Leucine-zipper of ternary complex factor MIP1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37080 AT4G37080 AT4G37080 |
| fragaria_vesca | FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 FvH4_1g15700 |
| malus_domestica | MD02G1169000.v1.1 MD15G1281000.v1.1 |
| prunus_persica | Prupe.7G136300_v2.0.a1 |
| pyrus_communis | pycom02g13570 pycom15g24450 |
| rosa_chinensis | RchiOBHm_Chr2g0105011 |
| rosa_laevigata | RLG00000017389 |
| rosa_multiflora | Rmu_sc0000641.1_g000026 |
| rosa_roxburghii | Rroxscaffold_2G00138580 |
| rosa_rugosa | Rorug02G0124900 Rorug02G0125000 Rorug02G0125100.1 |
| rosa_samantha | Rh2AG175400 Rh2BG183500 Rh2CG180100 Rh2DG181800 |
| rosa_wichuraiana | Rw2G013790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1383 |
| Acc36I | ACCTGC | 1 cut(s) | 454 |
| AccI | GTMKAC | 1 cut(s) | 957 |
| AccIII | TCCGGA | 1 cut(s) | 1009 |
| AciI | CCGC | 2 cut(s) | 621, 824 |
| AclWI | GGATC | 4 cut(s) | 1001, 1014, 1166, 1379 |
| AcsI | RAATTY | 4 cut(s) | 70, 472, 1193, 1541 |
| AcuI | CTGAAG | 3 cut(s) | 317, 441, 1930 |
| AfaI | GTAC | 2 cut(s) | 129, 1673 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 519 |
| AflIII | ACRYGT | 2 cut(s) | 924, 1547 |
| AgsI | TTSAA | 6 cut(s) | 931, 1093, 1169, 1746, 1874, 1883 |
| AjiI | CACGTC | 1 cut(s) | 925 |
| AjnI | CCWGG | 2 cut(s) | 752, 960 |
| AleI | CACNNNNGTG | 1 cut(s) | 1636 |
| Alw21I | GWGCWC | 2 cut(s) | 370, 973 |
| Alw26I | GTCTC | 4 cut(s) | 491, 574, 703, 1421 |
| AlwI | GGATC | 4 cut(s) | 1001, 1014, 1166, 1379 |
| Ama87I | CYCGRG | 1 cut(s) | 1424 |
| Aor13HI | TCCGGA | 1 cut(s) | 1009 |
| AoxI | GGCC | 1 cut(s) | 1213 |
| ApoI | RAATTY | 4 cut(s) | 70, 472, 1193, 1541 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 581, 613 |
| AseI | ATTAAT | 1 cut(s) | 1280 |
| AspLEI | GCGC | 1 cut(s) | 662 |
| AspS9I | GGNCC | 3 cut(s) | 1214, 1608, 1650 |
| AsuC2I | CCSGG | 1 cut(s) | 560 |
| AsuHPI | GGTGA | 1 cut(s) | 838 |
| AsuII | TTCGAA | 1 cut(s) | 536 |
| AvaI | CYCGRG | 1 cut(s) | 1424 |
| AvaII | GGWCC | 2 cut(s) | 1608, 1650 |
| BaeGI | GKGCMC | 1 cut(s) | 221 |
| BamHI | GGATCC | 1 cut(s) | 1006 |
| BanII | GRGCYC | 2 cut(s) | 370, 1905 |
| BbsI | GAAGAC | 1 cut(s) | 371 |
| Bbv12I | GWGCWC | 2 cut(s) | 370, 973 |
| BccI | CCATC | 5 cut(s) | 184, 782, 1153, 1356, 1909 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 900, 934, 1576, 1610 |
| BciT130I | CCWGG | 2 cut(s) | 754, 962 |
| BciVI | GTATCC | 1 cut(s) | 1413 |
| BclI | TGATCA | 1 cut(s) | 1761 |
| BcnI | CCSGG | 1 cut(s) | 560 |
| BcoDI | GTCTC | 4 cut(s) | 491, 574, 703, 1421 |
| BfaI | CTAG | 4 cut(s) | 416, 941, 987, 1122 |
| BfuAI | ACCTGC | 1 cut(s) | 454 |
| BfuI | GTATCC | 1 cut(s) | 1413 |
| Bme1390I | CCNGG | 3 cut(s) | 560, 754, 962 |
| Bme18I | GGWCC | 2 cut(s) | 1608, 1650 |
| BmeT110I | CYCGRG | 1 cut(s) | 1424 |
| BmgBI | CACGTC | 1 cut(s) | 925 |
| BmgT120I | GGNCC | 3 cut(s) | 1214, 1608, 1650 |
| BmiI | GGNNCC | 3 cut(s) | 1008, 1216, 1902 |
| BmrFI | CCNGG | 3 cut(s) | 560, 754, 962 |
| BmrI | ACTGGG | 1 cut(s) | 869 |
| BmsI | GCATC | 6 cut(s) | 52, 85, 632, 647, 1003, 1278 |
| BmuI | ACTGGG | 1 cut(s) | 869 |
| BpiI | GAAGAC | 1 cut(s) | 371 |
| BpmI | CTGGAG | 2 cut(s) | 81, 1355 |
| Bpu14I | TTCGAA | 1 cut(s) | 536 |
| BpuMI | CCSGG | 1 cut(s) | 560 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1005, 1241 |
| BsaI | GGTCTC | 1 cut(s) | 491 |
| BsaJI | CCNNGG | 5 cut(s) | 558, 752, 906, 1041, 1617 |
| BsaWI | WCCGGW | 1 cut(s) | 1009 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1095, 1125 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 519 |
| Bse1I | ACTGG | 1 cut(s) | 875 |
| Bse3DI | GCAATG | 2 cut(s) | 219, 272 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1005, 1241 |
| BseAI | TCCGGA | 1 cut(s) | 1009 |
| BseBI | CCWGG | 2 cut(s) | 754, 962 |
| BseDI | CCNNGG | 5 cut(s) | 558, 752, 906, 1041, 1617 |
| BseGI | GGATG | 7 cut(s) | 38, 67, 681, 1003, 1018, 1086, 1764 |
| BseJI | GATNNNNATC | 2 cut(s) | 1005, 1241 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 519 |
| BseMI | GCAATG | 2 cut(s) | 219, 272 |
| BseMII | CTCAG | 5 cut(s) | 212, 213, 322, 1689, 1847 |
| BseNI | ACTGG | 1 cut(s) | 875 |
| BseRI | GAGGAG | 2 cut(s) | 455, 1913 |
| BseSI | GKGCMC | 1 cut(s) | 221 |
| BshFI | GGCC | 1 cut(s) | 1215 |
| BsiHKAI | GWGCWC | 2 cut(s) | 370, 973 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1424 |
| BsiSI | CCGG | 2 cut(s) | 560, 1010 |
| BslFI | GGGAC | 1 cut(s) | 1494 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 519 |
| BsmAI | GTCTC | 4 cut(s) | 491, 574, 703, 1421 |
| BsmBI | CGTCTC | 1 cut(s) | 703 |
| BsmFI | GGGAC | 1 cut(s) | 1494 |
| BsmI | GAATGC | 1 cut(s) | 950 |
| BsnI | GGCC | 1 cut(s) | 1215 |
| Bso31I | GGTCTC | 1 cut(s) | 491 |
| BsoBI | CYCGRG | 1 cut(s) | 1424 |
| Bsp119I | TTCGAA | 1 cut(s) | 536 |
| Bsp1286I | GDGCHC | 4 cut(s) | 221, 370, 973, 1905 |
| Bsp13I | TCCGGA | 1 cut(s) | 1009 |
| Bsp143I | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| BspACI | CCGC | 2 cut(s) | 621, 824 |
| BspANI | GGCC | 1 cut(s) | 1215 |
| BspCNI | CTCAG | 5 cut(s) | 211, 214, 321, 1688, 1848 |
| BspEI | TCCGGA | 1 cut(s) | 1009 |
| BspHI | TCATGA | 1 cut(s) | 172 |
| BspLI | GGNNCC | 3 cut(s) | 1008, 1216, 1902 |
| BspMI | ACCTGC | 1 cut(s) | 454 |
| BspPI | GGATC | 4 cut(s) | 1001, 1014, 1166, 1379 |
| BspQI | GCTCTTC | 2 cut(s) | 197, 453 |
| BspT104I | TTCGAA | 1 cut(s) | 536 |
| BspTNI | GGTCTC | 1 cut(s) | 491 |
| BsrDI | GCAATG | 2 cut(s) | 219, 272 |
| BsrI | ACTGG | 1 cut(s) | 875 |
| BssECI | CCNNGG | 5 cut(s) | 558, 752, 906, 1041, 1617 |
| BssMI | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| BssT1I | CCWWGG | 1 cut(s) | 1617 |
| Bst2UI | CCWGG | 2 cut(s) | 754, 962 |
| Bst4CI | ACNGT | 3 cut(s) | 257, 1327, 1663 |
| Bst6I | CTCTTC | 5 cut(s) | 197, 312, 432, 453, 1689 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1927 |
| BstBI | TTCGAA | 1 cut(s) | 536 |
| BstC8I | GCNNGC | 7 cut(s) | 498, 631, 651, 1320, 1362, 1585, 1838 |
| BstDEI | CTNAG | 5 cut(s) | 198, 222, 308, 1675, 1856 |
| BstDSI | CCRYGG | 1 cut(s) | 906 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 517 |
| BstF5I | GGATG | 7 cut(s) | 38, 67, 681, 1003, 1018, 1086, 1764 |
| BstHHI | GCGC | 1 cut(s) | 662 |
| BstKTI | GATC | 7 cut(s) | 706, 1009, 1127, 1174, 1258, 1374, 1764 |
| BstMAI | GTCTC | 4 cut(s) | 491, 574, 703, 1421 |
| BstMBI | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 10, 161, 425, 460, 626, 659, 1145, 1927, 1960 |
| BstNI | CCWGG | 2 cut(s) | 754, 962 |
| BstNSI | RCATGY | 2 cut(s) | 1551, 1840 |
| BstSCI | CCNGG | 3 cut(s) | 558, 752, 960 |
| BstSLI | GKGCMC | 1 cut(s) | 221 |
| BstV2I | GAAGAC | 1 cut(s) | 371 |
| BstX2I | RGATCY | 2 cut(s) | 1006, 1171 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1777 |
| BstYI | RGATCY | 2 cut(s) | 1006, 1171 |
| BsuI | GTATCC | 1 cut(s) | 1413 |
| BsuRI | GGCC | 1 cut(s) | 1215 |
| BtgI | CCRYGG | 1 cut(s) | 906 |
| BtrI | CACGTC | 1 cut(s) | 925 |
| BtsCI | GGATG | 7 cut(s) | 38, 67, 681, 1003, 1018, 1086, 1764 |
| BtsIMutI | CAGTG | 3 cut(s) | 219, 1323, 1659 |
| BveI | ACCTGC | 1 cut(s) | 454 |
| Cac8I | GCNNGC | 7 cut(s) | 498, 631, 651, 1320, 1362, 1585, 1838 |
| CciI | TCATGA | 1 cut(s) | 172 |
| CfoI | GCGC | 1 cut(s) | 662 |
| Cfr13I | GGNCC | 3 cut(s) | 1214, 1608, 1650 |
| Csp6I | GTAC | 2 cut(s) | 128, 1672 |
| CviQI | GTAC | 2 cut(s) | 128, 1672 |
| DdeI | CTNAG | 5 cut(s) | 198, 222, 308, 1675, 1856 |
| DpnI | GATC | 7 cut(s) | 705, 1008, 1126, 1173, 1257, 1373, 1763 |
| DpnII | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| Eam1104I | CTCTTC | 5 cut(s) | 197, 312, 432, 453, 1689 |
| EarI | CTCTTC | 5 cut(s) | 197, 312, 432, 453, 1689 |
| Ecl136II | GAGCTC | 1 cut(s) | 368 |
| Eco130I | CCWWGG | 1 cut(s) | 1617 |
| Eco24I | GRGCYC | 2 cut(s) | 370, 1905 |
| Eco31I | GGTCTC | 1 cut(s) | 491 |
| Eco32I | GATATC | 1 cut(s) | 1243 |
| Eco47I | GGWCC | 2 cut(s) | 1608, 1650 |
| Eco53kI | GAGCTC | 1 cut(s) | 368 |
| Eco57I | CTGAAG | 3 cut(s) | 317, 441, 1930 |
| Eco88I | CYCGRG | 1 cut(s) | 1424 |
| EcoICRI | GAGCTC | 1 cut(s) | 368 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 517 |
| EcoRI | GAATTC | 1 cut(s) | 1193 |
| EcoRII | CCWGG | 2 cut(s) | 752, 960 |
| EcoRV | GATATC | 1 cut(s) | 1243 |
| EcoT14I | CCWWGG | 1 cut(s) | 1617 |
| EcoT22I | ATGCAT | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 2 cut(s) | 370, 1905 |
| ErhI | CCWWGG | 1 cut(s) | 1617 |
| Esp3I | CGTCTC | 1 cut(s) | 703 |
| FaqI | GGGAC | 1 cut(s) | 1494 |
| FbaI | TGATCA | 1 cut(s) | 1761 |
| FblI | GTMKAC | 1 cut(s) | 957 |
| FokI | GGATG | 7 cut(s) | 25, 74, 688, 1010, 1025, 1093, 1751 |
| FriOI | GRGCYC | 2 cut(s) | 370, 1905 |
| FspBI | CTAG | 4 cut(s) | 416, 941, 987, 1122 |
| GlaI | GCGC | 1 cut(s) | 661 |
| GsuI | CTGGAG | 2 cut(s) | 81, 1355 |
| HaeIII | GGCC | 1 cut(s) | 1215 |
| HapII | CCGG | 2 cut(s) | 560, 1010 |
| HhaI | GCGC | 1 cut(s) | 662 |
| Hin6I | GCGC | 1 cut(s) | 660 |
| HinP1I | GCGC | 1 cut(s) | 660 |
| HindIII | AAGCTT | 2 cut(s) | 1316, 1358 |
| HinfI | GANTC | 9 cut(s) | 194, 542, 567, 637, 805, 902, 1330, 1429, 1814 |
| HpaII | CCGG | 2 cut(s) | 560, 1010 |
| HphI | GGTGA | 1 cut(s) | 838 |
| Hpy166II | GTNNAC | 4 cut(s) | 328, 684, 958, 1672 |
| Hpy8I | GTNNAC | 4 cut(s) | 328, 684, 958, 1672 |
| HpyAV | CCTTC | 8 cut(s) | 405, 654, 666, 823, 1087, 1393, 1877, 1887 |
| HpyCH4III | ACNGT | 3 cut(s) | 257, 1327, 1663 |
| HpyCH4IV | ACGT | 3 cut(s) | 924, 1209, 1625 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 10, 161, 425, 460, 626, 659, 1145, 1927, 1960 |
| HpyF3I | CTNAG | 5 cut(s) | 198, 222, 308, 1675, 1856 |
| HpySE526I | ACGT | 3 cut(s) | 924, 1209, 1625 |
| HspAI | GCGC | 1 cut(s) | 660 |
| Kpn2I | TCCGGA | 1 cut(s) | 1009 |
| Ksp22I | TGATCA | 1 cut(s) | 1761 |
| Kzo9I | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| LguI | GCTCTTC | 2 cut(s) | 197, 453 |
| LmnI | GCTCC | 3 cut(s) | 163, 365, 1900 |
| LweI | GCATC | 6 cut(s) | 52, 85, 632, 647, 1003, 1278 |
| MaeI | CTAG | 4 cut(s) | 416, 941, 987, 1122 |
| MaeII | ACGT | 3 cut(s) | 924, 1209, 1625 |
| MaeIII | GTNAC | 4 cut(s) | 597, 868, 1021, 1621 |
| MalI | GATC | 7 cut(s) | 705, 1008, 1126, 1173, 1257, 1373, 1763 |
| MboI | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| MfeI | CAATTG | 1 cut(s) | 777 |
| MflI | RGATCY | 2 cut(s) | 1006, 1171 |
| MhlI | GDGCHC | 4 cut(s) | 221, 370, 973, 1905 |
| MlyI | GAGTC | 3 cut(s) | 576, 1423, 1823 |
| MmeI | TCCRAC | 2 cut(s) | 540, 1680 |
| Mph1103I | ATGCAT | 1 cut(s) | 67 |
| MroI | TCCGGA | 1 cut(s) | 1009 |
| MseI | TTAA | 6 cut(s) | 30, 68, 1280, 1298, 1520, 1538 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1073, 1636 |
| MspI | CCGG | 2 cut(s) | 560, 1010 |
| MspR9I | CCNGG | 3 cut(s) | 560, 754, 962 |
| MunI | CAATTG | 1 cut(s) | 777 |
| Mva1269I | GAATGC | 1 cut(s) | 950 |
| MvaI | CCWGG | 2 cut(s) | 754, 962 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 10, 161, 425, 460, 626, 659, 1145, 1927, 1960 |
| NciI | CCSGG | 1 cut(s) | 560 |
| NdeII | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| NlaIV | GGNNCC | 3 cut(s) | 1008, 1216, 1902 |
| NmuCI | GTSAC | 2 cut(s) | 597, 1021 |
| NsiI | ATGCAT | 1 cut(s) | 67 |
| NspI | RCATGY | 2 cut(s) | 1551, 1840 |
| NspV | TTCGAA | 1 cut(s) | 536 |
| OliI | CACNNNNGTG | 1 cut(s) | 1636 |
| PaeI | GCATGC | 1 cut(s) | 1840 |
| PagI | TCATGA | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 1547 |
| PciSI | GCTCTTC | 2 cut(s) | 197, 453 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 542 |
| PctI | GAATGC | 1 cut(s) | 950 |
| PfeI | GAWTC | 6 cut(s) | 194, 542, 637, 805, 902, 1330 |
| PflFI | GACNNNGTC | 1 cut(s) | 483 |
| PleI | GAGTC | 3 cut(s) | 575, 1423, 1822 |
| PpsI | GAGTC | 3 cut(s) | 575, 1423, 1822 |
| PscI | ACATGT | 1 cut(s) | 1547 |
| PshBI | ATTAAT | 1 cut(s) | 1280 |
| PsiI | TTATAA | 1 cut(s) | 1383 |
| Psp124BI | GAGCTC | 1 cut(s) | 370 |
| Psp6I | CCWGG | 2 cut(s) | 752, 960 |
| PspGI | CCWGG | 2 cut(s) | 752, 960 |
| PspN4I | GGNNCC | 3 cut(s) | 1008, 1216, 1902 |
| PspPI | GGNCC | 3 cut(s) | 1214, 1608, 1650 |
| PsuI | RGATCY | 2 cut(s) | 1006, 1171 |
| PsyI | GACNNNGTC | 1 cut(s) | 483 |
| RsaI | GTAC | 2 cut(s) | 129, 1673 |
| RsaNI | GTAC | 2 cut(s) | 128, 1672 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1073, 1636 |
| SacI | GAGCTC | 1 cut(s) | 370 |
| SapI | GCTCTTC | 2 cut(s) | 197, 453 |
| SaqAI | TTAA | 6 cut(s) | 30, 68, 1280, 1298, 1520, 1538 |
| Sau3AI | GATC | 7 cut(s) | 703, 1006, 1124, 1171, 1255, 1371, 1761 |
| Sau96I | GGNCC | 3 cut(s) | 1214, 1608, 1650 |
| SchI | GAGTC | 3 cut(s) | 576, 1423, 1823 |
| ScrFI | CCNGG | 3 cut(s) | 560, 754, 962 |
| SduI | GDGCHC | 4 cut(s) | 221, 370, 973, 1905 |
| SfaNI | GCATC | 6 cut(s) | 52, 85, 632, 647, 1003, 1278 |
| SfuI | TTCGAA | 1 cut(s) | 536 |
| SinI | GGWCC | 2 cut(s) | 1608, 1650 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1073, 1636 |
| SphI | GCATGC | 1 cut(s) | 1840 |
| SsiI | CCGC | 2 cut(s) | 621, 824 |
| SspMI | CTAG | 4 cut(s) | 416, 941, 987, 1122 |
| SstI | GAGCTC | 1 cut(s) | 370 |
| StyD4I | CCNGG | 3 cut(s) | 558, 752, 960 |
| StyI | CCWWGG | 1 cut(s) | 1617 |
| TaaI | ACNGT | 3 cut(s) | 257, 1327, 1663 |
| TaiI | ACGT | 3 cut(s) | 927, 1212, 1628 |
| TatI | WGTACW | 1 cut(s) | 1671 |
| TauI | GCSGC | 1 cut(s) | 623 |
| TfiI | GAWTC | 6 cut(s) | 194, 542, 637, 805, 902, 1330 |
| Tru1I | TTAA | 6 cut(s) | 30, 68, 1280, 1298, 1520, 1538 |
| Tru9I | TTAA | 6 cut(s) | 30, 68, 1280, 1298, 1520, 1538 |
| TscAI | CASTG | 3 cut(s) | 226, 1330, 1666 |
| TseFI | GTSAC | 2 cut(s) | 597, 1021 |
| Tsp45I | GTSAC | 2 cut(s) | 597, 1021 |
| TspGWI | ACGGA | 1 cut(s) | 895 |
| TspRI | CASTG | 3 cut(s) | 226, 1330, 1666 |
| Tth111I | GACNNNGTC | 1 cut(s) | 483 |
| VpaK11BI | GGWCC | 2 cut(s) | 1608, 1650 |
| VspI | ATTAAT | 1 cut(s) | 1280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 517 |
| XapI | RAATTY | 4 cut(s) | 70, 472, 1193, 1541 |
| XbaI | TCTAGA | 1 cut(s) | 1121 |
| XceI | RCATGY | 2 cut(s) | 1551, 1840 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 21, 1330 |
| XmiI | GTMKAC | 1 cut(s) | 957 |
| XspI | CTAG | 4 cut(s) | 416, 941, 987, 1122 |
| Zsp2I | ATGCAT | 1 cut(s) | 67 |