
AspLEI GCGC 1 cut(s) 1279
AspS9I GGNCC 1 cut(s) 1479
AsuC2I CCSGG 1 cut(s) 1253
AsuHPI GGTGA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 1479
BamHI GGATCC 2 cut(s) 1000, 1248
BanII GRGCYC 2 cut(s) 1414, 1446
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 233, 897
Bbv12I GWGCWC 2 cut(s) 1245, 1414
BbvI GCAGC 5 cut(s) 778, 806, 838, 1520, 1522
BccI CCATC 2 cut(s) 43, 1128
BclI TGATCA 2 cut(s) 489, 559
BcnI CCSGG 1 cut(s) 1253
BcoDI GTCTC 5 cut(s) 60, 166, 522, 1130, 1345
BfaI CTAG 5 cut(s) 216, 687, 830, 1163, 1529
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 1 cut(s) 1280
BfrI CTTAAG 1 cut(s) 158
BisI GCNGC 5 cut(s) 792, 795, 827, 1509, 1536
BlsI GCNGC 5 cut(s) 793, 796, 828, 1510, 1537
Bme1390I CCNGG 1 cut(s) 1253
Bme18I GGWCC 1 cut(s) 1479
BmgT120I GGNCC 1 cut(s) 1479
BmiI GGNNCC 2 cut(s) 1002, 1250
BmrFI CCNGG 1 cut(s) 1253
BmsI GCATC 4 cut(s) 517, 540, 1272, 1568
BpiI GAAGAC 2 cut(s) 233, 897
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 6 cut(s) 42, 520, 846, 988, 1112, 1369
BpuMI CCSGG 1 cut(s) 1253
BsaBI GATNNNNATC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 984, 1446, 1632
Bse1I ACTGG 2 cut(s) 653, 1656
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 457
BseDI CCNNGG 3 cut(s) 984, 1446, 1632
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 457
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 4 cut(s) 161, 717, 822, 1032
BseNI ACTGG 2 cut(s) 653, 1656
BseRI GAGGAG 3 cut(s) 194, 335, 544
BseXI GCAGC 5 cut(s) 778, 806, 838, 1520, 1522
Bsh1285I CGRYCG 1 cut(s) 1068
BsiEI CGRYCG 1 cut(s) 1068
BsiHKAI GWGCWC 2 cut(s) 1245, 1414
BsiSI CCGG 2 cut(s) 785, 1253
BslFI GGGAC 1 cut(s) 1365
BsmAI GTCTC 5 cut(s) 60, 166, 522, 1130, 1345
BsmBI CGTCTC 1 cut(s) 1130
BsmFI GGGAC 1 cut(s) 1365
BsmI GAATGC 3 cut(s) 1193, 1232, 1234
Bsp1286I GDGCHC 3 cut(s) 1245, 1414, 1446
Bsp143I GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
BspACI CCGC 1 cut(s) 797
BspCNI CTCAG 4 cut(s) 162, 718, 821, 1031
BspLI GGNNCC 2 cut(s) 1002, 1250
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 6 cut(s) 886, 995, 1008, 1111, 1243, 1256
BspQI GCTCTTC 1 cut(s) 1518
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 653, 1656
BssECI CCNNGG 3 cut(s) 984, 1446, 1632
BssMI GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 3 cut(s) 984, 1446, 1632
Bst2BI CACGAG 1 cut(s) 473
Bst4CI ACNGT 4 cut(s) 410, 516, 568, 1169
Bst6I CTCTTC 3 cut(s) 294, 554, 1518
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 1191, 1557
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 1280
BstHHI GCGC 1 cut(s) 1279
BstKTI GATC 9 cut(s) 455, 492, 562, 850, 881, 1003, 1087, 1119, 1251
BstMAI GTCTC 5 cut(s) 60, 166, 522, 1130, 1345
BstMBI GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
BstMCI CGRYCG 1 cut(s) 1068
BstMWI GCNNNNNNNGC 2 cut(s) 287, 1144
BstSCI CCNGG 1 cut(s) 1251
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 778, 806, 838, 1520, 1522
BstV2I GAAGAC 2 cut(s) 233, 897
BstX2I RGATCY 2 cut(s) 1000, 1248
BstXI CCANNNNNNTGG 1 cut(s) 1639
BstYI RGATCY 2 cut(s) 1000, 1248
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 2 cut(s) 640, 899
BtsIMutI CAGTG 2 cut(s) 640, 899
Cac8I GCNNGC 2 cut(s) 1191, 1557
CfoI GCGC 1 cut(s) 1279
Cfr13I GGNCC 1 cut(s) 1479
CseI GACGC 1 cut(s) 600
Csp6I GTAC 2 cut(s) 1615, 1754
CspCI CAANNNNNGTGG 2 cut(s) 1284, 1319
CviAII CATG 1 cut(s) 1397
CviQI GTAC 2 cut(s) 1615, 1754
DpnI GATC 9 cut(s) 454, 491, 561, 849, 880, 1002, 1086, 1118, 1250
DpnII GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
Eam1104I CTCTTC 3 cut(s) 294, 554, 1518
EarI CTCTTC 3 cut(s) 294, 554, 1518
Ecl136II GAGCTC 1 cut(s) 1412
Eco130I CCWWGG 3 cut(s) 984, 1446, 1632
Eco24I GRGCYC 2 cut(s) 1414, 1446
Eco32I GATATC 1 cut(s) 1572
Eco47I GGWCC 1 cut(s) 1479
Eco47III AGCGCT 1 cut(s) 1278
Eco53kI GAGCTC 1 cut(s) 1412
Eco57I CTGAAG 4 cut(s) 303, 1062, 1652, 1750
EcoICRI GAGCTC 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 421
EcoRV GATATC 1 cut(s) 1572
EcoT14I CCWWGG 3 cut(s) 984, 1446, 1632
EcoT22I ATGCAT 1 cut(s) 1234
EcoT38I GRGCYC 2 cut(s) 1414, 1446
ErhI CCWWGG 3 cut(s) 984, 1446, 1632
Esp3I CGTCTC 1 cut(s) 1130
FaeI CATG 1 cut(s) 1400
FaqI GGGAC 1 cut(s) 1365
FatI CATG 1 cut(s) 1396
FauNDI CATATG 1 cut(s) 1759
FbaI TGATCA 2 cut(s) 489, 559
FblI GTMKAC 1 cut(s) 1500
Fnu4HI GCNGC 5 cut(s) 792, 795, 827, 1509, 1536
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 2 cut(s) 1414, 1446
Fsp4HI GCNGC 5 cut(s) 792, 795, 827, 1509, 1536
FspBI CTAG 5 cut(s) 216, 687, 830, 1163, 1529
GlaI GCGC 1 cut(s) 1278
GluI GCNGC 5 cut(s) 792, 795, 827, 1509, 1536
GsuI CTGGAG 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 1280
HapII CCGG 2 cut(s) 785, 1253
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 1279
Hin1II CATG 1 cut(s) 1400
Hin6I GCGC 1 cut(s) 1277
HinP1I GCGC 1 cut(s) 1277
HindIII AAGCTT 4 cut(s) 155, 734, 1145, 1187
HpaII CCGG 2 cut(s) 785, 1253
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 3 cut(s) 334, 367, 1501
Hpy8I GTNNAC 3 cut(s) 334, 367, 1501
Hpy99I CGWCG 3 cut(s) 111, 616, 1066
HpyAV CCTTC 2 cut(s) 1282, 1676
HpyCH4III ACNGT 4 cut(s) 410, 516, 568, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 1144
Hsp92II CATG 1 cut(s) 1400
HspAI GCGC 1 cut(s) 1277
Ksp22I TGATCA 2 cut(s) 489, 559
Kzo9I GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
LguI GCTCTTC 1 cut(s) 1518
LmnI GCTCC 5 cut(s) 68, 227, 271, 322, 1240
Lsp1109I GCAGC 5 cut(s) 778, 806, 838, 1520, 1522
LweI GCATC 4 cut(s) 517, 540, 1272, 1568
MaeI CTAG 5 cut(s) 216, 687, 830, 1163, 1529
MaeIII GTNAC 5 cut(s) 637, 955, 1450, 1647, 1671
MalI GATC 9 cut(s) 454, 491, 561, 849, 880, 1002, 1086, 1118, 1250
MboI GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
MflI RGATCY 2 cut(s) 1000, 1248
MhlI GDGCHC 3 cut(s) 1245, 1414, 1446
MluCI AATT 8 cut(s) 79, 421, 481, 821, 1213, 1299, 1370, 1739
MlyI GAGTC 3 cut(s) 62, 403, 1252
MmeI TCCRAC 1 cut(s) 978
Mph1103I ATGCAT 1 cut(s) 1234
MroXI GAANNNNTTC 4 cut(s) 309, 548, 1232, 1743
MseI TTAA 5 cut(s) 99, 159, 570, 780, 1140
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 785, 1253
MspR9I CCNGG 1 cut(s) 1253
Mva1269I GAATGC 3 cut(s) 1193, 1232, 1234
MwoI GCNNNNNNNGC 2 cut(s) 287, 1144
NciI CCSGG 1 cut(s) 1253
NdeI CATATG 1 cut(s) 1759
NdeII GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
NlaIII CATG 1 cut(s) 1400
NlaIV GGNNCC 2 cut(s) 1002, 1250
NmuCI GTSAC 2 cut(s) 955, 1450
NsiI ATGCAT 1 cut(s) 1234
PciSI GCTCTTC 1 cut(s) 1518
PctI GAATGC 3 cut(s) 1193, 1232, 1234
PdmI GAANNNNTTC 4 cut(s) 309, 548, 1232, 1743
PfeI GAWTC 8 cut(s) 385, 676, 719, 744, 812, 1098, 1643, 1727
PkrI GCNGC 5 cut(s) 793, 796, 828, 1510, 1537
PleI GAGTC 3 cut(s) 61, 402, 1252
PpsI GAGTC 3 cut(s) 61, 402, 1252
PsiI TTATAA 1 cut(s) 1212
Psp124BI GAGCTC 1 cut(s) 1414
PspN4I GGNNCC 2 cut(s) 1002, 1250
PspPI GGNCC 1 cut(s) 1479
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 2 cut(s) 1000, 1248
RsaI GTAC 2 cut(s) 1616, 1755
RsaNI GTAC 2 cut(s) 1615, 1754
SacI GAGCTC 1 cut(s) 1414
SapI GCTCTTC 1 cut(s) 1518
SaqAI TTAA 5 cut(s) 99, 159, 570, 780, 1140
SatI GCNGC 5 cut(s) 792, 795, 827, 1509, 1536
Sau3AI GATC 9 cut(s) 452, 489, 559, 847, 878, 1000, 1084, 1116, 1248
Sau96I GGNCC 1 cut(s) 1479
SchI GAGTC 3 cut(s) 62, 403, 1252
ScrFI CCNGG 1 cut(s) 1253
SduI GDGCHC 3 cut(s) 1245, 1414, 1446
SfaNI GCATC 4 cut(s) 517, 540, 1272, 1568
SfcI CTRYAG 1 cut(s) 792
SinI GGWCC 1 cut(s) 1479
SmlI CTYRAG 7 cut(s) 57, 158, 535, 861, 967, 1127, 1348
SmoI CTYRAG 7 cut(s) 57, 158, 535, 861, 967, 1127, 1348
Sse9I AATT 8 cut(s) 79, 421, 481, 821, 1213, 1299, 1370, 1739
SsiI CCGC 1 cut(s) 797
SspMI CTAG 5 cut(s) 216, 687, 830, 1163, 1529
SstI GAGCTC 1 cut(s) 1414
StyD4I CCNGG 1 cut(s) 1251
StyI CCWWGG 3 cut(s) 984, 1446, 1632
TaaI ACNGT 4 cut(s) 410, 516, 568, 1169
TaqI TCGA 5 cut(s) 259, 455, 1068, 1335, 1623
TaqII GACCGA 2 cut(s) 591, 1054
TasI AATT 8 cut(s) 79, 421, 481, 821, 1213, 1299, 1370, 1739
TfiI GAWTC 8 cut(s) 385, 676, 719, 744, 812, 1098, 1643, 1727
Tru1I TTAA 5 cut(s) 99, 159, 570, 780, 1140
Tru9I TTAA 5 cut(s) 99, 159, 570, 780, 1140
TscAI CASTG 2 cut(s) 640, 906
TseFI GTSAC 2 cut(s) 955, 1450
TseI GCWGC 5 cut(s) 791, 794, 826, 1508, 1535
Tsp45I GTSAC 2 cut(s) 955, 1450
TspDTI ATGAA 5 cut(s) 179, 1098, 1241, 1333, 1413
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 640, 906
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 1479
XapI RAATTY 2 cut(s) 421, 1370
XbaI TCTAGA 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 1500
XmnI GAANNNNTTC 4 cut(s) 309, 548, 1232, 1743
XspI CTAG 5 cut(s) 216, 687, 830, 1163, 1529
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.