Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007088

Physical Location & Seq

Genomic Coordinates Forward (+)

10776622 .. 10779455

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCAGTGGAAAGGTGATGACTTTGCAGGTGGTTCAGCTCCTTCTTCGTCCCAGCCTCTTGCTTGTGATTCCAGGAAAAGGGCTGATTTAGAAACCAAGGACCCTGTTTCTGCGAGAAAAGTACAGAAAGCTGACCGTGAAAAATTGAGGAGGGATCGGCTGAATGAGCATTTTCTTGATTTGGGAAACACATTAGACCCAGATAGGCCAAAGAACGACAAGGCCACTATCCTTACAGACACAATTCAAATGTTGAAGGATTTAACGTCGGATGTGAACAAACTGAAGGCTGAGTGTGCAGCACTCAATGGTGAATCCCGTGAGCTGACAGTGGAGAAGAATGAGCTAAGAGAAGAGAAGGTATCTTTAAAATCTGATATTGAGAATCTCAATGCTCAATATCAGCAAAGAGTGAGGGTTATGTTTCCATGGGGGGCTATGGATCCTTCTGTTGTTATGGCGCCACCTTATTCATATCCAATGCCTGTAGCTGTTCCGCCCGGTCCAATTCCTATGCACCCATCGCTTCAGCCCTTTCCTTACTATCAAACTCAAAATCCAGCCACTATTCCCAATTCTTGTCCAACTTTTGTATCATATCCAACTCCTATCAATCGACCAGTAGAACAGCCGTTACCCCAACCCCAATATGCATCCGTTTCACATGTTTCAAGTAAGCAAGATTCCAAAAGCAAGTCATCAGATCATCAAAGGGGAAGCAATGCTGAAAGATGTGATGGCTCCAATGATGTGGCAACAGAGCTTGTACTTAAGATGCCTGGATCTTCAGCACATCAGGAGTCATCTTGTGGGGCTAGGAAGGGGAAGCAATCACGAACAAAAGATAGGAACATTACAGATGGAAGCTCTTCGAGTAGGTATTCTTCATCTCAAGTTGTTCAGGAGAATTCGTCTAACAGTGTAGGTGATATCCCCAAGACTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM131_like

Protein Analysis

317

Amino Acids

34.99

Weight (kDa)

8.17

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	39 - 114	3e-19	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	40 - 90	5.8e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37080 AT4G37080 AT4G37080
fragaria_vesca	FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700
malus_domestica	MD02G1169000.v1.1 MD15G1281000.v1.1
prunus_persica	Prupe.7G136300_v2.0.a1
pyrus_communis	pycom02g13570 pycom15g24450
rosa_chinensis	RchiOBHm_Chr2g0105011
rosa_laevigata	RLG00000017389
rosa_multiflora	Rmu_sc0000641.1_g000026
rosa_roxburghii	Rroxscaffold_2G00138580
rosa_rugosa	Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1
rosa_samantha	Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800
rosa_wichuraiana	Rw2G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	5 cut(s)	12, 165, 440, 453, 793
AcsI	RAATTY	1 cut(s)	910
AcuI	CTGAAG	3 cut(s)	308, 515, 774
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	126, 771
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	251, 259, 675
AjnI	CCWGG	2 cut(s)	74, 781
AluBI	AGCT	7 cut(s)	41, 134, 328, 349, 494, 766, 870
AluI	AGCT	7 cut(s)	41, 134, 328, 349, 494, 766, 870
AlwI	GGATC	5 cut(s)	12, 165, 440, 453, 793
AoxI	GGCC	2 cut(s)	209, 225
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	910
Asp700I	GAANNNNTTC	1 cut(s)	871
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	103, 506
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	29, 326, 941
AvaII	GGWCC	2 cut(s)	103, 506
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	3 cut(s)	532, 734, 857
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	2 cut(s)	76, 783
BcnI	CCSGG	1 cut(s)	504
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	467
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	76, 504, 783
Bme18I	GGWCC	2 cut(s)	103, 506
BmgT120I	GGNCC	2 cut(s)	103, 506
BmiI	GGNNCC	4 cut(s)	105, 447, 465, 745
BmrFI	CCNGG	3 cut(s)	76, 504, 783
BmsI	GCATC	2 cut(s)	665, 768
BpuEI	CTTGAG	1 cut(s)	879
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	99, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	899, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	730
BseBI	CCWGG	2 cut(s)	76, 783
BseDI	CCNNGG	2 cut(s)	99, 431
BseGI	GGATG	2 cut(s)	280, 656
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	211, 227
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	211, 227
Bsp143I	GATC	5 cut(s)	4, 157, 445, 706, 785
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	211, 227
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	105, 447, 465, 745
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	5 cut(s)	12, 165, 440, 453, 793
BspQI	GCTCTTC	1 cut(s)	877
BspT107I	GGYRCC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	99, 431
BssMI	GATC	5 cut(s)	4, 157, 445, 706, 785
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	99, 431
Bst2UI	CCWGG	2 cut(s)	76, 783
Bst4CI	ACNGT	3 cut(s)	140, 334, 923
Bst6I	CTCTTC	2 cut(s)	351, 877
BstACI	GRCGYC	1 cut(s)	464
BstAFI	CTTAAG	1 cut(s)	773
BstDEI	CTNAG	2 cut(s)	294, 350
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	280, 656
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	5 cut(s)	7, 160, 448, 709, 788
BstMBI	GATC	5 cut(s)	4, 157, 445, 706, 785
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 299, 526
BstNI	CCWGG	2 cut(s)	76, 783
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	74, 502, 781
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	445, 785
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstYI	RGATCY	2 cut(s)	445, 785
BsuRI	GGCC	2 cut(s)	211, 227
BtgI	CCRYGG	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	280, 656
BtsIMutI	CAGTG	3 cut(s)	14, 339, 928
BveI	ACCTGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	103, 506
Csp6I	GTAC	2 cut(s)	125, 770
CviAII	CATG	2 cut(s)	432, 668
CviQI	GTAC	2 cut(s)	125, 770
DdeI	CTNAG	2 cut(s)	294, 350
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	5 cut(s)	6, 159, 447, 708, 787
DpnII	GATC	5 cut(s)	4, 157, 445, 706, 785
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	351, 877
EarI	CTCTTC	2 cut(s)	351, 877
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	99, 431
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	2 cut(s)	103, 506
Eco57I	CTGAAG	3 cut(s)	308, 515, 774
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	74, 781
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	2 cut(s)	99, 431
EcoT22I	ATGCAT	1 cut(s)	658
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	99, 431
FaeI	CATG	2 cut(s)	435, 671
FaiI	YATR	9 cut(s)	425, 433, 443, 461, 478, 518, 601, 654, 669
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	431, 667
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	287, 643
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	211, 227
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	435, 671
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	5 cut(s)	71, 317, 388, 686, 803
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	3 cut(s)	29, 326, 941
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	274, 379, 706
Hpy188III	TCNNGA	4 cut(s)	179, 800, 837, 905
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	6 cut(s)	54, 253, 283, 355, 459, 817
HpyCH4III	ACNGT	3 cut(s)	140, 334, 923
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	29, 302, 520, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 299, 526
HpyF3I	CTNAG	2 cut(s)	294, 350
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	2 cut(s)	435, 671
HspAI	GCGC	1 cut(s)	464
KasI	GGCGCC	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	4, 157, 445, 706, 785
LguI	GCTCTTC	1 cut(s)	877
LmnI	GCTCC	2 cut(s)	46, 749
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	665, 768
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	5 cut(s)	6, 159, 447, 708, 787
MboI	GATC	5 cut(s)	4, 157, 445, 706, 785
MboII	GAAGA	6 cut(s)	39, 352, 368, 780, 864, 879
MflI	RGATCY	2 cut(s)	445, 785
MluCI	AATT	5 cut(s)	146, 246, 510, 577, 910
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	3 cut(s)	252, 611, 629
MnlI	CCTC	4 cut(s)	69, 144, 147, 411
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	3 cut(s)	266, 371, 774
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	76, 504, 783
MvaI	CCWGG	2 cut(s)	76, 783
MwoI	GCNNNNNNNGC	3 cut(s)	169, 299, 526
NarI	GGCGCC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	5 cut(s)	4, 157, 445, 706, 785
NlaIII	CATG	2 cut(s)	435, 671
NlaIV	GGNNCC	4 cut(s)	105, 447, 465, 745
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	20
PciI	ACATGT	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	877
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	71, 317, 388, 686
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	811
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	811
PpuMI	RGGWCCY	1 cut(s)	103
PscI	ACATGT	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	74, 781
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	74, 781
PspN4I	GGNNCC	4 cut(s)	105, 447, 465, 745
PspPI	GGNCC	2 cut(s)	103, 506
PspPPI	RGGWCCY	1 cut(s)	103
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PsuI	RGATCY	2 cut(s)	445, 785
RsaI	GTAC	2 cut(s)	126, 771
RsaNI	GTAC	2 cut(s)	125, 770
SapI	GCTCTTC	1 cut(s)	877
SaqAI	TTAA	3 cut(s)	266, 371, 774
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	5 cut(s)	4, 157, 445, 706, 785
Sau96I	GGNCC	2 cut(s)	103, 506
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	76, 504, 783
SfaNI	GCATC	2 cut(s)	665, 768
SfcI	CTRYAG	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	465
SinI	GGWCC	2 cut(s)	103, 506
SmlI	CTYRAG	2 cut(s)	773, 894
SmoI	CTYRAG	2 cut(s)	773, 894
Sse9I	AATT	5 cut(s)	146, 246, 510, 577, 910
SsiI	CCGC	1 cut(s)	500
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	74, 502, 781
StyI	CCWWGG	2 cut(s)	99, 431
TaaI	ACNGT	3 cut(s)	140, 334, 923
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	619, 875
TasI	AATT	5 cut(s)	146, 246, 510, 577, 910
TatI	WGTACW	2 cut(s)	124, 769
TfiI	GAWTC	4 cut(s)	71, 317, 388, 686
Tru1I	TTAA	3 cut(s)	266, 371, 774
Tru9I	TTAA	3 cut(s)	266, 371, 774
TscAI	CASTG	3 cut(s)	14, 339, 928
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	465, 879
TspGWI	ACGGA	1 cut(s)	649
TspRI	CASTG	3 cut(s)	14, 339, 928
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	2 cut(s)	103, 506
XapI	RAATTY	1 cut(s)	910
XceI	RCATGY	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.