MD15G1281000.v1.1

Leucine-zipper of ternary complex factor MIP1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
25111977 .. 25116250
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1281000.v1.1.491

Sequence Viewer

Length: 1875 bp
ATGAATAACAGAGTACGCATTAATTTTCAGACCATGAAAGCTGCTGCTGCTATAAATCATGATATTAATAAAATGGATTCTCAGAAGAGCAGAGCAATGGGCACTGAGAGAACTGCAATCAATCGGCGTAAATCGAACCGTGAAAGAAAAATGGCATTGCAGCAAGATGTTGATAAGCTGAAGAAGAAGCTCAGACATGAAGAGAATGTCCACAGAGCATTGGAGAGGGCTTTTACAAGACCATTGGGAGCTCTGCCTCGTCTTCCTCCTTATCTCCCTCCACATACATTAGAACTTCTAGCTGAAGTAGCTGTTTTAGAAGAGGAGGTTGTTCGGCTCGAAGAGCAGGTTGTGAATTTTAGACAAGGTCTCTATCAGCAAGCTGTGTATCTGTCCTCCAACAGGAGCGTCGAACTGTCCTCCAACAGGAGCGTCGAAACCTTGAATGATTCGATTGAACAGACCCCGGTTCGAGTCTCTAAACATCACAGGTCAAAATCTATGTCACATAATGAGTTCATGTCAGCCGCATCAGCCAGCAGGATTCCACCTTCGCTTGCTCGATGCACTTCGAGCAGAAGGATGATGTCCACTGATCATATCGTCTCTGATCGAATAGGGAATTGTTCTAGTAGGCAAGTCAATGGAAAACAAACTCCCAGGAAACCCAATTCCATAACACCAATTGCAGAAGATGGAAGAGGAAAAGAGAATCGGTTATGCTCGAATGCGGTGAAGGATAAGCAATCTCCTGACAAGAAAACTGCTAAAATTGTAACCCCAGTAAAGAAAACACCTACAAAACATGAATCCGGGGCAAAGTGTTCGGACGTGTTGAAGTTAGAGCTAGAATGCAGATTAGTAGACCAGGAAAGAGCACATGAGAGTTCATCTAGTTCTTCGGATGATAGGGTTCCGGATGCTGATATCACTCCTAATAAAGTGTCCGAGGATATTGTGAAGTGTTTGTCCAGCATTTTTGTGAGGATGAGCAGTTTGAAGGACAAGGGAGAGGAAGTGCAAAGTTCTAGATCAACATTATCTGCTCATGCAGCAAATGGAGAGATGGGATTTCAAGATCCTTATGGTATTTGTTTGGAATTCAGAAACATAGACGTTGGCCCCTATAAACATCTCCATTCAATTGATATTGGTTCAGTTGATATCAGCAGAACAACAAGCGCATTAATTCTGATGCACAGATTAAAGTTCCTACTTGGAAAGCTTGCTACTGTGAATCTAGAGGGTCTAAACCATCAGCAGAAGCTTGCATTTTGGATCAACACTTACAATTCCTGCATGATGAAGGCATTTTTAGAGCGTGGGATACCCGAGACTCCTGAAATGGTTGTAGGTCTAATGCAAAAGGCAACAATAGGTGTCGGGGGACACTCGCTAAATGCAATTACAATCGAGCATTTCATTTTAAGACTGCCGTATCACTTAAAATTTACATGTCCAAAAGCTGCGAAAAATGATGAGATGAAAGCTCGCAGCGTTTTCGGATTGGAGTGGTCGGAACCCTTGGTTACGTTTGCACTTTCGTGTGGAAGCTGGTCTTCCCCCACTGTGAGAGTGTACTCAGCAGCCCATGTGGAAGAAGAGTTGGAAGCAGCCAAAAGGGAGTACATACAGGCAGCAGTTGGCATTTCAAAGATAAACAAACTCATCATCCCCAAACTTTTGGATTGGTATTTACTTGATTTCGCAAAGGATTTGGAGTCATTGGTTGATTGGGTTTGCATGCAGCTGCCAAATGAACTGAGAAATGAGGTAGTTCAATGCCTTGAAAGGAGGGGAAGGGAGGAGCCCTTTTCACAGATGGTGCAAATAATGCCATACAATTTCAGCTTCAGGCTACTCTTACAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

625

Amino Acids

70.51

Weight (kDa)

9.21

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 46 - 127 1.7e-24 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 415 - 544 6.7e-39 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 864
AccIII TCCGGA 1 cut(s) 916
AciI CCGC 2 cut(s) 528, 731
AclWI GGATC 2 cut(s) 1073, 1286
AcsI RAATTY 3 cut(s) 355, 1100, 1448
AcuI CTGAAG 3 cut(s) 200, 324, 1837
AfaI GTAC 3 cut(s) 15, 1580, 1628
AfiI CCNNNNNNNGG 2 cut(s) 402, 426
AflIII ACRYGT 2 cut(s) 831, 1454
AgsI TTSAA 9 cut(s) 445, 458, 838, 1000, 1076, 1143, 1653, 1781, 1790
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 2 cut(s) 659, 867
AleI CACNNNNGTG 1 cut(s) 1543
Alw21I GWGCWC 2 cut(s) 253, 880
Alw26I GTCTC 4 cut(s) 374, 481, 610, 1328
AlwI GGATC 2 cut(s) 1073, 1286
Ama87I CYCGRG 1 cut(s) 1331
Aor13HI TCCGGA 1 cut(s) 916
AoxI GGCC 1 cut(s) 1120
ApoI RAATTY 3 cut(s) 355, 1100, 1448
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AseI ATTAAT 3 cut(s) 21, 66, 1187
AspLEI GCGC 1 cut(s) 1184
AspS9I GGNCC 1 cut(s) 1121
AsuC2I CCSGG 2 cut(s) 467, 814
AsuHPI GGTGA 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 1331
BaeGI GKGCMC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 1421, 1454
BanII GRGCYC 2 cut(s) 253, 1812
BbsI GAAGAC 2 cut(s) 254, 1551
Bbv12I GWGCWC 2 cut(s) 253, 880
BccI CCATC 4 cut(s) 689, 1060, 1263, 1816
BceAI ACGGC 1 cut(s) 1420
BcgI CGANNNNNNTGC 4 cut(s) 807, 841, 1483, 1517
BciT130I CCWGG 2 cut(s) 661, 869
BciVI GTATCC 1 cut(s) 1320
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 2 cut(s) 467, 814
BcoDI GTCTC 4 cut(s) 374, 481, 610, 1328
BfaI CTAG 6 cut(s) 299, 630, 848, 894, 1029, 1241
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 1 cut(s) 1320
Bme1390I CCNGG 4 cut(s) 467, 661, 814, 869
BmeT110I CYCGRG 1 cut(s) 1331
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 1 cut(s) 1121
BmiI GGNNCC 4 cut(s) 915, 1123, 1521, 1809
BmrFI CCNGG 4 cut(s) 467, 661, 814, 869
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 4 cut(s) 539, 554, 910, 1185
BmuI ACTGGG 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 254, 1551
BpuMI CCSGG 2 cut(s) 467, 814
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 5 cut(s) 465, 659, 813, 948, 1524
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 426
Bse1I ACTGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 102, 155
BseAI TCCGGA 1 cut(s) 916
BseBI CCWGG 2 cut(s) 661, 869
BseDI CCNNGG 5 cut(s) 465, 659, 813, 948, 1524
BseGI GGATG 5 cut(s) 588, 910, 925, 993, 1671
BseLI CCNNNNNNNGG 2 cut(s) 402, 426
BseMI GCAATG 2 cut(s) 102, 155
BseMII CTCAG 5 cut(s) 95, 96, 205, 1596, 1754
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 2 cut(s) 338, 1820
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 1 cut(s) 1122
BsiHKAI GWGCWC 2 cut(s) 253, 880
BsiHKCI CYCGRG 1 cut(s) 1331
BsiSI CCGG 3 cut(s) 467, 813, 917
BslFI GGGAC 1 cut(s) 1401
BslI CCNNNNNNNGG 2 cut(s) 402, 426
BsmAI GTCTC 4 cut(s) 374, 481, 610, 1328
BsmBI CGTCTC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 1401
BsmI GAATGC 2 cut(s) 733, 857
BsnI GGCC 1 cut(s) 1122
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 1331
Bsp1286I GDGCHC 4 cut(s) 104, 253, 880, 1812
Bsp13I TCCGGA 1 cut(s) 916
Bsp143I GATC 5 cut(s) 595, 610, 1031, 1078, 1278
BspACI CCGC 2 cut(s) 528, 731
BspANI GGCC 1 cut(s) 1122
BspCNI CTCAG 5 cut(s) 94, 97, 204, 1595, 1755
BspEI TCCGGA 1 cut(s) 916
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 915, 1123, 1521, 1809
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 2 cut(s) 1073, 1286
BspQI GCTCTTC 2 cut(s) 80, 336
BspTNI GGTCTC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 102, 155
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 5 cut(s) 465, 659, 813, 948, 1524
BssMI GATC 5 cut(s) 595, 610, 1031, 1078, 1278
BssT1I CCWWGG 1 cut(s) 1524
Bst2UI CCWGG 2 cut(s) 661, 869
Bst4CI ACNGT 4 cut(s) 140, 417, 1234, 1570
Bst6I CTCTTC 6 cut(s) 80, 195, 315, 336, 694, 1596
BstAPI GCANNNNNTGC 1 cut(s) 1834
BstC8I GCNNGC 7 cut(s) 381, 538, 558, 1227, 1269, 1492, 1745
BstDEI CTNAG 5 cut(s) 81, 105, 191, 1582, 1763
BstENI CCTNNNNNAGG 2 cut(s) 400, 424
BstF5I GGATG 5 cut(s) 588, 910, 925, 993, 1671
BstHHI GCGC 1 cut(s) 1184
BstKTI GATC 5 cut(s) 598, 613, 1034, 1081, 1281
BstMAI GTCTC 4 cut(s) 374, 481, 610, 1328
BstMBI GATC 5 cut(s) 595, 610, 1031, 1078, 1278
BstMWI GCNNNNNNNGC 7 cut(s) 47, 308, 343, 533, 573, 1052, 1834
BstNI CCWGG 2 cut(s) 661, 869
BstNSI RCATGY 2 cut(s) 1458, 1747
BstSCI CCNGG 4 cut(s) 465, 659, 812, 867
BstSLI GKGCMC 1 cut(s) 104
BstV2I GAAGAC 2 cut(s) 254, 1551
BstX2I RGATCY 1 cut(s) 1078
BstXI CCANNNNNNTGG 1 cut(s) 1684
BstYI RGATCY 1 cut(s) 1078
BsuI GTATCC 1 cut(s) 1320
BsuRI GGCC 1 cut(s) 1122
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 5 cut(s) 588, 910, 925, 993, 1671
BtsIMutI CAGTG 3 cut(s) 102, 591, 1566
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 7 cut(s) 381, 538, 558, 1227, 1269, 1492, 1745
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 1184
Cfr13I GGNCC 1 cut(s) 1121
CseI GACGC 2 cut(s) 397, 421
Csp6I GTAC 3 cut(s) 14, 1579, 1627
CviQI GTAC 3 cut(s) 14, 1579, 1627
DdeI CTNAG 5 cut(s) 81, 105, 191, 1582, 1763
DpnI GATC 5 cut(s) 597, 612, 1033, 1080, 1280
DpnII GATC 5 cut(s) 595, 610, 1031, 1078, 1278
Eam1104I CTCTTC 6 cut(s) 80, 195, 315, 336, 694, 1596
EarI CTCTTC 6 cut(s) 80, 195, 315, 336, 694, 1596
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 1524
Eco24I GRGCYC 2 cut(s) 253, 1812
Eco31I GGTCTC 1 cut(s) 374
Eco32I GATATC 2 cut(s) 928, 1165
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 3 cut(s) 200, 324, 1837
Eco88I CYCGRG 1 cut(s) 1331
EcoICRI GAGCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 2 cut(s) 400, 424
EcoRI GAATTC 1 cut(s) 1100
EcoRII CCWGG 2 cut(s) 659, 867
EcoRV GATATC 2 cut(s) 928, 1165
EcoT14I CCWWGG 1 cut(s) 1524
EcoT38I GRGCYC 2 cut(s) 253, 1812
ErhI CCWWGG 1 cut(s) 1524
Esp3I CGTCTC 1 cut(s) 610
FalI AAGNNNNNCTT 2 cut(s) 1543, 1575
FaqI GGGAC 1 cut(s) 1401
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 864
FokI GGATG 5 cut(s) 595, 917, 932, 1000, 1658
FriOI GRGCYC 2 cut(s) 253, 1812
FspBI CTAG 6 cut(s) 299, 630, 848, 894, 1029, 1241
GlaI GCGC 1 cut(s) 1183
HaeIII GGCC 1 cut(s) 1122
HapII CCGG 3 cut(s) 467, 813, 917
HgaI GACGC 2 cut(s) 397, 421
HhaI GCGC 1 cut(s) 1184
Hin6I GCGC 1 cut(s) 1182
HinP1I GCGC 1 cut(s) 1182
HindIII AAGCTT 2 cut(s) 1223, 1265
HinfI GANTC 9 cut(s) 77, 449, 474, 544, 712, 809, 1237, 1336, 1721
HpaII CCGG 3 cut(s) 467, 813, 917
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 4 cut(s) 211, 591, 865, 1579
Hpy188III TCNNGA 7 cut(s) 59, 752, 917, 1029, 1076, 1241, 1340
Hpy8I GTNNAC 4 cut(s) 211, 591, 865, 1579
Hpy99I CGWCG 2 cut(s) 413, 437
HpyAV CCTTC 6 cut(s) 561, 573, 730, 994, 1300, 1794
HpyCH4III ACNGT 4 cut(s) 140, 417, 1234, 1570
HpyCH4IV ACGT 3 cut(s) 831, 1116, 1532
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 308, 343, 533, 573, 1052, 1834
HpyF3I CTNAG 5 cut(s) 81, 105, 191, 1582, 1763
HpySE526I ACGT 3 cut(s) 831, 1116, 1532
HspAI GCGC 1 cut(s) 1182
Kpn2I TCCGGA 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 5 cut(s) 595, 610, 1031, 1078, 1278
LguI GCTCTTC 2 cut(s) 80, 336
LmnI GCTCC 4 cut(s) 248, 405, 429, 1807
LweI GCATC 4 cut(s) 539, 554, 910, 1185
MaeI CTAG 6 cut(s) 299, 630, 848, 894, 1029, 1241
MaeII ACGT 3 cut(s) 831, 1116, 1532
MaeIII GTNAC 3 cut(s) 504, 775, 1528
MalI GATC 5 cut(s) 597, 612, 1033, 1080, 1280
MboI GATC 5 cut(s) 595, 610, 1031, 1078, 1278
MfeI CAATTG 2 cut(s) 684, 1143
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 4 cut(s) 104, 253, 880, 1812
MlyI GAGTC 3 cut(s) 483, 1330, 1730
MmeI TCCRAC 4 cut(s) 423, 447, 1497, 1587
MroI TCCGGA 1 cut(s) 916
MseI TTAA 6 cut(s) 21, 66, 1187, 1205, 1427, 1445
MslI CAYNNNNRTG 2 cut(s) 980, 1543
MspA1I CMGCKG 1 cut(s) 1750
MspI CCGG 3 cut(s) 467, 813, 917
MspR9I CCNGG 4 cut(s) 467, 661, 814, 869
MunI CAATTG 2 cut(s) 684, 1143
Mva1269I GAATGC 2 cut(s) 733, 857
MvaI CCWGG 2 cut(s) 661, 869
MwoI GCNNNNNNNGC 7 cut(s) 47, 308, 343, 533, 573, 1052, 1834
NciI CCSGG 2 cut(s) 467, 814
NdeII GATC 5 cut(s) 595, 610, 1031, 1078, 1278
NlaIV GGNNCC 4 cut(s) 915, 1123, 1521, 1809
NmuCI GTSAC 1 cut(s) 504
NspI RCATGY 2 cut(s) 1458, 1747
OliI CACNNNNGTG 1 cut(s) 1543
PaeI GCATGC 1 cut(s) 1747
PagI TCATGA 1 cut(s) 58
PciI ACATGT 1 cut(s) 1454
PciSI GCTCTTC 2 cut(s) 80, 336
PctI GAATGC 2 cut(s) 733, 857
PfeI GAWTC 6 cut(s) 77, 449, 544, 712, 809, 1237
PflFI GACNNNGTC 1 cut(s) 366
PleI GAGTC 3 cut(s) 482, 1330, 1729
PpsI GAGTC 3 cut(s) 482, 1330, 1729
PscI ACATGT 1 cut(s) 1454
PshBI ATTAAT 3 cut(s) 21, 66, 1187
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 659, 867
PspGI CCWGG 2 cut(s) 659, 867
PspN4I GGNNCC 4 cut(s) 915, 1123, 1521, 1809
PspPI GGNCC 1 cut(s) 1121
PsuI RGATCY 1 cut(s) 1078
PsyI GACNNNGTC 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 1750
RsaI GTAC 3 cut(s) 15, 1580, 1628
RsaNI GTAC 3 cut(s) 14, 1579, 1627
RseI CAYNNNNRTG 2 cut(s) 980, 1543
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 2 cut(s) 80, 336
SaqAI TTAA 6 cut(s) 21, 66, 1187, 1205, 1427, 1445
Sau3AI GATC 5 cut(s) 595, 610, 1031, 1078, 1278
Sau96I GGNCC 1 cut(s) 1121
SchI GAGTC 3 cut(s) 483, 1330, 1730
ScrFI CCNGG 4 cut(s) 467, 661, 814, 869
SduI GDGCHC 4 cut(s) 104, 253, 880, 1812
SfaNI GCATC 4 cut(s) 539, 554, 910, 1185
SmiMI CAYNNNNRTG 2 cut(s) 980, 1543
SphI GCATGC 1 cut(s) 1747
SsiI CCGC 2 cut(s) 528, 731
SspMI CTAG 6 cut(s) 299, 630, 848, 894, 1029, 1241
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 4 cut(s) 465, 659, 812, 867
StyI CCWWGG 1 cut(s) 1524
TaaI ACNGT 4 cut(s) 140, 417, 1234, 1570
TaiI ACGT 3 cut(s) 834, 1119, 1535
TatI WGTACW 2 cut(s) 1578, 1626
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 6 cut(s) 77, 449, 544, 712, 809, 1237
Tru1I TTAA 6 cut(s) 21, 66, 1187, 1205, 1427, 1445
Tru9I TTAA 6 cut(s) 21, 66, 1187, 1205, 1427, 1445
TscAI CASTG 3 cut(s) 109, 598, 1573
TseFI GTSAC 1 cut(s) 504
Tsp45I GTSAC 1 cut(s) 504
TspRI CASTG 3 cut(s) 109, 598, 1573
Tth111I GACNNNGTC 1 cut(s) 366
VspI ATTAAT 3 cut(s) 21, 66, 1187
XagI CCTNNNNNAGG 2 cut(s) 400, 424
XapI RAATTY 3 cut(s) 355, 1100, 1448
XbaI TCTAGA 2 cut(s) 1028, 1240
XceI RCATGY 2 cut(s) 1458, 1747
XmiI GTMKAC 1 cut(s) 864
XspI CTAG 6 cut(s) 299, 630, 848, 894, 1029, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.