FvH4_1g15700

Transmembrane protein 131-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
8919611 .. 8924000
4390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15700.t4

Sequence Viewer

Length: 1911 bp
ATGATTATGAGAGCAGGTTGTCACACACAAGCACAAAAGCCTAAAGTCACAACTTGCATCACCACTACTGACAGGTCACTCTCCTCTTTCTCTCCTCAAAGAAGAAGAAGCAGAAGCAGAAGCAGAAGCAGCACTAAAACTTTGAAGCAGAAGGAGAAGATGGAGACTCAGAGGAAGAACAGAGTGATGGGTTCTGAGAGAACTGGGATCAATCGACGTAAATCAAATAGAGAAAGAAAAATGGCATTGCTGCAAGATGTTGATAAGCTGAAGAAGAAGCTGAGACATGAAGAAAATGTTCATAGAGCTTTGGAGAGAGCTTTCACTAGACCATTAGGGGCTTTGCCTCGTCTTCCTCCGTATCTTCCTCCATATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTGGAAGAGGAGGTTGTTAGGCTTGAAGAACAGGTTGTGAATTTTAGACAAGGTTTATACCAGCAAGCTGTGTATCTATCTTCAAAGAGGAATGTGGAAAATTTGAGTGAGTCTCCAATTGAGCTGGCCACCCCAATTAGAAGTTCTAAGCATCAGAGATCAAAATCTATGTCACATAATGAGTTCACATCAGTAATATCAGCCAGCAGGCCTAGTCAACCTTCTCTTGGTAGAAGTGCTTCTAGTCGAAAGCTACTGTCCACTGATATCACCTCCGGTAATTGCTCTAGTAGGCAAGTCAGTAATGGAAAACAAATCACCAGGAAGCCCATTTCATCCTGCACACCTATCTTAGAAGATGTGAGAGGGAAAGAGAATCGGTTGTGTACTAATGCTGTGAGGGATAAGCAATCACCTGACAAGAAAATTGCCAAAACTGTATCAACACCAGTGAAGAAAACTCCCACCAAACATGAATCCATGCCGAAGTGTTTGGATCCTTTGAAGTTAGAGCTAGAGTGCAGGTTAGTAGACCAGGAAAAAGCACATGAGAGTTCATCTGGTTCTTCAGATGATAGGACAATGGATACAGATACCACTCCGAATAAAGTATCCGAGGAGATTGTAAAGTGCTTGTGTAGCATTTTTGTGAGGATGAGCACTTTGAAGGATAAAGTAGAGGAATTGGAGAATGGAGAGACGGGGTTTCGAGATCCTTATGAGATTGGTGTAGGATCGAGACCAATAGATGTTGGTCCCTATCAACATCTTTGTTCATTTGGTATTGGTTCAATTGATCTCAACAGAACAACAAGTGCATTGATGCTGATACACAGACTAAAGTCTCTACTTGAAAAGCTTGCTTCTGTGAACCTAGAGGGTCTAACTCATCAAGAGAAGCTTGCATTCTGGATTAACACTTACAATTCCTGCATGATGAAGGCTTTTCTGGAGCACGGGATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGCAACAATAGCTGTTGGGGGACATTCTCTGAATCCAATTACAATTGAGCATTTCATTTTGAGATTGCCTTATCACTTAAAATTTACATGTCCCAAAGCTGCAAAGAATGATGAGATGAAAGCTCGGAGCATATTCGGATTAGAGTGGTCTGAACCCTTGGTTACATTTGCACTTTCTTGTGGAAGCTGGTCCTCTCCTGCTGCGAGGGTGTACTCTGCAACTCATGTCGAAGAAGAGTTAGAAGCAGCGAAAAGGGACTATATACAGGCAGCAGTTGGATTTTCAAGTGAAAACAAGTTGATAATCCCCAAACTATTGGATTGGTATCTACTTGACTTTGCAAAGGATTTGGAGTCACTGGTTGATTGGATTTGCATGCAGCTACCAAATGAATTGAGAAATGAGGCAGTTAAAAGTCTTGAAAGAAGGGGAAGAGAGCCTTTTTCACAGTTGGTGCAAATAATGCCATACAATTTCAGTTTCAGGCTGCTCCTAAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

637

Amino Acids

72.08

Weight (kDa)

9.42

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 46 - 127 3.2e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 398 - 527 3.3e-39 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 5, 918
AccI GTMKAC 1 cut(s) 936
AclWI GGATC 5 cut(s) 215, 896, 909, 1112, 1147
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 3 cut(s) 445, 505, 1487
AcuI CTGAAG 3 cut(s) 290, 414, 957
AfaI GTAC 2 cut(s) 793, 1619
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 1493
AgsI TTSAA 9 cut(s) 145, 431, 489, 910, 1072, 1197, 1259, 1692, 1829
AjnI CCWGG 2 cut(s) 725, 939
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
Alw21I GWGCWC 2 cut(s) 1067, 1362
Alw26I GTCTC 7 cut(s) 158, 277, 522, 1097, 1138, 1254, 1367
AlwI GGATC 5 cut(s) 215, 896, 909, 1112, 1147
AoxI GGCC 2 cut(s) 531, 614
ApeKI GCWGC 8 cut(s) 129, 250, 1505, 1607, 1652, 1676, 1786, 1894
ApoI RAATTY 3 cut(s) 445, 505, 1487
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
Asp700I GAANNNNTTC 2 cut(s) 297, 643
AspS9I GGNCC 2 cut(s) 1160, 1596
AsuHPI GGTGA 4 cut(s) 52, 667, 715, 810
AvaII GGWCC 2 cut(s) 1160, 1596
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 901
BarI GAAGNNNNNNTAC 2 cut(s) 628, 660
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 2 cut(s) 1067, 1362
BbvI GCAGC 8 cut(s) 141, 237, 1492, 1594, 1664, 1688, 1798, 1881
BccI CCATC 2 cut(s) 154, 181
BciT130I CCWGG 2 cut(s) 727, 941
BciVI GTATCC 3 cut(s) 985, 1027, 1359
BcoDI GTCTC 7 cut(s) 158, 277, 522, 1097, 1138, 1254, 1367
BfaI CTAG 6 cut(s) 327, 618, 648, 693, 920, 1280
BfuAI ACCTGC 2 cut(s) 5, 918
BfuI GTATCC 3 cut(s) 985, 1027, 1359
BisI GCNGC 8 cut(s) 130, 251, 1506, 1608, 1653, 1677, 1787, 1895
BlsI GCNGC 8 cut(s) 131, 252, 1507, 1609, 1654, 1678, 1788, 1896
Bme1390I CCNGG 2 cut(s) 727, 941
Bme18I GGWCC 2 cut(s) 1160, 1596
BmgT120I GGNCC 2 cut(s) 1160, 1596
BmiI GGNNCC 2 cut(s) 903, 1162
BmrFI CCNGG 2 cut(s) 727, 941
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 3 cut(s) 66, 565, 1218
BmuI ACTGGG 1 cut(s) 213
BoxI GACNNNNGTC 1 cut(s) 1246
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 1376
BsaBI GATNNNNATC 2 cut(s) 568, 1731
BsaI GGTCTC 1 cut(s) 1138
BsaJI CCNNGG 2 cut(s) 1020, 1563
BsaWI WCCGGW 1 cut(s) 680
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse1I ACTGG 3 cut(s) 208, 854, 1770
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 2 cut(s) 568, 1731
BseBI CCWGG 2 cut(s) 727, 941
BseDI CCNNGG 2 cut(s) 1020, 1563
BseGI GGATG 2 cut(s) 740, 1065
BseJI GATNNNNATC 2 cut(s) 568, 1731
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 4 cut(s) 182, 186, 272, 1362
BseNI ACTGG 3 cut(s) 208, 854, 1770
BseRI GAGGAG 4 cut(s) 73, 84, 428, 1037
BseXI GCAGC 8 cut(s) 141, 237, 1492, 1594, 1664, 1688, 1798, 1881
BsgI GTGCAG 2 cut(s) 730, 946
BshFI GGCC 2 cut(s) 533, 616
BsiHKAI GWGCWC 2 cut(s) 1067, 1362
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 4 cut(s) 1146, 1440, 1482, 1676
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 7 cut(s) 158, 277, 522, 1097, 1138, 1254, 1367
BsmBI CGTCTC 1 cut(s) 1097
BsmFI GGGAC 4 cut(s) 1146, 1440, 1482, 1676
BsmI GAATGC 1 cut(s) 1310
BsnI GGCC 2 cut(s) 533, 616
Bso31I GGTCTC 1 cut(s) 1138
Bsp1286I GDGCHC 2 cut(s) 1067, 1362
Bsp143I GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
BspANI GGCC 2 cut(s) 533, 616
BspCNI CTCAG 4 cut(s) 181, 187, 273, 1363
BspLI GGNNCC 2 cut(s) 903, 1162
BspMI ACCTGC 2 cut(s) 5, 918
BspPI GGATC 5 cut(s) 215, 896, 909, 1112, 1147
BspTNI GGTCTC 1 cut(s) 1138
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 3 cut(s) 208, 854, 1770
BssECI CCNNGG 2 cut(s) 1020, 1563
BssMI GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
BssT1I CCWWGG 1 cut(s) 1563
Bst2UI CCWGG 2 cut(s) 727, 941
Bst4CI ACNGT 3 cut(s) 663, 844, 1857
Bst6I CTCTTC 3 cut(s) 405, 1635, 1834
BstAPI GCANNNNNTGC 1 cut(s) 1870
BstC8I GCNNGC 7 cut(s) 471, 531, 610, 614, 1266, 1308, 1784
BstDEI CTNAG 6 cut(s) 168, 195, 281, 552, 757, 1371
BstF5I GGATG 2 cut(s) 740, 1065
BstKTI GATC 6 cut(s) 210, 566, 904, 1120, 1142, 1204
BstMAI GTCTC 7 cut(s) 158, 277, 522, 1097, 1138, 1254, 1367
BstMBI GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
BstMWI GCNNNNNNNGC 6 cut(s) 129, 398, 1044, 1415, 1870, 1903
BstNI CCWGG 2 cut(s) 727, 941
BstNSI RCATGY 2 cut(s) 1497, 1786
BstPAI GACNNNNGTC 1 cut(s) 1246
BstSCI CCNGG 2 cut(s) 725, 939
BstV1I GCAGC 8 cut(s) 141, 237, 1492, 1594, 1664, 1688, 1798, 1881
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 901, 1117
BstXI CCANNNNNNTGG 1 cut(s) 1723
BstYI RGATCY 2 cut(s) 901, 1117
BsuI GTATCC 3 cut(s) 985, 1027, 1359
BsuRI GGCC 2 cut(s) 533, 616
BtsCI GGATG 2 cut(s) 740, 1065
BtsIMutI CAGTG 3 cut(s) 666, 861, 1763
BveI ACCTGC 2 cut(s) 5, 918
Cac8I GCNNGC 7 cut(s) 471, 531, 610, 614, 1266, 1308, 1784
Cfr13I GGNCC 2 cut(s) 1160, 1596
Csp6I GTAC 2 cut(s) 792, 1618
CviAII CATG 8 cut(s) 287, 878, 886, 953, 1339, 1494, 1631, 1783
CviQI GTAC 2 cut(s) 792, 1618
DdeI CTNAG 6 cut(s) 168, 195, 281, 552, 757, 1371
DpnI GATC 6 cut(s) 209, 565, 903, 1119, 1141, 1203
DpnII GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 405, 1635, 1834
EarI CTCTTC 3 cut(s) 405, 1635, 1834
Eco130I CCWWGG 1 cut(s) 1563
Eco147I AGGCCT 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 1138
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 1160, 1596
Eco57I CTGAAG 3 cut(s) 290, 414, 957
EcoRII CCWGG 2 cut(s) 725, 939
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 1563
ErhI CCWWGG 1 cut(s) 1563
Esp3I CGTCTC 1 cut(s) 1097
FaeI CATG 8 cut(s) 290, 881, 889, 956, 1342, 1497, 1634, 1786
FalI AAGNNNNNCTT 4 cut(s) 1290, 1322, 1831, 1863
FaqI GGGAC 4 cut(s) 1146, 1440, 1482, 1676
FatI CATG 8 cut(s) 286, 877, 885, 952, 1338, 1493, 1630, 1782
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 8 cut(s) 130, 251, 1506, 1608, 1653, 1677, 1787, 1895
FokI GGATG 2 cut(s) 727, 1072
Fsp4HI GCNGC 8 cut(s) 130, 251, 1506, 1608, 1653, 1677, 1787, 1895
FspBI CTAG 6 cut(s) 327, 618, 648, 693, 920, 1280
GluI GCNGC 8 cut(s) 130, 251, 1506, 1608, 1653, 1677, 1787, 1895
GsuI CTGGAG 1 cut(s) 1376
HaeIII GGCC 2 cut(s) 533, 616
HapII CCGG 1 cut(s) 681
Hin1II CATG 8 cut(s) 290, 881, 889, 956, 1342, 1497, 1634, 1786
HincII GTYRAC 1 cut(s) 623
HindII GTYRAC 1 cut(s) 623
HindIII AAGCTT 2 cut(s) 1262, 1304
HinfI GANTC 7 cut(s) 166, 515, 781, 881, 1375, 1438, 1760
HpaII CCGG 1 cut(s) 681
HphI GGTGA 4 cut(s) 52, 667, 715, 810
Hpy166II GTNNAC 7 cut(s) 591, 623, 666, 792, 937, 1276, 1618
Hpy188III TCNNGA 7 cut(s) 1115, 1143, 1298, 1315, 1355, 1379, 1826
Hpy8I GTNNAC 7 cut(s) 591, 623, 666, 792, 937, 1276, 1618
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 5 cut(s) 145, 636, 1066, 1339, 1827
HpyCH4III ACNGT 3 cut(s) 663, 844, 1857
HpyCH4IV ACGT 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 398, 1044, 1415, 1870, 1903
HpyF3I CTNAG 6 cut(s) 168, 195, 281, 552, 757, 1371
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 8 cut(s) 290, 881, 889, 956, 1342, 1497, 1634, 1786
Kzo9I GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
LmnI GCTCC 3 cut(s) 1357, 1533, 1902
Lsp1109I GCAGC 8 cut(s) 141, 237, 1492, 1594, 1664, 1688, 1798, 1881
LweI GCATC 3 cut(s) 66, 565, 1218
MaeI CTAG 6 cut(s) 327, 618, 648, 693, 920, 1280
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 6 cut(s) 20, 46, 75, 576, 1567, 1761
MalI GATC 6 cut(s) 209, 565, 903, 1119, 1141, 1203
MboI GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
MfeI CAATTG 3 cut(s) 522, 1197, 1449
MflI RGATCY 2 cut(s) 901, 1117
MhlI GDGCHC 2 cut(s) 1067, 1362
MlsI TGGCCA 1 cut(s) 533
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 4 cut(s) 160, 524, 1369, 1769
MmeI TCCRAC 1 cut(s) 1663
Mox20I TGGCCA 1 cut(s) 533
MroXI GAANNNNTTC 2 cut(s) 297, 643
MscI TGGCCA 1 cut(s) 533
MseI TTAA 3 cut(s) 1320, 1484, 1818
MslI CAYNNNNRTG 1 cut(s) 1052
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 727, 941
MunI CAATTG 3 cut(s) 522, 1197, 1449
Mva1269I GAATGC 1 cut(s) 1310
MvaI CCWGG 2 cut(s) 727, 941
MwoI GCNNNNNNNGC 6 cut(s) 129, 398, 1044, 1415, 1870, 1903
NdeII GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
NlaIII CATG 8 cut(s) 290, 881, 889, 956, 1342, 1497, 1634, 1786
NlaIV GGNNCC 2 cut(s) 903, 1162
NmuCI GTSAC 5 cut(s) 20, 46, 75, 576, 1761
NspI RCATGY 2 cut(s) 1497, 1786
PaeI GCATGC 1 cut(s) 1786
PceI AGGCCT 1 cut(s) 616
PciI ACATGT 1 cut(s) 1493
PctI GAATGC 1 cut(s) 1310
PdmI GAANNNNTTC 2 cut(s) 297, 643
PfeI GAWTC 3 cut(s) 781, 881, 1438
PkrI GCNGC 8 cut(s) 131, 252, 1507, 1609, 1654, 1678, 1788, 1896
PleI GAGTC 4 cut(s) 160, 523, 1369, 1768
PpsI GAGTC 4 cut(s) 160, 523, 1369, 1768
PscI ACATGT 1 cut(s) 1493
PshAI GACNNNNGTC 1 cut(s) 1246
Psp6I CCWGG 2 cut(s) 725, 939
PspGI CCWGG 2 cut(s) 725, 939
PspN4I GGNNCC 2 cut(s) 903, 1162
PspPI GGNCC 2 cut(s) 1160, 1596
PsuI RGATCY 2 cut(s) 901, 1117
RsaI GTAC 2 cut(s) 793, 1619
RsaNI GTAC 2 cut(s) 792, 1618
RseI CAYNNNNRTG 1 cut(s) 1052
SaqAI TTAA 3 cut(s) 1320, 1484, 1818
SatI GCNGC 8 cut(s) 130, 251, 1506, 1608, 1653, 1677, 1787, 1895
Sau3AI GATC 6 cut(s) 207, 563, 901, 1117, 1139, 1201
Sau96I GGNCC 2 cut(s) 1160, 1596
SchI GAGTC 4 cut(s) 160, 524, 1369, 1769
ScrFI CCNGG 2 cut(s) 727, 941
SduI GDGCHC 2 cut(s) 1067, 1362
SfaNI GCATC 3 cut(s) 66, 565, 1218
SinI GGWCC 2 cut(s) 1160, 1596
SmiMI CAYNNNNRTG 1 cut(s) 1052
SphI GCATGC 1 cut(s) 1786
SseBI AGGCCT 1 cut(s) 616
SspMI CTAG 6 cut(s) 327, 618, 648, 693, 920, 1280
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 2 cut(s) 725, 939
StyI CCWWGG 1 cut(s) 1563
TaaI ACNGT 3 cut(s) 663, 844, 1857
TaiI ACGT 1 cut(s) 220
TaqI TCGA 5 cut(s) 214, 652, 1114, 1142, 1635
TatI WGTACW 2 cut(s) 791, 1617
TfiI GAWTC 3 cut(s) 781, 881, 1438
Tru1I TTAA 3 cut(s) 1320, 1484, 1818
Tru9I TTAA 3 cut(s) 1320, 1484, 1818
TscAI CASTG 3 cut(s) 673, 861, 1770
TseFI GTSAC 5 cut(s) 20, 46, 75, 576, 1761
TseI GCWGC 8 cut(s) 129, 250, 1505, 1607, 1652, 1676, 1786, 1894
Tsp45I GTSAC 5 cut(s) 20, 46, 75, 576, 1761
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 3 cut(s) 673, 861, 1770
VpaK11BI GGWCC 2 cut(s) 1160, 1596
XapI RAATTY 3 cut(s) 445, 505, 1487
XceI RCATGY 2 cut(s) 1497, 1786
XmiI GTMKAC 1 cut(s) 936
XmnI GAANNNNTTC 2 cut(s) 297, 643
XspI CTAG 6 cut(s) 327, 618, 648, 693, 920, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.