Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007088

Physical Location & Seq

Genomic Coordinates Reverse (-)

16015157 .. 16020770

Gene Structure 5614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGAAAGCTGCTTCAAATAATGATAAAGAGAAGATGGAGACTCAGAGGAAGAACAGAGTGATGGGTTCTGAGAGAACTGGAATCAATCGACGTAAATCAAATAGAGAAAGAAAAGTGGCCTTACTGCAAGATGTTGATAAGCTGAAGAAGAAGCTCAGGCATGAAGAAAATGTTCATAGAGCTTTGGAGAGAGCTTTCACAAGACCATTAGGAGCTTTGCCTCGTCTTCCTCCTTATCTTCCTCCATATACATTAGAACTTCTGGCTGAAGTAGCTGTTTTAGAAGAGGAGGTTGTTAGGCTTGAAGAACAAGTTGTGAATTTTAGACAAGGTCTATACCAGCAAGCTGTGTATCTATCTTCAAAGAGGAATGTGGAAAATTTGAGTGAGTCTCCAATTGAGCAGACCACCCCAATTAGAAGTTCTAAGCATCAGAGATCAAAATCTATGTCACATAATGAGTTCACATCAGCAATATCAGCCACCAGGCTTAGTCAACCTTCTCTCGGTAGAAGTGCTTCTAGTCGAAAGCTACTGTCCACTGATATCGTCTCCGGGAATTGCTCAAGTAGGCAAGTCATTAATGGAAAACAAATCACCAGGAAGCCCATTTCATCCTGCACACCTATTTTAGAAGATGTGAGAGGGAAAGAGAATCGGTTGTGTACTAATGTGGTGAGGGATAAGCAATCACCTGACAAGAAAATTGCCAAAACTGTATCCACACCAGTGAAGAAAACTCCCACTAAACATGAATCCGTGCCGAAGTGTTTGGATCCTTTGAAGTTAGAGCTAGAGTGCAGATTAGTAGACCAGGAAAAGGCACATGAGAGTTCGTCCGGTTCTTCAGATGATAGGACAATGGAGACAGATAACACTCCGAATAAAGTATCTGAGGAGATTGTGAAGTGCTTGTCTAGCATTTTTGTGAGGATGAGCACTTTAAAGGATAAAGTAGAGGAATTGGAGAATGGAGAGACTGGGTTTCGGGATCCTTATGAGATTGGTTTAGAATCGAGAAAAGTAGATGTTAGTCCCTATCAACATCTGTTTTCAATTAGTATTGGTTCAATTGATCTCAACAGAACAACAAGTGCATTGATGCTGATAGACAGACTAAAGTTTCTACTTGGAAAGCTTGCTTCTGTGAACCTAGAGGGTCTAACCCATCAAGAGAAGCTTGCATTTTGGATCAACACTTACAATTCCTGCTTGATGAAGGCTTTTCTAGAGCATGGGATACCTGAGACTCCTGAAATGGTTGTAGCACTAATGCAAAAGGCAACAATAGCTGTTGGGGGACATTCTCTGAATCCAATTACAATTGAGCATTTCATTTTGAGATTGCCTTATCACTTAAAATTTACATGCCCAAAAGCTGCGAAAAATGATGAGATGAAAGCTCGCAGCATATTTGGATTAGAGTGGTCTGAACCCTTGGTTACATTTGCACTTTCTTGCGGAAGCTGGTCCTCTCCTGCTGTGAGGGTGTACTCTGCAACTCATGTCGAAGATGAGCTAGAAGCAGCGAAAAGGGACTATTTACAGGCAGCAGTTGGAATTTCAAGTGCAAACAAGTTGATAATCCCCAAGCTATTGGATTGGTATCTACTTGATTTTGCAAAGGATTTGGAATCATTGGTAGATTGGATTTGCATGCAGCTACCAAATGAATTAAGAAATGAGGCAGTTAAAAGCCTTGAAAGAAGGGGAAGAGAGCCTTTTTCACAGTTGGTGCAAATAATGCCATACAATTTCAGCTTCAGGCTGCTCTTACAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM131_like

Protein Analysis

595

Amino Acids

67.32

Weight (kDa)

9.1

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	34 - 115	4e-23	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	386 - 515	3.4e-39	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37080 AT4G37080 AT4G37080
fragaria_vesca	FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700
malus_domestica	MD02G1169000.v1.1 MD15G1281000.v1.1
prunus_persica	Prupe.7G136300_v2.0.a1
pyrus_communis	pycom02g13570 pycom15g24450
rosa_chinensis	RchiOBHm_Chr2g0105011
rosa_laevigata	RLG00000017389
rosa_multiflora	Rmu_sc0000641.1_g000026
rosa_roxburghii	Rroxscaffold_2G00138580
rosa_rugosa	Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1
rosa_samantha	Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800
rosa_wichuraiana	Rw2G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	810
AciI	CCGC	1 cut(s)	1461
AclWI	GGATC	5 cut(s)	770, 783, 986, 999, 1199
AcsI	RAATTY	4 cut(s)	319, 379, 1361, 1560
AcuI	CTGAAG	4 cut(s)	164, 288, 831, 1747
AfaI	GTAC	2 cut(s)	667, 1493
AfiI	CCNNNNNNNGG	2 cut(s)	506, 820
AgsI	TTSAA	8 cut(s)	15, 305, 363, 784, 1056, 1071, 1566, 1703
AjnI	CCWGG	3 cut(s)	485, 599, 813
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AleI	CACNNNNGTG	1 cut(s)	728
Alw21I	GWGCWC	1 cut(s)	941
Alw26I	GTCTC	6 cut(s)	32, 396, 556, 860, 971, 1241
AlwI	GGATC	5 cut(s)	770, 783, 986, 999, 1199
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	7 cut(s)	8, 1379, 1407, 1526, 1550, 1660, 1768
ApoI	RAATTY	4 cut(s)	319, 379, 1361, 1560
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	2 cut(s)	171, 517
AspS9I	GGNCC	1 cut(s)	1470
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	3 cut(s)	589, 684, 688
AvaII	GGWCC	1 cut(s)	1470
BamHI	GGATCC	2 cut(s)	775, 991
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	941
BbvI	GCAGC	6 cut(s)	1366, 1419, 1538, 1562, 1672, 1755
BccI	CCATC	3 cut(s)	28, 55, 1176
BciT130I	CCWGG	3 cut(s)	487, 601, 815
BciVI	GTATCC	2 cut(s)	730, 1233
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	6 cut(s)	32, 396, 556, 860, 971, 1241
BfaI	CTAG	6 cut(s)	522, 794, 918, 1154, 1229, 1520
BfuI	GTATCC	2 cut(s)	730, 1233
BisI	GCNGC	7 cut(s)	9, 1380, 1408, 1527, 1551, 1661, 1769
BlsI	GCNGC	7 cut(s)	10, 1381, 1409, 1528, 1552, 1662, 1770
Bme1390I	CCNGG	4 cut(s)	487, 556, 601, 815
Bme18I	GGWCC	1 cut(s)	1470
BmgT120I	GGNCC	1 cut(s)	1470
BmiI	GGNNCC	2 cut(s)	777, 993
BmrFI	CCNGG	4 cut(s)	487, 556, 601, 815
BmrI	ACTGGG	1 cut(s)	990
BmsI	GCATC	2 cut(s)	439, 1092
BmuI	ACTGGG	1 cut(s)	990
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	556
BsaBI	GATNNNNATC	2 cut(s)	442, 1605
BsaJI	CCNNGG	1 cut(s)	1437
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 820
Bse1I	ACTGG	3 cut(s)	82, 728, 985
Bse8I	GATNNNNATC	2 cut(s)	442, 1605
BseBI	CCWGG	3 cut(s)	487, 601, 815
BseDI	CCNNGG	1 cut(s)	1437
BseGI	GGATG	2 cut(s)	614, 939
BseJI	GATNNNNATC	2 cut(s)	442, 1605
BseLI	CCNNNNNNNGG	2 cut(s)	506, 820
BseMII	CTCAG	5 cut(s)	56, 60, 169, 885, 1236
BseNI	ACTGG	3 cut(s)	82, 728, 985
BseRI	GAGGAG	2 cut(s)	302, 911
BseXI	GCAGC	6 cut(s)	1366, 1419, 1538, 1562, 1672, 1755
BsgI	GTGCAG	2 cut(s)	604, 820
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	2 cut(s)	555, 840
BslFI	GGGAC	3 cut(s)	1020, 1314, 1550
BslI	CCNNNNNNNGG	2 cut(s)	506, 820
BsmAI	GTCTC	6 cut(s)	32, 396, 556, 860, 971, 1241
BsmBI	CGTCTC	1 cut(s)	556
BsmFI	GGGAC	3 cut(s)	1020, 1314, 1550
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	941
Bsp143I	GATC	5 cut(s)	437, 775, 991, 1075, 1191
BspACI	CCGC	1 cut(s)	1461
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	5 cut(s)	55, 61, 168, 886, 1237
BspLI	GGNNCC	2 cut(s)	777, 993
BspPI	GGATC	5 cut(s)	770, 783, 986, 999, 1199
BsrI	ACTGG	3 cut(s)	82, 728, 985
BssECI	CCNNGG	1 cut(s)	1437
BssMI	GATC	5 cut(s)	437, 775, 991, 1075, 1191
BssT1I	CCWWGG	1 cut(s)	1437
Bst2UI	CCWGG	3 cut(s)	487, 601, 815
Bst4CI	ACNGT	3 cut(s)	537, 718, 1731
Bst6I	CTCTTC	2 cut(s)	279, 1708
BstAPI	GCANNNNNTGC	1 cut(s)	1744
BstC8I	GCNNGC	5 cut(s)	345, 1140, 1182, 1405, 1658
BstDEI	CTNAG	7 cut(s)	42, 69, 155, 426, 491, 894, 1245
BstF5I	GGATG	2 cut(s)	614, 939
BstKTI	GATC	5 cut(s)	440, 778, 994, 1078, 1194
BstMAI	GTCTC	6 cut(s)	32, 396, 556, 860, 971, 1241
BstMBI	GATC	5 cut(s)	437, 775, 991, 1075, 1191
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 479, 918, 1289, 1744, 1777
BstNI	CCWGG	3 cut(s)	487, 601, 815
BstNSI	RCATGY	2 cut(s)	1371, 1660
BstSCI	CCNGG	4 cut(s)	485, 554, 599, 813
BstV1I	GCAGC	6 cut(s)	1366, 1419, 1538, 1562, 1672, 1755
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	775, 991
BstXI	CCANNNNNNTGG	1 cut(s)	1597
BstYI	RGATCY	2 cut(s)	775, 991
BsuI	GTATCC	2 cut(s)	730, 1233
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	614, 939
BtsIMutI	CAGTG	2 cut(s)	540, 735
Cac8I	GCNNGC	5 cut(s)	345, 1140, 1182, 1405, 1658
Cfr13I	GGNCC	1 cut(s)	1470
Csp6I	GTAC	2 cut(s)	666, 1492
CviAII	CATG	7 cut(s)	161, 752, 827, 1235, 1368, 1505, 1657
CviQI	GTAC	2 cut(s)	666, 1492
DdeI	CTNAG	7 cut(s)	42, 69, 155, 426, 491, 894, 1245
DpnI	GATC	5 cut(s)	439, 777, 993, 1077, 1193
DpnII	GATC	5 cut(s)	437, 775, 991, 1075, 1191
DraI	TTTAAA	1 cut(s)	945
Eam1104I	CTCTTC	2 cut(s)	279, 1708
EarI	CTCTTC	2 cut(s)	279, 1708
Eco130I	CCWWGG	1 cut(s)	1437
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	1470
Eco57I	CTGAAG	4 cut(s)	164, 288, 831, 1747
EcoRII	CCWGG	3 cut(s)	485, 599, 813
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	1437
ErhI	CCWWGG	1 cut(s)	1437
Esp3I	CGTCTC	1 cut(s)	556
FaeI	CATG	7 cut(s)	164, 755, 830, 1238, 1371, 1508, 1660
FalI	AAGNNNNNCTT	4 cut(s)	1164, 1196, 1705, 1737
FaqI	GGGAC	3 cut(s)	1020, 1314, 1550
FatI	CATG	7 cut(s)	160, 751, 826, 1234, 1367, 1504, 1656
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	7 cut(s)	9, 1380, 1408, 1527, 1551, 1661, 1769
FokI	GGATG	2 cut(s)	601, 946
Fsp4HI	GCNGC	7 cut(s)	9, 1380, 1408, 1527, 1551, 1661, 1769
FspBI	CTAG	6 cut(s)	522, 794, 918, 1154, 1229, 1520
GluI	GCNGC	7 cut(s)	9, 1380, 1408, 1527, 1551, 1661, 1769
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	555, 840
Hin1II	CATG	7 cut(s)	164, 755, 830, 1238, 1371, 1508, 1660
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HindIII	AAGCTT	2 cut(s)	1136, 1178
HinfI	GANTC	9 cut(s)	40, 81, 389, 655, 755, 1013, 1249, 1312, 1634
HpaII	CCGG	2 cut(s)	555, 840
HphI	GGTGA	3 cut(s)	589, 684, 688
Hpy166II	GTNNAC	7 cut(s)	465, 497, 540, 666, 811, 1150, 1492
Hpy188I	TCNGA	8 cut(s)	45, 70, 435, 850, 882, 895, 1311, 1432
Hpy188III	TCNNGA	5 cut(s)	989, 1017, 1172, 1229, 1253
Hpy8I	GTNNAC	7 cut(s)	465, 497, 540, 666, 811, 1150, 1492
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	510, 1213, 1701
HpyCH4III	ACNGT	3 cut(s)	537, 718, 1731
HpyCH4IV	ACGT	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 479, 918, 1289, 1744, 1777
HpyF3I	CTNAG	7 cut(s)	42, 69, 155, 426, 491, 894, 1245
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	7 cut(s)	164, 755, 830, 1238, 1371, 1508, 1660
Kzo9I	GATC	5 cut(s)	437, 775, 991, 1075, 1191
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	6 cut(s)	1366, 1419, 1538, 1562, 1672, 1755
LweI	GCATC	2 cut(s)	439, 1092
MaeI	CTAG	6 cut(s)	522, 794, 918, 1154, 1229, 1520
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	450, 1441
MalI	GATC	5 cut(s)	439, 777, 993, 1077, 1193
MboI	GATC	5 cut(s)	437, 775, 991, 1075, 1191
MfeI	CAATTG	3 cut(s)	396, 1071, 1323
MflI	RGATCY	2 cut(s)	775, 991
MhlI	GDGCHC	1 cut(s)	941
MlyI	GAGTC	3 cut(s)	34, 398, 1243
MmeI	TCCRAC	1 cut(s)	1537
MroXI	GAANNNNTTC	2 cut(s)	171, 517
MseI	TTAA	5 cut(s)	582, 944, 1358, 1676, 1692
MslI	CAYNNNNRTG	2 cut(s)	728, 926
MspI	CCGG	2 cut(s)	555, 840
MspR9I	CCNGG	4 cut(s)	487, 556, 601, 815
MunI	CAATTG	3 cut(s)	396, 1071, 1323
MvaI	CCWGG	3 cut(s)	487, 601, 815
MwoI	GCNNNNNNNGC	6 cut(s)	272, 479, 918, 1289, 1744, 1777
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	5 cut(s)	437, 775, 991, 1075, 1191
NlaIII	CATG	7 cut(s)	164, 755, 830, 1238, 1371, 1508, 1660
NlaIV	GGNNCC	2 cut(s)	777, 993
NmuCI	GTSAC	1 cut(s)	450
NspI	RCATGY	2 cut(s)	1371, 1660
OliI	CACNNNNGTG	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	1660
PdmI	GAANNNNTTC	2 cut(s)	171, 517
PfeI	GAWTC	6 cut(s)	81, 655, 755, 1013, 1312, 1634
PflFI	GACNNNGTC	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	7 cut(s)	10, 1381, 1409, 1528, 1552, 1662, 1770
PleI	GAGTC	3 cut(s)	34, 397, 1243
PpsI	GAGTC	3 cut(s)	34, 397, 1243
PshBI	ATTAAT	1 cut(s)	582
Psp6I	CCWGG	3 cut(s)	485, 599, 813
PspGI	CCWGG	3 cut(s)	485, 599, 813
PspN4I	GGNNCC	2 cut(s)	777, 993
PspPI	GGNCC	1 cut(s)	1470
PsuI	RGATCY	2 cut(s)	775, 991
PsyI	GACNNNGTC	1 cut(s)	330
RsaI	GTAC	2 cut(s)	667, 1493
RsaNI	GTAC	2 cut(s)	666, 1492
RseI	CAYNNNNRTG	2 cut(s)	728, 926
SaqAI	TTAA	5 cut(s)	582, 944, 1358, 1676, 1692
SatI	GCNGC	7 cut(s)	9, 1380, 1408, 1527, 1551, 1661, 1769
Sau3AI	GATC	5 cut(s)	437, 775, 991, 1075, 1191
Sau96I	GGNCC	1 cut(s)	1470
SchI	GAGTC	3 cut(s)	34, 398, 1243
ScrFI	CCNGG	4 cut(s)	487, 556, 601, 815
SduI	GDGCHC	1 cut(s)	941
SfaNI	GCATC	2 cut(s)	439, 1092
SinI	GGWCC	1 cut(s)	1470
SmiMI	CAYNNNNRTG	2 cut(s)	728, 926
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SphI	GCATGC	1 cut(s)	1660
SsiI	CCGC	1 cut(s)	1461
SspMI	CTAG	6 cut(s)	522, 794, 918, 1154, 1229, 1520
StyD4I	CCNGG	4 cut(s)	485, 554, 599, 813
StyI	CCWWGG	1 cut(s)	1437
TaaI	ACNGT	3 cut(s)	537, 718, 1731
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	4 cut(s)	88, 526, 1016, 1509
TatI	WGTACW	2 cut(s)	665, 1491
TfiI	GAWTC	6 cut(s)	81, 655, 755, 1013, 1312, 1634
Tru1I	TTAA	5 cut(s)	582, 944, 1358, 1676, 1692
Tru9I	TTAA	5 cut(s)	582, 944, 1358, 1676, 1692
TscAI	CASTG	2 cut(s)	547, 735
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	7 cut(s)	8, 1379, 1407, 1526, 1550, 1660, 1768
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	9 cut(s)	17, 164, 177, 603, 768, 1232, 1324, 1412, 1686
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	2 cut(s)	547, 735
Tth111I	GACNNNGTC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	1470
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	4 cut(s)	319, 379, 1361, 1560
XbaI	TCTAGA	1 cut(s)	1228
XceI	RCATGY	2 cut(s)	1371, 1660
XmiI	GTMKAC	1 cut(s)	810
XmnI	GAANNNNTTC	2 cut(s)	171, 517
XspI	CTAG	6 cut(s)	522, 794, 918, 1154, 1229, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.