Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007088

Physical Location & Seq

Genomic Coordinates Reverse (-)

14486846 .. 14490994

Gene Structure 4149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1169000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGAATACCAGAGTACGCACTAATCTTCAGACCATGAAAGCTGCTGCTGCTATGAACCATGATATTAATAAAAAGGAGAAGAAGATGGAGACTCAGAAGAGCAGAGCAATGGGAATTGATAGAACTGCAATCAATCGGCGTAAATCGAACCGAGAACGAAAAATGGCATTGCAGAAAGATGTTGATAAGCTGAAGAAGAAGCTCAGACATGAAGAGAATGTACACAGAGCATTGGAAAGGGCTTTTACAAGACCATTGGGAGCTCTGCCTCGTCTTCCTCCTTATCTCCCTCCACATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTGGAAGAGGAGGTTGTTCGGCTCGAAGAACAGGTTGTTAATTTTCGACAAGGCCTGTATCAGCAGGCTGTGTATCTGTCCTCCAAGAGTAGTGTCGAAACTTTGAATGATTCGATTGAGCGGACACCAATTCGAGGCTCTAAACATCAGAGGTCAAAATCTTTGTCACACAATGAGTTCAAATCAGTAGCAGCAGCCAGCAGGCTTCAACCTTCTCTTGCTCGCTGTGCTTCGAGCAGAAGGATGATGTCCACTGATCATATCGTCTATGATCGAACGGGGAATTGTTCTACTAGGCAAGTCAATGGAAAACAAACTCCCAGGAAACCCAATTCCTTCACACCTATTGCAGAAGATGGTAGAGGAAATGAGAATCGATTATGTCCTAATGCAGCGAAGGATAAGCAGTCTCCTGACAAGAAAACCGCTAAAATTGTAACCCCAGTGAAAAAATCTCCTATGAAACATGAATCCATGGCAAAATCTTCGGACGCTTTGAAGTTAGAGCTAGAGTGCAGATTAGTAGACCAGGAAAGAACACATGAGAGTTCATCTAGTTCTTCGGATGATAGGGTTCTGGAAGCTGATAACACTCCTAACAAAGTGTCTGAGGACATTGTCAAGTGTTTGTCCAGCATTTTTGTGAGGATGAGCAGTTTGAAGGACAAGGTAGAGGAATTGGGAAGTTCTAGATCAGCATTATCTGCTCATGCAGCAAATGGAGAGACAGGGTTTCGAGATCCTTATGGTATTTGTTTGGAATTCAGAGACATGGACGTTGGCCCCTATAAACACCTCCATTCGATTGATATTTGTTCGATTGATCTCAACAGAACAACAAGCGCGTTGATTCTGATGCACAGATTAAAGTTCCTACTTGGAAAGCTTGCCACAGTGAGTCTAGAAGGTCTTAACCATCAGCAAAAGCTTGCATTTTGGATCAATACTTATAATTCCTGCATGATGAAGGCATTTTTAGAGCATGGGATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGCAACAATAGGTGTCGGGGGGCACCCACTGAATGCAATTACAATCGAGCATTTCATTTTAAGACTGCCTTATCACTTGAAATTTACATGTCCAAAAGCTGCGAAAAATGATGAGATGAAAGCTCGCAGCATTTTCGGATTAGAGTGGTCTGAACCCTTGGTTACATTTGCACTTTCGTGCGGAAGCTGGTCCTCCCCTGCAGTTAGAGTGTACTCAGCAGCTCATGTGGAAGAAGAGTTGGAAGCAGCAAAAAGGGAGTATATACAGGCAGCAGTTGGCATTTCAAGGACAAACAAACTGATCATCCCCAAGCTTTTGGATTGGTATTTACTCGATTTCGCAAAGGATTTGGAATCATTGGTGGACTGGATTTGCATGCAGCTACCAAATGAACTGAGAAATGAGGCAGTTCAATGCCTTGAAAGGAGGGGAAGAGACGAACCCTTTTCACAGTTGGTGCAAATAATGCCATACAATTTCACCTTCAGGCTGCTCTTACAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

621

Amino Acids

70.23

Weight (kDa)

9.3

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	50 - 131	3.5e-24	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	411 - 540	6e-40	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37080 AT4G37080 AT4G37080
fragaria_vesca	FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700
malus_domestica	MD02G1169000.v1.1 MD15G1281000.v1.1
prunus_persica	Prupe.7G136300_v2.0.a1
pyrus_communis	pycom02g13570 pycom15g24450
rosa_chinensis	RchiOBHm_Chr2g0105011
rosa_laevigata	RLG00000017389
rosa_multiflora	Rmu_sc0000641.1_g000026
rosa_roxburghii	Rroxscaffold_2G00138580
rosa_rugosa	Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1
rosa_samantha	Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800
rosa_wichuraiana	Rw2G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1278
AccB1I	GGYRCC	1 cut(s)	1377
AccBSI	CCGCTC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	1 cut(s)	1172
AciI	CCGC	3 cut(s)	448, 753, 1536
AclWI	GGATC	2 cut(s)	1061, 1274
AcsI	RAATTY	2 cut(s)	1088, 1436
AcuI	CTGAAG	4 cut(s)	11, 212, 336, 1825
AfaI	GTAC	3 cut(s)	15, 222, 1568
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	1442
AgsI	TTSAA	9 cut(s)	433, 508, 536, 826, 988, 1435, 1641, 1769, 1778
AjnI	CCWGG	2 cut(s)	647, 855
AleI	CACNNNNGTG	1 cut(s)	1531
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	6 cut(s)	83, 741, 1046, 1089, 1316, 1785
AlwI	GGATC	2 cut(s)	1061, 1274
AoxI	GGCC	2 cut(s)	379, 1108
ApoI	RAATTY	2 cut(s)	1088, 1436
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	1172
AspS9I	GGNCC	2 cut(s)	1109, 1545
AsuHPI	GGTGA	1 cut(s)	1828
AvaII	GGWCC	1 cut(s)	1545
BaeGI	GKGCMC	1 cut(s)	1380
BanI	GGYRCC	1 cut(s)	1377
BanII	GRGCYC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	265
BccI	CCATC	3 cut(s)	79, 677, 1251
BcgI	CGANNNNNNTGC	4 cut(s)	795, 829, 1471, 1505
BciT130I	CCWGG	2 cut(s)	649, 857
BciVI	GTATCC	1 cut(s)	1308
BclI	TGATCA	2 cut(s)	583, 1656
BcoDI	GTCTC	6 cut(s)	83, 741, 1046, 1089, 1316, 1785
BfaI	CTAG	5 cut(s)	621, 836, 882, 1017, 1229
BfmI	CTRYAG	1 cut(s)	1554
BfuI	GTATCC	1 cut(s)	1308
Bme1390I	CCNGG	2 cut(s)	649, 857
Bme18I	GGWCC	1 cut(s)	1545
BmgT120I	GGNCC	2 cut(s)	1109, 1545
BmiI	GGNNCC	2 cut(s)	1111, 1379
BmrFI	CCNGG	2 cut(s)	649, 857
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	1173
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	647, 801, 1512
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	770, 1727
Bse3DI	GCAATG	2 cut(s)	114, 167
BseBI	CCWGG	2 cut(s)	649, 857
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	3 cut(s)	647, 801, 1512
BseGI	GGATG	4 cut(s)	576, 898, 981, 1659
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	2 cut(s)	114, 167
BseMII	CTCAG	6 cut(s)	107, 217, 927, 1311, 1584, 1742
BseNI	ACTGG	2 cut(s)	770, 1727
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	1380
BsgI	GTGCAG	1 cut(s)	862
Bsh1236I	CGCG	1 cut(s)	1172
BshFI	GGCC	2 cut(s)	381, 1110
BshNI	GGYRCC	1 cut(s)	1377
BshVI	ATCGAT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	6 cut(s)	83, 741, 1046, 1089, 1316, 1785
BsmBI	CGTCTC	1 cut(s)	1785
BsmI	GAATGC	1 cut(s)	1393
BsnI	GGCC	2 cut(s)	381, 1110
Bsp1286I	GDGCHC	2 cut(s)	265, 1380
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	3 cut(s)	448, 753, 1536
BspANI	GGCC	2 cut(s)	381, 1110
BspCNI	CTCAG	6 cut(s)	106, 216, 928, 1312, 1583, 1743
BspDI	ATCGAT	1 cut(s)	703
BspFNI	CGCG	1 cut(s)	1172
BspLI	GGNNCC	2 cut(s)	1111, 1379
BspMAI	CTGCAG	1 cut(s)	1558
BspPI	GGATC	2 cut(s)	1061, 1274
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	1377
BsrBI	CCGCTC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	114, 167
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	770, 1727
BssECI	CCNNGG	3 cut(s)	647, 801, 1512
BssMI	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
BssT1I	CCWWGG	2 cut(s)	801, 1512
Bst2UI	CCWGG	2 cut(s)	649, 857
Bst4CI	ACNGT	2 cut(s)	1222, 1809
Bst6I	CTCTTC	5 cut(s)	92, 207, 327, 1584, 1783
BstAPI	GCANNNNNTGC	2 cut(s)	1031, 1822
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	8 cut(s)	393, 526, 530, 550, 1215, 1257, 1480, 1733
BstDEI	CTNAG	6 cut(s)	93, 203, 936, 1320, 1570, 1751
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	4 cut(s)	576, 898, 981, 1659
BstFNI	CGCG	1 cut(s)	1172
BstHHI	GCGC	1 cut(s)	1172
BstKTI	GATC	7 cut(s)	586, 601, 1022, 1069, 1153, 1269, 1659
BstMAI	GTCTC	6 cut(s)	83, 741, 1046, 1089, 1316, 1785
BstMBI	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 320, 554, 1031, 1040, 1822
BstNI	CCWGG	2 cut(s)	649, 857
BstNSI	RCATGY	2 cut(s)	1446, 1735
BstSCI	CCNGG	2 cut(s)	647, 855
BstSFI	CTRYAG	1 cut(s)	1554
BstSLI	GKGCMC	1 cut(s)	1380
BstUI	CGCG	1 cut(s)	1172
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	1066
BstXI	CCANNNNNNTGG	1 cut(s)	1672
BstYI	RGATCY	1 cut(s)	1066
Bsu15I	ATCGAT	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	1308
BsuRI	GGCC	2 cut(s)	381, 1110
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	801
BtsCI	GGATG	4 cut(s)	576, 898, 981, 1659
BtsIMutI	CAGTG	4 cut(s)	579, 777, 1227, 1382
Cac8I	GCNNGC	8 cut(s)	393, 526, 530, 550, 1215, 1257, 1480, 1733
CfoI	GCGC	1 cut(s)	1172
Cfr13I	GGNCC	2 cut(s)	1109, 1545
ClaI	ATCGAT	1 cut(s)	703
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	3 cut(s)	14, 221, 1567
CviQI	GTAC	3 cut(s)	14, 221, 1567
DdeI	CTNAG	6 cut(s)	93, 203, 936, 1320, 1570, 1751
DpnI	GATC	7 cut(s)	585, 600, 1021, 1068, 1152, 1268, 1658
DpnII	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
Eam1104I	CTCTTC	5 cut(s)	92, 207, 327, 1584, 1783
EarI	CTCTTC	5 cut(s)	92, 207, 327, 1584, 1783
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	801, 1512
Eco147I	AGGCCT	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	1545
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	4 cut(s)	11, 212, 336, 1825
EcoICRI	GAGCTC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	1088
EcoRII	CCWGG	2 cut(s)	647, 855
EcoT14I	CCWWGG	2 cut(s)	801, 1512
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	801, 1512
Esp3I	CGTCTC	1 cut(s)	1785
FalI	AAGNNNNNCTT	2 cut(s)	1408, 1440
FbaI	TGATCA	2 cut(s)	583, 1656
FblI	GTMKAC	1 cut(s)	852
FokI	GGATG	4 cut(s)	583, 905, 988, 1646
FriOI	GRGCYC	1 cut(s)	265
FspBI	CTAG	5 cut(s)	621, 836, 882, 1017, 1229
GlaI	GCGC	1 cut(s)	1171
HaeIII	GGCC	2 cut(s)	381, 1110
HgaI	GACGC	1 cut(s)	827
HhaI	GCGC	1 cut(s)	1172
Hin6I	GCGC	1 cut(s)	1170
HinP1I	GCGC	1 cut(s)	1170
HindIII	AAGCTT	3 cut(s)	1211, 1253, 1667
HinfI	GANTC	8 cut(s)	91, 437, 700, 797, 1177, 1225, 1324, 1709
HphI	GGTGA	1 cut(s)	1828
Hpy166II	GTNNAC	5 cut(s)	223, 579, 853, 1567, 1720
Hpy188III	TCNNGA	6 cut(s)	740, 905, 1017, 1064, 1229, 1328
Hpy8I	GTNNAC	5 cut(s)	223, 579, 853, 1567, 1720
HpyAV	CCTTC	8 cut(s)	549, 561, 673, 718, 982, 1226, 1288, 1849
HpyCH4III	ACNGT	2 cut(s)	1222, 1809
HpyCH4IV	ACGT	1 cut(s)	1104
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 320, 554, 1031, 1040, 1822
HpyF3I	CTNAG	6 cut(s)	93, 203, 936, 1320, 1570, 1751
HpySE526I	ACGT	1 cut(s)	1104
HspAI	GCGC	1 cut(s)	1170
Ksp22I	TGATCA	2 cut(s)	583, 1656
Kzo9I	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	260
LweI	GCATC	1 cut(s)	1173
MaeI	CTAG	5 cut(s)	621, 836, 882, 1017, 1229
MaeII	ACGT	1 cut(s)	1104
MaeIII	GTNAC	3 cut(s)	492, 763, 1516
MalI	GATC	7 cut(s)	585, 600, 1021, 1068, 1152, 1268, 1658
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
MflI	RGATCY	1 cut(s)	1066
MhlI	GDGCHC	2 cut(s)	265, 1380
MlyI	GAGTC	3 cut(s)	85, 1234, 1318
MmeI	TCCRAC	1 cut(s)	1575
MseI	TTAA	5 cut(s)	66, 366, 1193, 1239, 1415
MslI	CAYNNNNRTG	2 cut(s)	968, 1531
MspR9I	CCNGG	2 cut(s)	649, 857
Mva1269I	GAATGC	1 cut(s)	1393
MvaI	CCWGG	2 cut(s)	649, 857
MvnI	CGCG	1 cut(s)	1172
MwoI	GCNNNNNNNGC	6 cut(s)	47, 320, 554, 1031, 1040, 1822
NcoI	CCATGG	1 cut(s)	801
NdeII	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
NlaIV	GGNNCC	2 cut(s)	1111, 1379
NmuCI	GTSAC	1 cut(s)	492
NspI	RCATGY	2 cut(s)	1446, 1735
OliI	CACNNNNGTG	1 cut(s)	1531
PaeI	GCATGC	1 cut(s)	1735
PceI	AGGCCT	1 cut(s)	381
PciI	ACATGT	1 cut(s)	1442
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	1393
PfeI	GAWTC	5 cut(s)	437, 700, 797, 1177, 1709
PflFI	GACNNNGTC	1 cut(s)	944
PleI	GAGTC	3 cut(s)	85, 1233, 1318
PpsI	GAGTC	3 cut(s)	85, 1233, 1318
PscI	ACATGT	1 cut(s)	1442
PshBI	ATTAAT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	1278
Psp124BI	GAGCTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	647, 855
PspGI	CCWGG	2 cut(s)	647, 855
PspN4I	GGNNCC	2 cut(s)	1111, 1379
PspPI	GGNCC	2 cut(s)	1109, 1545
PstI	CTGCAG	1 cut(s)	1558
PsuI	RGATCY	1 cut(s)	1066
PsyI	GACNNNGTC	1 cut(s)	944
RsaI	GTAC	3 cut(s)	15, 222, 1568
RsaNI	GTAC	3 cut(s)	14, 221, 1567
RseI	CAYNNNNRTG	2 cut(s)	968, 1531
SacI	GAGCTC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	66, 366, 1193, 1239, 1415
Sau3AI	GATC	7 cut(s)	583, 598, 1019, 1066, 1150, 1266, 1656
Sau96I	GGNCC	2 cut(s)	1109, 1545
SchI	GAGTC	3 cut(s)	85, 1234, 1318
ScrFI	CCNGG	2 cut(s)	649, 857
SduI	GDGCHC	2 cut(s)	265, 1380
SfaNI	GCATC	1 cut(s)	1173
SfcI	CTRYAG	1 cut(s)	1554
SinI	GGWCC	1 cut(s)	1545
SmiMI	CAYNNNNRTG	2 cut(s)	968, 1531
SphI	GCATGC	1 cut(s)	1735
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	3 cut(s)	448, 753, 1536
SspMI	CTAG	5 cut(s)	621, 836, 882, 1017, 1229
SstI	GAGCTC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	647, 855
StyI	CCWWGG	2 cut(s)	801, 1512
TaaI	ACNGT	2 cut(s)	1222, 1809
TaiI	ACGT	1 cut(s)	1107
TatI	WGTACW	2 cut(s)	220, 1566
TfiI	GAWTC	5 cut(s)	437, 700, 797, 1177, 1709
Tru1I	TTAA	5 cut(s)	66, 366, 1193, 1239, 1415
Tru9I	TTAA	5 cut(s)	66, 366, 1193, 1239, 1415
TscAI	CASTG	4 cut(s)	586, 777, 1227, 1389
TseFI	GTSAC	1 cut(s)	492
Tsp45I	GTSAC	1 cut(s)	492
TspRI	CASTG	4 cut(s)	586, 777, 1227, 1389
Tth111I	GACNNNGTC	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	1545
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	2 cut(s)	1088, 1436
XbaI	TCTAGA	2 cut(s)	1016, 1228
XceI	RCATGY	2 cut(s)	1446, 1735
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	5 cut(s)	621, 836, 882, 1017, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.