RchiOBHm_Chr2g0105011

Transmembrane protein 131-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
16280962 .. 16286077
5116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47925

Sequence Viewer

Length: 1821 bp
ATGAATACCAGAGTCCGCGCCAATCTTCAGACCATGAAAGCTGCTTCAAATAATGATAAAAAGGAGAAGATGGAGACTCAGAGGAAGAACAGAGTGATGGGTTCTGAGAGAACTGGAATCAATCGACGTAAATCAAATAGAGAAAGAAAAGTGGCCTTACTGCAAGATGTTGATAAGCTGAAGAAGAAGCTCAGGCATGAAGAAAATGTTCATAGAGCTTTGGAGAGAGCTTTCACAAGACCATTAGGAGCTTTGCCTCGTCTTCCTCCTTATCTTCCTCCATATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTAGAAGAGGAGGTTGTTAGGCTTGAAGAACAAGTTGTGAATTTTAGACAAGGTCTATACCAGCAAGCTGTGTATCTATCTTCAAAGAGGAATGTGGAAAATTTGAGTGAGTCTCCAATTGAGCAGACCACCCCAATTAGAAGTTCTAAGCATCAGAGATCAAAATCTATGTCACATAATGAGTTCACATCAGCAATATCAGCCACCAGGCTTAGTCAACCTTCTCTTGGTAGAAGTGCTTCTAGTCGAAAGCTACTGTCCACTGATATCGTCTCCGGGAATTGCTCAAGTAGGCAAGTCATTAATGGAAAACAAATCACCAGGAAGCCCATTTCATCCTGCACACCTATTTTAGAAGATGTGATAGGGAAAGAGAATCAGTTGTGTACTAATGTGGTGAGGGATAAGCAATCACCTGACAAGAAAGTTGCCAAAACTGCATCCACACCAGTGAAGAAAACTCCCACTAAACATGAATCCATGCCGAAGTGTTTGGATCCTTCGAAGTTAGAGCTAGAGTGCAGATTAGTAGACCAGGAAAAGGCACACGAGAGTTCATCCGCTTCTTCAGATGATAGGACAATGGAGACAGATAACACTCCGAATAAAGTATCTGAGGAGATTGTGAAGTGCTTGTCTAGCATTTTTGTGAGGATGAGCACTTTAAAGGATAAAGTAGAGGAATTGGAGAATGGAGAGACGGGGTTTCGAGATCCTTATGAGATTGGTTTAGAATCGAGAAAAATAGATGTTAGTCCCTATCAACATCTGTGTTCAATTGGTATTGGTTCAATTGATCTCAACAGAACAGCAAGTGCATTGATGCTGATACACAGACTAAAGTTTCTACTTGGAAAGCTTGCTTCTGTGAACCTAGAGGGTCTTACCCATCAAGAGAAGCTTGCATTTTGGATCAACACTTACAATTCCTGCATGATGAAGGCTTTTCTAGAGCATGGGATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGCAACAATAGCTGTTGGGGGACATTCTCTGAATCCAATTACAATTGAGCATTTCATTTTGAGATTGCCTTATCACTTAAAATTTACATGTCCAAAAGCTGCGAAAAATGATGAGATGAAAGCTCGCAGCATATTTGGATTAGAGTGGTCTGAACCCTTGGTTACATTTGCACTTTCTTGTGGAAGCTGGTCCTCTCCTGCTGTGAGGGTGTACTCTGCAACTCATGTCGAAGATGAGTTAGAAGCAGCGAAAAGGGACTATTTACAGGCAGCGGTTGGAATTTCAAGTGCAAACAAGTTGATAATCCCCAAGCTATTGGATTGGTATCTACTTGACTTTGCAAAGGATTTGGAATCATTGGTTGATTGGATTTGCATGCAGCTACCAAATGAATTGAGAAATGAGGCAGTTAAAAGCCTTGAAAGAAGGGGAAGAGAGCCTTTTTCACAGTTGGTGCAAATAATGCCATACAATTTCAGCTTCAGGCTGCTCTTACAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

606

Amino Acids

68.59

Weight (kDa)

9.16

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 46 - 127 4.1e-23 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 398 - 527 1.8e-39 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 846
AccII CGCG 1 cut(s) 18
AciI CCGC 3 cut(s) 16, 876, 1589
AclWI GGATC 4 cut(s) 806, 819, 1022, 1235
AcsI RAATTY 4 cut(s) 355, 415, 1397, 1596
AcuI CTGAAG 5 cut(s) 11, 200, 324, 867, 1783
AfaI GTAC 2 cut(s) 703, 1529
AfiI CCNNNNNNNGG 2 cut(s) 542, 856
AflIII ACRYGT 1 cut(s) 1403
AgsI TTSAA 7 cut(s) 48, 341, 399, 1092, 1107, 1602, 1739
AjnI CCWGG 3 cut(s) 521, 635, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AleI CACNNNNGTG 1 cut(s) 764
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 6 cut(s) 68, 432, 592, 896, 1007, 1277
AlwI GGATC 4 cut(s) 806, 819, 1022, 1235
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 7 cut(s) 41, 1415, 1443, 1562, 1586, 1696, 1804
ApoI RAATTY 4 cut(s) 355, 415, 1397, 1596
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AseI ATTAAT 1 cut(s) 618
Asp700I GAANNNNTTC 2 cut(s) 207, 553
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 1506
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 3 cut(s) 625, 720, 724
AsuII TTCGAA 1 cut(s) 818
AvaII GGWCC 1 cut(s) 1506
BamHI GGATCC 1 cut(s) 811
BarI GAAGNNNNNNTAC 2 cut(s) 538, 570
BauI CACGAG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 7 cut(s) 28, 1402, 1455, 1574, 1598, 1708, 1791
BccI CCATC 3 cut(s) 64, 91, 1212
BciT130I CCWGG 3 cut(s) 523, 637, 851
BciVI GTATCC 1 cut(s) 1269
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 6 cut(s) 68, 432, 592, 896, 1007, 1277
BfaI CTAG 5 cut(s) 558, 830, 954, 1190, 1265
BfuI GTATCC 1 cut(s) 1269
BisI GCNGC 7 cut(s) 42, 1416, 1444, 1563, 1587, 1697, 1805
BlsI GCNGC 7 cut(s) 43, 1417, 1445, 1564, 1588, 1698, 1806
Bme1390I CCNGG 4 cut(s) 523, 592, 637, 851
Bme18I GGWCC 1 cut(s) 1506
BmgT120I GGNCC 1 cut(s) 1506
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 4 cut(s) 523, 592, 637, 851
BmsI GCATC 3 cut(s) 475, 764, 1128
BpiI GAAGAC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 412, 444
Bpu10I CCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 1 cut(s) 592
BsaBI GATNNNNATC 2 cut(s) 478, 1641
BsaJI CCNNGG 1 cut(s) 1473
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 856
Bse1I ACTGG 2 cut(s) 118, 764
Bse8I GATNNNNATC 2 cut(s) 478, 1641
BseBI CCWGG 3 cut(s) 523, 637, 851
BseDI CCNNGG 1 cut(s) 1473
BseGI GGATG 4 cut(s) 650, 755, 872, 975
BseJI GATNNNNATC 2 cut(s) 478, 1641
BseLI CCNNNNNNNGG 2 cut(s) 542, 856
BseMII CTCAG 5 cut(s) 92, 96, 205, 921, 1272
BseNI ACTGG 2 cut(s) 118, 764
BseRI GAGGAG 2 cut(s) 338, 947
BseXI GCAGC 7 cut(s) 28, 1402, 1455, 1574, 1598, 1708, 1791
BsgI GTGCAG 2 cut(s) 640, 856
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 977
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 3 cut(s) 1056, 1350, 1586
BslI CCNNNNNNNGG 2 cut(s) 542, 856
BsmAI GTCTC 6 cut(s) 68, 432, 592, 896, 1007, 1277
BsmBI CGTCTC 2 cut(s) 592, 1007
BsmFI GGGAC 3 cut(s) 1056, 1350, 1586
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 977
Bsp143I GATC 5 cut(s) 473, 811, 1027, 1111, 1227
BspACI CCGC 3 cut(s) 16, 876, 1589
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 5 cut(s) 91, 97, 204, 922, 1273
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 813
BspPI GGATC 4 cut(s) 806, 819, 1022, 1235
BspT104I TTCGAA 1 cut(s) 818
BsrI ACTGG 2 cut(s) 118, 764
BssECI CCNNGG 1 cut(s) 1473
BssMI GATC 5 cut(s) 473, 811, 1027, 1111, 1227
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 1473
Bst2BI CACGAG 1 cut(s) 863
Bst2UI CCWGG 3 cut(s) 523, 637, 851
Bst4CI ACNGT 2 cut(s) 573, 1767
Bst6I CTCTTC 2 cut(s) 315, 1744
BstAPI GCANNNNNTGC 1 cut(s) 1780
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 5 cut(s) 381, 1176, 1218, 1441, 1694
BstDEI CTNAG 7 cut(s) 78, 105, 191, 462, 527, 930, 1281
BstF5I GGATG 4 cut(s) 650, 755, 872, 975
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 5 cut(s) 476, 814, 1030, 1114, 1230
BstMAI GTCTC 6 cut(s) 68, 432, 592, 896, 1007, 1277
BstMBI GATC 5 cut(s) 473, 811, 1027, 1111, 1227
BstMWI GCNNNNNNNGC 7 cut(s) 308, 515, 752, 954, 1325, 1780, 1813
BstNI CCWGG 3 cut(s) 523, 637, 851
BstNSI RCATGY 2 cut(s) 1407, 1696
BstSCI CCNGG 4 cut(s) 521, 590, 635, 849
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 7 cut(s) 28, 1402, 1455, 1574, 1598, 1708, 1791
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 811, 1027
BstXI CCANNNNNNTGG 1 cut(s) 1633
BstYI RGATCY 2 cut(s) 811, 1027
BsuI GTATCC 1 cut(s) 1269
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 4 cut(s) 650, 755, 872, 975
BtsIMutI CAGTG 2 cut(s) 576, 771
Cac8I GCNNGC 5 cut(s) 381, 1176, 1218, 1441, 1694
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 1506
Csp6I GTAC 2 cut(s) 702, 1528
CviAII CATG 9 cut(s) 34, 197, 788, 796, 1249, 1271, 1404, 1541, 1693
CviQI GTAC 2 cut(s) 702, 1528
DdeI CTNAG 7 cut(s) 78, 105, 191, 462, 527, 930, 1281
DpnI GATC 5 cut(s) 475, 813, 1029, 1113, 1229
DpnII GATC 5 cut(s) 473, 811, 1027, 1111, 1227
DraI TTTAAA 1 cut(s) 981
Eam1104I CTCTTC 2 cut(s) 315, 1744
EarI CTCTTC 2 cut(s) 315, 1744
Eco130I CCWWGG 1 cut(s) 1473
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 1506
Eco57I CTGAAG 5 cut(s) 11, 200, 324, 867, 1783
EcoRII CCWGG 3 cut(s) 521, 635, 849
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 1473
ErhI CCWWGG 1 cut(s) 1473
Esp3I CGTCTC 2 cut(s) 592, 1007
FaeI CATG 9 cut(s) 37, 200, 791, 799, 1252, 1274, 1407, 1544, 1696
FalI AAGNNNNNCTT 4 cut(s) 1200, 1232, 1741, 1773
FaqI GGGAC 3 cut(s) 1056, 1350, 1586
FatI CATG 9 cut(s) 33, 196, 787, 795, 1248, 1270, 1403, 1540, 1692
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 7 cut(s) 42, 1416, 1444, 1563, 1587, 1697, 1805
FokI GGATG 4 cut(s) 637, 742, 859, 982
Fsp4HI GCNGC 7 cut(s) 42, 1416, 1444, 1563, 1587, 1697, 1805
FspBI CTAG 5 cut(s) 558, 830, 954, 1190, 1265
GlaI GCGC 1 cut(s) 19
GluI GCNGC 7 cut(s) 42, 1416, 1444, 1563, 1587, 1697, 1805
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 591
HhaI GCGC 1 cut(s) 20
Hin1II CATG 9 cut(s) 37, 200, 791, 799, 1252, 1274, 1407, 1544, 1696
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 533
HindII GTYRAC 1 cut(s) 533
HindIII AAGCTT 2 cut(s) 1172, 1214
HpaII CCGG 1 cut(s) 591
HphI GGTGA 3 cut(s) 625, 720, 724
Hpy166II GTNNAC 7 cut(s) 501, 533, 576, 702, 847, 1186, 1528
Hpy188I TCNGA 9 cut(s) 30, 81, 106, 471, 886, 918, 931, 1347, 1468
Hpy188III TCNNGA 5 cut(s) 1025, 1053, 1208, 1265, 1289
Hpy8I GTNNAC 7 cut(s) 501, 533, 576, 702, 847, 1186, 1528
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 4 cut(s) 546, 825, 1249, 1737
HpyCH4III ACNGT 2 cut(s) 573, 1767
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 7 cut(s) 308, 515, 752, 954, 1325, 1780, 1813
HpyF3I CTNAG 7 cut(s) 78, 105, 191, 462, 527, 930, 1281
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 9 cut(s) 37, 200, 791, 799, 1252, 1274, 1407, 1544, 1696
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 473, 811, 1027, 1111, 1227
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 7 cut(s) 28, 1402, 1455, 1574, 1598, 1708, 1791
LweI GCATC 3 cut(s) 475, 764, 1128
MaeI CTAG 5 cut(s) 558, 830, 954, 1190, 1265
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 486, 1477
MalI GATC 5 cut(s) 475, 813, 1029, 1113, 1229
MboI GATC 5 cut(s) 473, 811, 1027, 1111, 1227
MfeI CAATTG 4 cut(s) 432, 1092, 1107, 1359
MflI RGATCY 2 cut(s) 811, 1027
MhlI GDGCHC 1 cut(s) 977
MlyI GAGTC 4 cut(s) 21, 70, 434, 1279
MmeI TCCRAC 1 cut(s) 1573
MroXI GAANNNNTTC 2 cut(s) 207, 553
MseI TTAA 4 cut(s) 618, 980, 1394, 1728
MslI CAYNNNNRTG 2 cut(s) 764, 962
MspA1I CMGCKG 1 cut(s) 1589
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 4 cut(s) 523, 592, 637, 851
MunI CAATTG 4 cut(s) 432, 1092, 1107, 1359
MvaI CCWGG 3 cut(s) 523, 637, 851
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 7 cut(s) 308, 515, 752, 954, 1325, 1780, 1813
NciI CCSGG 1 cut(s) 592
NdeII GATC 5 cut(s) 473, 811, 1027, 1111, 1227
NlaIII CATG 9 cut(s) 37, 200, 791, 799, 1252, 1274, 1407, 1544, 1696
NlaIV GGNNCC 1 cut(s) 813
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 2 cut(s) 1407, 1696
NspV TTCGAA 1 cut(s) 818
OliI CACNNNNGTG 1 cut(s) 764
PaeI GCATGC 1 cut(s) 1696
PciI ACATGT 1 cut(s) 1403
PdmI GAANNNNTTC 2 cut(s) 207, 553
PfeI GAWTC 6 cut(s) 117, 691, 791, 1049, 1348, 1670
PflFI GACNNNGTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 590
PkrI GCNGC 7 cut(s) 43, 1417, 1445, 1564, 1588, 1698, 1806
PleI GAGTC 4 cut(s) 20, 70, 433, 1279
PpsI GAGTC 4 cut(s) 20, 70, 433, 1279
PscI ACATGT 1 cut(s) 1403
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 521, 635, 849
PspGI CCWGG 3 cut(s) 521, 635, 849
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 1 cut(s) 1506
PsuI RGATCY 2 cut(s) 811, 1027
PsyI GACNNNGTC 1 cut(s) 366
RsaI GTAC 2 cut(s) 703, 1529
RsaNI GTAC 2 cut(s) 702, 1528
RseI CAYNNNNRTG 2 cut(s) 764, 962
SaqAI TTAA 4 cut(s) 618, 980, 1394, 1728
SatI GCNGC 7 cut(s) 42, 1416, 1444, 1563, 1587, 1697, 1805
Sau3AI GATC 5 cut(s) 473, 811, 1027, 1111, 1227
Sau96I GGNCC 1 cut(s) 1506
SchI GAGTC 4 cut(s) 21, 70, 434, 1279
ScrFI CCNGG 4 cut(s) 523, 592, 637, 851
SduI GDGCHC 1 cut(s) 977
SfaNI GCATC 3 cut(s) 475, 764, 1128
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 1 cut(s) 1506
SmiMI CAYNNNNRTG 2 cut(s) 764, 962
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
SphI GCATGC 1 cut(s) 1696
SsiI CCGC 3 cut(s) 16, 876, 1589
SspMI CTAG 5 cut(s) 558, 830, 954, 1190, 1265
StyD4I CCNGG 4 cut(s) 521, 590, 635, 849
StyI CCWWGG 1 cut(s) 1473
TaaI ACNGT 2 cut(s) 573, 1767
TaiI ACGT 1 cut(s) 130
TaqI TCGA 6 cut(s) 124, 562, 818, 1024, 1052, 1545
TatI WGTACW 2 cut(s) 701, 1527
TfiI GAWTC 6 cut(s) 117, 691, 791, 1049, 1348, 1670
Tru1I TTAA 4 cut(s) 618, 980, 1394, 1728
Tru9I TTAA 4 cut(s) 618, 980, 1394, 1728
TscAI CASTG 2 cut(s) 583, 771
TseFI GTSAC 1 cut(s) 486
TseI GCWGC 7 cut(s) 41, 1415, 1443, 1562, 1586, 1696, 1804
Tsp45I GTSAC 1 cut(s) 486
TspRI CASTG 2 cut(s) 583, 771
Tth111I GACNNNGTC 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 1506
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 4 cut(s) 355, 415, 1397, 1596
XbaI TCTAGA 1 cut(s) 1264
XceI RCATGY 2 cut(s) 1407, 1696
XmiI GTMKAC 1 cut(s) 846
XmnI GAANNNNTTC 2 cut(s) 207, 553
XspI CTAG 5 cut(s) 558, 830, 954, 1190, 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.