Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007088

Physical Location & Seq

Genomic Coordinates Reverse (-)

16040729 .. 16046527

Gene Structure 5799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGACTCAGAGGAAGAACAGAGTGATGGGTTCTGAGAGAACTGGAATCAATCGACGTAAATCAAATAGAGAAAGAAAAGTGGCCTTACTGCAAGATGTTGATAAGCTGAAGAAGAAGCTGAGGCATGAAGAAAATGTTCATAGAGCTTTGGAGAGAGCTTTCACAAGACCATTAGGAGCTTTGCCTCGTCTTCCTCCTTATCTTCCTCCATATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTAGAAGAGGAGGTTGTTAGGCTTGAAGAACAAGTTGTGAATTTTAGACAAGGTCTATACCAGCAAGCTGTGTATCTATCTTCAAAGAGGAATGTGGAAAATTTGAGTGAGTCTCCAATTGAGCAGACCACCCCAATTAGAAGTTCTAAGCATCAGAGATCAAAATCTATGTCACATAATGAGTTCACATCAGCAATATCAGCCACCAGGCTTAGTCAACCTTCTCTTGGTAGAAGTGCTTCTAGTCGAAAGCTACTGTCCACTGATATCGTCTCCGGGAATTGCTCAAGCAGGCAAGTCATTAATGGAAAACAAATCACCAGGAAGCCCATTTCATCCTGCACACCTATTTTAGAAGATGTGAGAGGGAAAGAGAATCAGTTGTGTACTGATGTGGTGAGGGATAAGCAATCACCTGACAAGAAAGTTGCCAAAACTGTATCCACACCAGTGAAGAAAACTCCCACTAAACATGAATCCATGCCGAAGTGTTTGGATCCTTCGAAGTTAGAGCTAGAGTGCAGATTAGTAGACCAGGAAAAGGCGCACGAGAGTTCATCCGGTTCTTCAGATGATAGGACAATGGAGACAGATAACACTCCGAATAAAGTATCTGAGGAGATTGTGAAGTGCTTGTCTAGCATTTTTGTGAGGATGAGCACTTTAAAGGATAAAGTAGAGGAATTGGAGAATGGAGAGACGGGGTTTCGAGATCCTTATGAGATTGGTTTAGAATCGAGGAAAATAGATGTTAGTCCCTATCAACATCTGTGTTCAATTGGTATTGGTTCAATTGATCTCAACAGAACAGCAAGTGCATTGATGCTGATACACAGACTAAAGTTTCTACTTGGAAAGCTTGCTTCTGTGAACCTAGAGGGTCTAACCCATCAAGAGAAGCTTGCATTTTGGATCAACACTTACAATTCCTGCATGATGAAGGCTTTTCTAGAGCATGGGATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGTAAGGTTAATTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM131_like

Protein Analysis

422

Amino Acids

47.73

Weight (kDa)

9.23

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	23 - 104	2.4e-23	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	375 - 417	1.6e-10	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37080 AT4G37080 AT4G37080
fragaria_vesca	FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700
malus_domestica	MD02G1169000.v1.1 MD15G1281000.v1.1
prunus_persica	Prupe.7G136300_v2.0.a1
pyrus_communis	pycom02g13570 pycom15g24450
rosa_chinensis	RchiOBHm_Chr2g0105011
rosa_laevigata	RLG00000017389
rosa_multiflora	Rmu_sc0000641.1_g000026
rosa_roxburghii	Rroxscaffold_2G00138580
rosa_rugosa	Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1
rosa_samantha	Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800
rosa_wichuraiana	Rw2G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	777
AclWI	GGATC	4 cut(s)	737, 750, 953, 1166
AcsI	RAATTY	2 cut(s)	286, 346
AcuI	CTGAAG	3 cut(s)	131, 255, 798
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	473, 787
AgsI	TTSAA	4 cut(s)	272, 330, 1023, 1038
AjnI	CCWGG	3 cut(s)	452, 566, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AleI	CACNNNNGTG	1 cut(s)	695
Alw21I	GWGCWC	1 cut(s)	908
Alw26I	GTCTC	5 cut(s)	363, 523, 827, 938, 1208
AlwI	GGATC	4 cut(s)	737, 750, 953, 1166
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	286, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	2 cut(s)	138, 484
AspLEI	GCGC	1 cut(s)	793
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	556, 651, 655
AsuII	TTCGAA	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	742
BarI	GAAGNNNNNNTAC	2 cut(s)	469, 501
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	908
BbvCI	CCTCAGC	1 cut(s)	122
BccI	CCATC	2 cut(s)	22, 1143
BciT130I	CCWGG	3 cut(s)	454, 568, 782
BciVI	GTATCC	2 cut(s)	697, 1200
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	363, 523, 827, 938, 1208
BfaI	CTAG	5 cut(s)	489, 761, 885, 1121, 1196
BfuI	GTATCC	2 cut(s)	697, 1200
Bme1390I	CCNGG	4 cut(s)	454, 523, 568, 782
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	4 cut(s)	454, 523, 568, 782
BmsI	GCATC	2 cut(s)	406, 1059
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 787
Bse1I	ACTGG	2 cut(s)	49, 695
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	3 cut(s)	454, 568, 782
BseGI	GGATG	3 cut(s)	581, 803, 906
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	473, 787
BseMII	CTCAG	5 cut(s)	23, 27, 113, 852, 1203
BseNI	ACTGG	2 cut(s)	49, 695
BseRI	GAGGAG	2 cut(s)	269, 878
BsgI	GTGCAG	2 cut(s)	571, 787
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	908
BsiSI	CCGG	2 cut(s)	522, 807
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	473, 787
BsmAI	GTCTC	5 cut(s)	363, 523, 827, 938, 1208
BsmBI	CGTCTC	2 cut(s)	523, 938
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp143I	GATC	5 cut(s)	404, 742, 958, 1042, 1158
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	5 cut(s)	22, 28, 114, 853, 1204
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	4 cut(s)	737, 750, 953, 1166
BspT104I	TTCGAA	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	49, 695
BssMI	GATC	5 cut(s)	404, 742, 958, 1042, 1158
BssSI	CACGAG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	3 cut(s)	454, 568, 782
Bst4CI	ACNGT	2 cut(s)	504, 685
Bst6I	CTCTTC	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	312, 539, 1107, 1149
BstDEI	CTNAG	7 cut(s)	9, 36, 122, 393, 458, 861, 1212
BstF5I	GGATG	3 cut(s)	581, 803, 906
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	5 cut(s)	407, 745, 961, 1045, 1161
BstMAI	GTCTC	5 cut(s)	363, 523, 827, 938, 1208
BstMBI	GATC	5 cut(s)	404, 742, 958, 1042, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 446, 885
BstNI	CCWGG	3 cut(s)	454, 568, 782
BstSCI	CCNGG	4 cut(s)	452, 521, 566, 780
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	742, 958
BstYI	RGATCY	2 cut(s)	742, 958
BsuI	GTATCC	2 cut(s)	697, 1200
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	581, 803, 906
BtsIMutI	CAGTG	2 cut(s)	507, 702
Cac8I	GCNNGC	4 cut(s)	312, 539, 1107, 1149
CfoI	GCGC	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	5 cut(s)	128, 719, 727, 1180, 1202
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	7 cut(s)	9, 36, 122, 393, 458, 861, 1212
DpnI	GATC	5 cut(s)	406, 744, 960, 1044, 1160
DpnII	GATC	5 cut(s)	404, 742, 958, 1042, 1158
DraI	TTTAAA	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	3 cut(s)	131, 255, 798
EcoRII	CCWGG	3 cut(s)	452, 566, 780
EcoRV	GATATC	1 cut(s)	514
Esp3I	CGTCTC	2 cut(s)	523, 938
FaeI	CATG	5 cut(s)	131, 722, 730, 1183, 1205
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	5 cut(s)	127, 718, 726, 1179, 1201
FblI	GTMKAC	1 cut(s)	777
FokI	GGATG	3 cut(s)	568, 790, 913
FspBI	CTAG	5 cut(s)	489, 761, 885, 1121, 1196
GlaI	GCGC	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	522, 807
HhaI	GCGC	1 cut(s)	793
Hin1II	CATG	5 cut(s)	131, 722, 730, 1183, 1205
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	1 cut(s)	464
HindII	GTYRAC	1 cut(s)	464
HindIII	AAGCTT	2 cut(s)	1103, 1145
HinfI	GANTC	7 cut(s)	7, 48, 356, 622, 722, 980, 1216
HpaII	CCGG	2 cut(s)	522, 807
HphI	GGTGA	3 cut(s)	556, 651, 655
Hpy166II	GTNNAC	6 cut(s)	432, 464, 507, 633, 778, 1117
Hpy188I	TCNGA	6 cut(s)	12, 37, 402, 817, 849, 862
Hpy188III	TCNNGA	4 cut(s)	956, 1139, 1196, 1220
Hpy8I	GTNNAC	6 cut(s)	432, 464, 507, 633, 778, 1117
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	477, 756, 1180
HpyCH4III	ACNGT	2 cut(s)	504, 685
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	7 cut(s)	94, 588, 768, 1064, 1151, 1179, 1243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 446, 885
HpyF3I	CTNAG	7 cut(s)	9, 36, 122, 393, 458, 861, 1212
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	5 cut(s)	131, 722, 730, 1183, 1205
HspAI	GCGC	1 cut(s)	791
Kzo9I	GATC	5 cut(s)	404, 742, 958, 1042, 1158
LmnI	GCTCC	1 cut(s)	179
LweI	GCATC	2 cut(s)	406, 1059
MaeI	CTAG	5 cut(s)	489, 761, 885, 1121, 1196
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	5 cut(s)	406, 744, 960, 1044, 1160
MboI	GATC	5 cut(s)	404, 742, 958, 1042, 1158
MfeI	CAATTG	3 cut(s)	363, 1023, 1038
MflI	RGATCY	2 cut(s)	742, 958
MhlI	GDGCHC	1 cut(s)	908
MlyI	GAGTC	2 cut(s)	365, 1210
MroXI	GAANNNNTTC	2 cut(s)	138, 484
MseI	TTAA	3 cut(s)	549, 911, 1256
MslI	CAYNNNNRTG	2 cut(s)	695, 893
MspI	CCGG	2 cut(s)	522, 807
MspR9I	CCNGG	4 cut(s)	454, 523, 568, 782
MunI	CAATTG	3 cut(s)	363, 1023, 1038
MvaI	CCWGG	3 cut(s)	454, 568, 782
MwoI	GCNNNNNNNGC	3 cut(s)	239, 446, 885
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	5 cut(s)	404, 742, 958, 1042, 1158
NlaIII	CATG	5 cut(s)	131, 722, 730, 1183, 1205
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	417
NspV	TTCGAA	1 cut(s)	749
OliI	CACNNNNGTG	1 cut(s)	695
PdmI	GAANNNNTTC	2 cut(s)	138, 484
PfeI	GAWTC	4 cut(s)	48, 622, 722, 980
PflFI	GACNNNGTC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	521
PleI	GAGTC	2 cut(s)	364, 1210
PpsI	GAGTC	2 cut(s)	364, 1210
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	452, 566, 780
PspGI	CCWGG	3 cut(s)	452, 566, 780
PspN4I	GGNNCC	1 cut(s)	744
PsuI	RGATCY	2 cut(s)	742, 958
PsyI	GACNNNGTC	1 cut(s)	297
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
RseI	CAYNNNNRTG	2 cut(s)	695, 893
SaqAI	TTAA	3 cut(s)	549, 911, 1256
Sau3AI	GATC	5 cut(s)	404, 742, 958, 1042, 1158
SchI	GAGTC	2 cut(s)	365, 1210
ScrFI	CCNGG	4 cut(s)	454, 523, 568, 782
SduI	GDGCHC	1 cut(s)	908
SfaNI	GCATC	2 cut(s)	406, 1059
SfuI	TTCGAA	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	695, 893
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SspMI	CTAG	5 cut(s)	489, 761, 885, 1121, 1196
StyD4I	CCNGG	4 cut(s)	452, 521, 566, 780
TaaI	ACNGT	2 cut(s)	504, 685
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	5 cut(s)	55, 493, 749, 955, 983
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	4 cut(s)	48, 622, 722, 980
Tru1I	TTAA	3 cut(s)	549, 911, 1256
Tru9I	TTAA	3 cut(s)	549, 911, 1256
TscAI	CASTG	2 cut(s)	514, 702
TseFI	GTSAC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	6 cut(s)	131, 144, 570, 735, 792, 1199
TspRI	CASTG	2 cut(s)	514, 702
Tth111I	GACNNNGTC	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	286, 346
XbaI	TCTAGA	1 cut(s)	1195
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	138, 484
XspI	CTAG	5 cut(s)	489, 761, 885, 1121, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.