Rmu_sc0000706.1_g000007

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0031090
Physical Location & Seq
Reverse (-)
23308 .. 24863
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000007.1.cds

Sequence Viewer

Length: 1080 bp
atggctaccagcaggaaagccgacgaatcccgaccaagaaaaatgaaagccgatgaagcctcctcatcaccctcaaatcattggatttatgaggtttttttgtgcttcaagggtgaagacacgcgcaacaacttcacaggccatctctacctggccataaaggaggctggaatcaatgctttcaatgacaacaatgaactgaagaggggagagattatagatgaggaactggtgcaggcaatcaaagggtccaaaatctgtgtcatcgtcttctcaaggaggtatgcagattccagttggtgtcttgaggagctagtgaagatcatggacaatggggcaactagtcttttcaaggcgtttgatcagaaacatggagacaaagatgaagataaggtgaagaggtggagagctgctctcactgaagctgcaaatttgtctggctgggatcttagaaccaaaggtaatactctccatgccttgtgtttaccgggatctgatgaaattcaaggactcactctagacatgtggagcttaaaatttgagaaaagggctgaattaaggataaaagcatttgcaaaaaatgaagggattgagatttctcaaactcagtcatgtagagctcactggaggctacaaatatctccccaacaagtccttgcgaaattgaagattcttgatctcagttattcctattccttaaaacaatcaccagacttttcaactattccaaatctcgaggagttagtcctcgaaagctgctggcaattggcagaggttcaccagtccattggaggactgaaaaggctttctgtcattaatctcaggggatgcaaagttcttgaggagcttccaaggagtttctataagttaagatctatagttaatcttgttcttgatggctgtaaaagatttgagaaattggatcaggaaataggggacatgacatcgttgtctactctgcatgcaaatgaaacagccataacagaactgccgtcttccattgtgagattgaagaaccgtagatgtttctctatctactacatcggtcttccattggaggtttcaaaaggaataccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

359

Amino Acids

40.76

Weight (kDa)

8.27

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031090)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000706.1_g000007 Rmu_sc0008646.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 949
AccI GTMKAC 1 cut(s) 953
AccII CGCG 1 cut(s) 124
AclWI GGATC 3 cut(s) 453, 499, 930
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 3 cut(s) 430, 501, 536
AcuI CTGAAG 2 cut(s) 221, 441
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 8 cut(s) 109, 184, 352, 506, 667, 720, 1012, 1065
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
AluBI AGCT 7 cut(s) 313, 410, 425, 531, 620, 756, 847
AluI AGCT 7 cut(s) 313, 410, 425, 531, 620, 756, 847
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 3 cut(s) 453, 499, 930
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 2 cut(s) 139, 153
ApeKI GCWGC 3 cut(s) 410, 425, 756
ApoI RAATTY 3 cut(s) 430, 501, 536
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AseI ATTAAT 1 cut(s) 816
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 5 cut(s) 60, 125, 406, 699, 770
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 1 cut(s) 249
BalI TGGCCA 1 cut(s) 155
BanII GRGCYC 1 cut(s) 622
BbsI GAAGAC 4 cut(s) 123, 262, 987, 1040
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 397, 412, 743
BccI CCATC 2 cut(s) 150, 890
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 369
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 3 cut(s) 314, 342, 518
BfmI CTRYAG 1 cut(s) 876
BglII AGATCT 1 cut(s) 872
BisI GCNGC 3 cut(s) 411, 426, 757
BlsI GCNGC 3 cut(s) 412, 427, 758
Bme1390I CCNGG 2 cut(s) 152, 489
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 152, 489
BmsI GCATC 1 cut(s) 818
BpiI GAAGAC 4 cut(s) 123, 262, 987, 1040
BplI GAGNNNNNCTC 4 cut(s) 397, 429, 399, 431
BpmI CTGGAG 1 cut(s) 646
BpuEI CTTGAG 3 cut(s) 259, 326, 860
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 851
Bse1I ACTGG 4 cut(s) 234, 294, 629, 781
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 1 cut(s) 833
BseMII CTCAG 3 cut(s) 620, 694, 835
BseNI ACTGG 4 cut(s) 234, 294, 629, 781
BseRI GAGGAG 4 cut(s) 52, 323, 752, 857
BseXI GCAGC 3 cut(s) 397, 412, 743
BseYI CCCAGC 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 141, 155
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 950
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 2 cut(s) 141, 155
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
BspANI GGCC 2 cut(s) 141, 155
BspCNI CTCAG 3 cut(s) 619, 693, 834
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 3 cut(s) 453, 499, 930
BsrI ACTGG 4 cut(s) 234, 294, 629, 781
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
BssT1I CCWWGG 1 cut(s) 851
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 1019
Bst6I CTCTTC 2 cut(s) 197, 392
BstC8I GCNNGC 3 cut(s) 237, 761, 963
BstDEI CTNAG 4 cut(s) 449, 606, 680, 821
BstF5I GGATG 1 cut(s) 833
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 7 cut(s) 324, 364, 448, 494, 679, 875, 925
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 526, 965
BstSCI CCNGG 2 cut(s) 150, 487
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 397, 412, 743
BstV2I GAAGAC 4 cut(s) 123, 262, 987, 1040
BstX2I RGATCY 3 cut(s) 445, 491, 872
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 3 cut(s) 445, 491, 872
BsuRI GGCC 2 cut(s) 141, 155
BtsCI GGATG 1 cut(s) 833
BtsIMutI CAGTG 2 cut(s) 417, 622
Cac8I GCNNGC 3 cut(s) 237, 761, 963
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 249
CviAII CATG 7 cut(s) 325, 371, 473, 523, 612, 940, 962
DdeI CTNAG 4 cut(s) 449, 606, 680, 821
DpnI GATC 7 cut(s) 323, 363, 447, 493, 678, 874, 924
DpnII GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
DrdI GACNNNNNNGTC 1 cut(s) 949
DseDI GACNNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 197, 392
EarI CTCTTC 2 cut(s) 197, 392
Ecl136II GAGCTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 851
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 620
Eco57I CTGAAG 2 cut(s) 221, 441
Eco88I CYCGRG 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 851
EcoT38I GRGCYC 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 851
FaeI CATG 7 cut(s) 328, 374, 476, 526, 615, 943, 965
FaqI GGGAC 1 cut(s) 950
FatI CATG 7 cut(s) 324, 370, 472, 522, 611, 939, 961
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 953
Fnu4HI GCNGC 3 cut(s) 411, 426, 757
FokI GGATG 1 cut(s) 840
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 3 cut(s) 411, 426, 757
FspBI CTAG 3 cut(s) 314, 342, 518
GlaI GCGC 1 cut(s) 125
GluI GCNGC 3 cut(s) 411, 426, 757
GsaI CCCAGC 1 cut(s) 445
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 2 cut(s) 141, 155
HapII CCGG 1 cut(s) 488
HhaI GCGC 1 cut(s) 126
Hin1II CATG 7 cut(s) 328, 374, 476, 526, 615, 943, 965
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 5 cut(s) 26, 171, 290, 510, 670
HpaII CCGG 1 cut(s) 488
HphI GGTGA 5 cut(s) 60, 125, 406, 699, 770
Hpy166II GTNNAC 3 cut(s) 485, 778, 954
Hpy188I TCNGA 2 cut(s) 366, 496
Hpy188III TCNNGA 8 cut(s) 30, 305, 518, 674, 734, 839, 893, 926
Hpy8I GTNNAC 3 cut(s) 485, 778, 954
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 1019
HpyCH4V TGCA 7 cut(s) 235, 287, 428, 575, 831, 961, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 4 cut(s) 449, 606, 680, 821
Hsp92II CATG 7 cut(s) 328, 374, 476, 526, 615, 943, 965
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
LmnI GCTCC 3 cut(s) 310, 528, 844
Lsp1109I GCAGC 3 cut(s) 397, 412, 743
LweI GCATC 1 cut(s) 818
MaeI CTAG 3 cut(s) 314, 342, 518
MalI GATC 7 cut(s) 323, 363, 447, 493, 678, 874, 924
MboI GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 3 cut(s) 445, 491, 872
MhlI GDGCHC 1 cut(s) 622
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 7 cut(s) 430, 501, 536, 554, 662, 764, 917
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 504
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 6 cut(s) 533, 557, 698, 816, 869, 882
MslI CAYNNNNRTG 1 cut(s) 966
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 2 cut(s) 152, 489
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 489
NdeII GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
NlaIII CATG 7 cut(s) 328, 374, 476, 526, 615, 943, 965
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 2 cut(s) 526, 965
PaeI GCATGC 1 cut(s) 965
PaeR7I CTCGAG 1 cut(s) 734
PciI ACATGT 1 cut(s) 522
PfeI GAWTC 4 cut(s) 26, 171, 290, 670
PkrI GCNGC 3 cut(s) 412, 427, 758
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 816
Psp124BI GAGCTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 249
PsuI RGATCY 3 cut(s) 445, 491, 872
RseI CAYNNNNRTG 1 cut(s) 966
SacI GAGCTC 1 cut(s) 622
SaqAI TTAA 6 cut(s) 533, 557, 698, 816, 869, 882
SatI GCNGC 3 cut(s) 411, 426, 757
Sau3AI GATC 7 cut(s) 321, 361, 445, 491, 676, 872, 922
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 152, 489
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 1 cut(s) 818
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 4 cut(s) 274, 305, 734, 839
SmoI CTYRAG 4 cut(s) 274, 305, 734, 839
SpeI ACTAGT 1 cut(s) 341
SphI GCATGC 1 cut(s) 965
Sse9I AATT 7 cut(s) 430, 501, 536, 554, 662, 764, 917
SspMI CTAG 3 cut(s) 314, 342, 518
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 150, 487
StyI CCWWGG 1 cut(s) 851
TaaI ACNGT 1 cut(s) 1019
TaqI TCGA 2 cut(s) 735, 750
TaqII GACCGA 1 cut(s) 1034
TasI AATT 7 cut(s) 430, 501, 536, 554, 662, 764, 917
TfiI GAWTC 4 cut(s) 26, 171, 290, 670
Tru1I TTAA 6 cut(s) 533, 557, 698, 816, 869, 882
Tru9I TTAA 6 cut(s) 533, 557, 698, 816, 869, 882
TscAI CASTG 2 cut(s) 424, 629
TseI GCWGC 3 cut(s) 410, 425, 756
TspDTI ATGAA 7 cut(s) 59, 69, 210, 399, 513, 597, 984
TspRI CASTG 2 cut(s) 424, 629
VpaK11BI GGWCC 1 cut(s) 249
VspI ATTAAT 1 cut(s) 816
XapI RAATTY 3 cut(s) 430, 501, 536
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 2 cut(s) 526, 965
XhoI CTCGAG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 953
XspI CTAG 3 cut(s) 314, 342, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.