Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007088

Physical Location & Seq

Genomic Coordinates Forward (+)

15351630 .. 15358312

Gene Structure 6683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGAATAGCAGAGTACGCACTAATCTTCAGAGCATGAAAGCTGCTCTAAATAATGATAAAAGGGAGAAGAAGATGGAGACTCAGAAGAACAGAATAATGGGTACAGAGAGAACGTTAATCAATCGGCGTAGATCAAACAGAGAAACAAAAATGACCTTGCTACAAGATGTTGATAAACTGAAGAAGAAGCTCAGACATGAAGAAAATGTCCACAGAGCATTGGAAAGGGCTTTTACAAGACCATTAGGAGCTTTACCTCGTCTTCCTCCTTATCTCCCTCCACATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTAGAAGAGGAGGTTGTTCGGCTTGAAGAACAGGTTGTTAATTTTAGACAAGGTCTTTATCAGCAAGCTGTCTATCTATCCACCAAGAGGAATGTGGAAACTTTGAATGATTCAAGTGAGCAGACCCCAATTAAAAGCGCTAAACATCAGAGATCAAAATCTTTGTCACATAATGAGTTCATATCAGCAACATCAGCCTCCAGGCTTCAACCTTCTCTTTCTCGAAGTGTTTCTAGCAGAAGGCTAATGTCTACTGATATTGTCTCTGATCGAACGACCGGGAATTGTTCTAGTAGGCAAGTCAGTGGAAAACAAATTTCCAGGAAACCCAATTATTTATCACCTCTTTCGGAAGATGGGAAAGGAAAAGAAAATCGATTGTGTTCTAATGCGGCTAGGGATAAGCAATCTCCCGACAAAAAAACTACCAAAGCTGTAACCCCAGTGAAAAAGCTTCCCAGCAAACATGAATCCATGGTCAAGTGTTTGGACCCTTTGAAGTTAGAGCTAGACTGCAGATTAGTAGACCAGGAAAGAGGACATGAGAGTTCATCTGGTTCTTCAGATGATAAGGTATCGGAAGCCGATAACACTCCTAATAAAGTGTCCGAGGATATTGTGAAGTGTTTGTCTAGCATTTTTGTGAGGATGAGCAGTTTGAAGGACAAAGTAGAAGAATTGGAGACTTCTAGATCAACATTATCTGCTCATGCAGCAAATGGAGAGACAGGGTTTCGAGATCCTTATGGCATTTGCTTAGAATTCAGAAACATAGACGTTGGTCCCTATAAAAATCTCCGATCAATTGATATTGGTTCAATTGATCTCAGCAGAACAACAAGCGCATTGATTCTGATGAACAGATTAAAGTTTCTACTTGGAAAGCTTTCCTCTGTGAACCTAGAGGGTCTTAACCATCAGCAGAAGCTTGCATTTTGGATTAACACTTATAATTCCTGCATGATGAAGGCATTTTTAGAGCATGGCATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGCAATGATAGATGTCGGGGGACACTCCCTGAACGCAATTACAATTGAGCATTTCATTTTGAGATTGCCTTATCACTTAAAATTTACGTGTCCAAAAGCTGCAAAGAATGATGAGATGAAAGCTCGCAGCATATTTGGATTGGAGTGGTCTGAACCCTTGGTAACCTTTGCACTTTCTTGCGGAAGCTGGTCCTCCCCCGCTGTGAGAGTTTACTCAGCAGCTCATGTTGAAGAAGAGTTGGAAGCAGCAAAAAGGGACTATATACAGGCAGCTGTTGGGATTTCAAGGACAAACAAGTTGATAATCCCCAAGCTGTTGGATTGGTATCTGCTTGACTTTGCAAAGGATTTAGAATCATTGGTTGATTGGATTTGCATGCAGCTACCCAATGAGCTCAGGAATGAGGCTGTTAAAAGCCTTGAAAGAAGGGGAAGAGAGCCCTTTTCACAGTTGGTGCAAATAATGCCATACAATTTCAGCTTCAGGCTGCTCTTACAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

616

Amino Acids

69.77

Weight (kDa)

9.36

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37080 AT4G37080 AT4G37080
fragaria_vesca	FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700
malus_domestica	MD02G1169000.v1.1 MD15G1281000.v1.1
prunus_persica	Prupe.7G136300_v2.0.a1
pyrus_communis	pycom02g13570 pycom15g24450
rosa_chinensis	RchiOBHm_Chr2g0105011
rosa_laevigata	RLG00000017389
rosa_multiflora	Rmu_sc0000641.1_g000026
rosa_roxburghii	Rroxscaffold_2G00138580
rosa_rugosa	Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1
rosa_samantha	Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800
rosa_wichuraiana	Rw2G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1266
AccI	GTMKAC	2 cut(s)	566, 840
AciI	CCGC	3 cut(s)	707, 1524, 1542
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	1 cut(s)	1049
AcsI	RAATTY	3 cut(s)	630, 1076, 1424
AcuI	CTGAAG	5 cut(s)	11, 200, 324, 861, 1810
AfaI	GTAC	2 cut(s)	15, 103
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflIII	ACRYGT	1 cut(s)	1430
AjnI	CCWGG	3 cut(s)	515, 635, 843
Alw21I	GWGCWC	1 cut(s)	1740
Alw26I	GTCTC	5 cut(s)	71, 583, 992, 1034, 1304
AlwI	GGATC	1 cut(s)	1049
Aor51HI	AGCGCT	1 cut(s)	454
ApeKI	GCWGC	9 cut(s)	41, 1028, 1442, 1470, 1562, 1589, 1613, 1723, 1831
ApoI	RAATTY	3 cut(s)	630, 1076, 1424
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp700I	GAANNNNTTC	2 cut(s)	544, 1201
AspLEI	GCGC	2 cut(s)	455, 1160
AspS9I	GGNCC	3 cut(s)	805, 1097, 1533
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	1 cut(s)	648
AvaII	GGWCC	3 cut(s)	805, 1097, 1533
BanII	GRGCYC	2 cut(s)	1740, 1785
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	1740
BbvI	GCAGC	9 cut(s)	28, 1040, 1429, 1482, 1574, 1601, 1625, 1735, 1818
BccI	CCATC	3 cut(s)	67, 665, 1239
BciT130I	CCWGG	3 cut(s)	517, 637, 845
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	5 cut(s)	71, 583, 992, 1034, 1304
BfaI	CTAG	7 cut(s)	549, 606, 711, 824, 948, 1005, 1217
BfmI	CTRYAG	1 cut(s)	829
BfoI	RGCGCY	1 cut(s)	456
Bme1390I	CCNGG	4 cut(s)	517, 595, 637, 845
Bme18I	GGWCC	3 cut(s)	805, 1097, 1533
BmgT120I	GGNCC	3 cut(s)	805, 1097, 1533
BmiI	GGNNCC	2 cut(s)	807, 1099
BmrFI	CCNGG	4 cut(s)	517, 595, 637, 845
BmrI	ACTGGG	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	752
BoxI	GACNNNNGTC	1 cut(s)	1095
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	1739
BpuMI	CCSGG	1 cut(s)	595
Bsa29I	ATCGAT	1 cut(s)	691
BsaAI	YACGTR	1 cut(s)	1431
BsaBI	GATNNNNATC	2 cut(s)	472, 1668
BsaJI	CCNNGG	3 cut(s)	789, 924, 1500
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	1353
Bse8I	GATNNNNATC	2 cut(s)	472, 1668
BseBI	CCWGG	3 cut(s)	517, 637, 845
BseCI	ATCGAT	1 cut(s)	691
BseDI	CCNNGG	3 cut(s)	789, 924, 1500
BseGI	GGATG	1 cut(s)	969
BseJI	GATNNNNATC	2 cut(s)	472, 1668
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	1353
BseMII	CTCAG	6 cut(s)	95, 205, 1156, 1299, 1572, 1753
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	9 cut(s)	28, 1040, 1429, 1482, 1574, 1601, 1625, 1735, 1818
BseYI	CCCAGC	1 cut(s)	773
Bsh1285I	CGRYCG	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	1740
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	3 cut(s)	1083, 1377, 1613
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	5 cut(s)	71, 583, 992, 1034, 1304
BsmFI	GGGAC	3 cut(s)	1083, 1377, 1613
Bsp1286I	GDGCHC	2 cut(s)	1740, 1785
Bsp143I	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	3 cut(s)	707, 1524, 1542
BspCNI	CTCAG	6 cut(s)	94, 204, 1155, 1300, 1571, 1752
BspDI	ATCGAT	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	807, 1099
BspMAI	CTGCAG	1 cut(s)	833
BspPI	GGATC	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	1353
BsrI	ACTGG	1 cut(s)	758
BssECI	CCNNGG	3 cut(s)	789, 924, 1500
BssMI	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
BssT1I	CCWWGG	2 cut(s)	789, 1500
Bst2UI	CCWGG	3 cut(s)	517, 637, 845
Bst4CI	ACNGT	1 cut(s)	1794
Bst6I	CTCTTC	3 cut(s)	315, 1572, 1771
BstAPI	GCANNNNNTGC	1 cut(s)	1807
BstBAI	YACGTR	1 cut(s)	1431
BstC8I	GCNNGC	4 cut(s)	381, 1245, 1468, 1721
BstDEI	CTNAG	7 cut(s)	81, 191, 1072, 1142, 1308, 1558, 1739
BstDSI	CCRYGG	1 cut(s)	789
BstEII	GGTNACC	1 cut(s)	1504
BstF5I	GGATG	1 cut(s)	969
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	455, 1160
BstKTI	GATC	7 cut(s)	134, 470, 586, 1010, 1057, 1118, 1141
BstMAI	GTCTC	5 cut(s)	71, 583, 992, 1034, 1304
BstMBI	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 308, 509, 1028, 1807, 1840
BstNI	CCWGG	3 cut(s)	517, 637, 845
BstNSI	RCATGY	1 cut(s)	1723
BstPAI	GACNNNNGTC	1 cut(s)	1095
BstPI	GGTNACC	1 cut(s)	1504
BstSCI	CCNGG	4 cut(s)	515, 593, 635, 843
BstSFI	CTRYAG	1 cut(s)	829
BstV1I	GCAGC	9 cut(s)	28, 1040, 1429, 1482, 1574, 1601, 1625, 1735, 1818
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	1 cut(s)	1660
BstYI	RGATCY	1 cut(s)	1054
Bsu15I	ATCGAT	1 cut(s)	691
BsuTUI	ATCGAT	1 cut(s)	691
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	1 cut(s)	969
BtsIMutI	CAGTG	2 cut(s)	625, 765
Cac8I	GCNNGC	4 cut(s)	381, 1245, 1468, 1721
CfoI	GCGC	2 cut(s)	455, 1160
Cfr13I	GGNCC	3 cut(s)	805, 1097, 1533
ClaI	ATCGAT	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	14, 102
CviQI	GTAC	2 cut(s)	14, 102
DdeI	CTNAG	7 cut(s)	81, 191, 1072, 1142, 1308, 1558, 1739
DpnI	GATC	7 cut(s)	133, 469, 585, 1009, 1056, 1117, 1140
DpnII	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
Eam1104I	CTCTTC	3 cut(s)	315, 1572, 1771
EarI	CTCTTC	3 cut(s)	315, 1572, 1771
Ecl136II	GAGCTC	1 cut(s)	1738
Eco130I	CCWWGG	2 cut(s)	789, 1500
Eco24I	GRGCYC	2 cut(s)	1740, 1785
Eco47I	GGWCC	3 cut(s)	805, 1097, 1533
Eco47III	AGCGCT	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	1738
Eco57I	CTGAAG	5 cut(s)	11, 200, 324, 861, 1810
Eco91I	GGTNACC	1 cut(s)	1504
EcoICRI	GAGCTC	1 cut(s)	1738
EcoO65I	GGTNACC	1 cut(s)	1504
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	3 cut(s)	515, 635, 843
EcoT14I	CCWWGG	2 cut(s)	789, 1500
EcoT38I	GRGCYC	2 cut(s)	1740, 1785
ErhI	CCWWGG	2 cut(s)	789, 1500
FaqI	GGGAC	3 cut(s)	1083, 1377, 1613
FauI	CCCGC	1 cut(s)	1549
FblI	GTMKAC	2 cut(s)	566, 840
FokI	GGATG	1 cut(s)	976
FriOI	GRGCYC	2 cut(s)	1740, 1785
FspBI	CTAG	7 cut(s)	549, 606, 711, 824, 948, 1005, 1217
GlaI	GCGC	2 cut(s)	454, 1159
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	456
HapII	CCGG	1 cut(s)	594
HhaI	GCGC	2 cut(s)	455, 1160
Hin6I	GCGC	2 cut(s)	453, 1158
HinP1I	GCGC	2 cut(s)	453, 1158
HindIII	AAGCTT	3 cut(s)	767, 1199, 1241
HinfI	GANTC	6 cut(s)	79, 425, 785, 1165, 1312, 1697
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	648
Hpy166II	GTNNAC	5 cut(s)	211, 567, 841, 1213, 1555
Hpy188III	TCNNGA	6 cut(s)	537, 728, 1005, 1052, 1316, 1741
Hpy8I	GTNNAC	5 cut(s)	211, 567, 841, 1213, 1555
HpyAV	CCTTC	5 cut(s)	537, 549, 970, 1276, 1764
HpyCH4III	ACNGT	1 cut(s)	1794
HpyCH4IV	ACGT	3 cut(s)	113, 1092, 1430
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 308, 509, 1028, 1807, 1840
HpyF3I	CTNAG	7 cut(s)	81, 191, 1072, 1142, 1308, 1558, 1739
HpySE526I	ACGT	3 cut(s)	113, 1092, 1430
HspAI	GCGC	2 cut(s)	453, 1158
Kzo9I	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	9 cut(s)	28, 1040, 1429, 1482, 1574, 1601, 1625, 1735, 1818
MaeI	CTAG	7 cut(s)	549, 606, 711, 824, 948, 1005, 1217
MaeII	ACGT	3 cut(s)	113, 1092, 1430
MaeIII	GTNAC	3 cut(s)	480, 751, 1504
MalI	GATC	7 cut(s)	133, 469, 585, 1009, 1056, 1117, 1140
MboI	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
MfeI	CAATTG	3 cut(s)	1119, 1134, 1386
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	2 cut(s)	1740, 1785
MlyI	GAGTC	2 cut(s)	73, 1306
MmeI	TCCRAC	2 cut(s)	1563, 1641
MroXI	GAANNNNTTC	2 cut(s)	544, 1201
MseI	TTAA	8 cut(s)	116, 354, 447, 1181, 1227, 1257, 1421, 1755
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	2 cut(s)	1544, 1616
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	4 cut(s)	517, 595, 637, 845
MunI	CAATTG	3 cut(s)	1119, 1134, 1386
MvaI	CCWGG	3 cut(s)	517, 637, 845
MwoI	GCNNNNNNNGC	6 cut(s)	15, 308, 509, 1028, 1807, 1840
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
NlaIV	GGNNCC	2 cut(s)	807, 1099
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	1723
PaeI	GCATGC	1 cut(s)	1723
PdmI	GAANNNNTTC	2 cut(s)	544, 1201
PfeI	GAWTC	4 cut(s)	425, 785, 1165, 1697
PflFI	GACNNNGTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	635
PleI	GAGTC	2 cut(s)	73, 1306
PpsI	GAGTC	2 cut(s)	73, 1306
Ppu21I	YACGTR	1 cut(s)	1431
PshAI	GACNNNNGTC	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	1266
Psp124BI	GAGCTC	1 cut(s)	1740
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	3 cut(s)	515, 635, 843
PspEI	GGTNACC	1 cut(s)	1504
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	3 cut(s)	515, 635, 843
PspN4I	GGNNCC	2 cut(s)	807, 1099
PspPI	GGNCC	3 cut(s)	805, 1097, 1533
PstI	CTGCAG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	1054
PsyI	GACNNNGTC	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	1616
RsaI	GTAC	2 cut(s)	15, 103
RsaNI	GTAC	2 cut(s)	14, 102
RseI	CAYNNNNRTG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	1740
SaqAI	TTAA	8 cut(s)	116, 354, 447, 1181, 1227, 1257, 1421, 1755
Sau3AI	GATC	7 cut(s)	131, 467, 583, 1007, 1054, 1115, 1138
Sau96I	GGNCC	3 cut(s)	805, 1097, 1533
SchI	GAGTC	2 cut(s)	73, 1306
ScrFI	CCNGG	4 cut(s)	517, 595, 637, 845
SduI	GDGCHC	2 cut(s)	1740, 1785
SfcI	CTRYAG	1 cut(s)	829
SinI	GGWCC	3 cut(s)	805, 1097, 1533
SmiMI	CAYNNNNRTG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	1723
SsiI	CCGC	3 cut(s)	707, 1524, 1542
SspMI	CTAG	7 cut(s)	549, 606, 711, 824, 948, 1005, 1217
SstI	GAGCTC	1 cut(s)	1740
StyD4I	CCNGG	4 cut(s)	515, 593, 635, 843
StyI	CCWWGG	2 cut(s)	789, 1500
TaaI	ACNGT	1 cut(s)	1794
TaiI	ACGT	3 cut(s)	116, 1095, 1433
TaqI	TCGA	4 cut(s)	538, 586, 691, 1051
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	4 cut(s)	425, 785, 1165, 1697
Tru1I	TTAA	8 cut(s)	116, 354, 447, 1181, 1227, 1257, 1421, 1755
Tru9I	TTAA	8 cut(s)	116, 354, 447, 1181, 1227, 1257, 1421, 1755
TscAI	CASTG	2 cut(s)	625, 765
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	9 cut(s)	41, 1028, 1442, 1470, 1562, 1589, 1613, 1723, 1831
Tsp45I	GTSAC	1 cut(s)	480
TspRI	CASTG	2 cut(s)	625, 765
Tth111I	GACNNNGTC	1 cut(s)	366
VpaK11BI	GGWCC	3 cut(s)	805, 1097, 1533
XapI	RAATTY	3 cut(s)	630, 1076, 1424
XbaI	TCTAGA	1 cut(s)	1004
XceI	RCATGY	1 cut(s)	1723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	566, 840
XmnI	GAANNNNTTC	2 cut(s)	544, 1201
XspI	CTAG	7 cut(s)	549, 606, 711, 824, 948, 1005, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.