Rmu_sc0000744.1_g000113

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000744.1
Physical Location & Seq
Forward (+)
408873 .. 409205
333 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000744.1_g000113.1.cds

Sequence Viewer

Length: 333 bp
atggatcgtgtgttcatgcgaacacctacaaagcatgctcaagcagttatcttgatgcgatgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaaaagcattttggctatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgatttcaagtctgttgctgaatataattcagaagcatttcgcctacagtccatgttgaggttttgtggacagcctgtaacaaagcaagagctaattgagaaaactctctccaccttcctcatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

13.03

Weight (kDa)

9.0

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025460)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 3 cut(s) 178, 185, 214
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 118, 298
AluI AGCT 2 cut(s) 118, 298
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 243
AspLEI GCGC 2 cut(s) 130, 201
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 131
BmsI GCATC 3 cut(s) 45, 50, 97
BpuEI CTTGAG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 264
Bsp143I GATC 2 cut(s) 4, 99
BspCNI CTCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 99
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 130, 201
BstKTI GATC 2 cut(s) 7, 102
BstMBI GATC 2 cut(s) 4, 99
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 2 cut(s) 130, 201
CviAII CATG 3 cut(s) 16, 35, 259
CviJI RGCY 4 cut(s) 118, 147, 280, 298
CviKI_1 RGCY 4 cut(s) 118, 147, 280, 298
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 6, 101
DpnII GATC 2 cut(s) 4, 99
Eco47III AGCGCT 1 cut(s) 129
FaeI CATG 3 cut(s) 19, 38, 262
FatI CATG 3 cut(s) 15, 34, 258
FauNDI CATATG 1 cut(s) 66
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 129, 200
HaeII RGCGCY 1 cut(s) 131
HhaI GCGC 2 cut(s) 130, 201
Hin1II CATG 3 cut(s) 19, 38, 262
Hin6I GCGC 2 cut(s) 128, 199
HinP1I GCGC 2 cut(s) 128, 199
HinfI GANTC 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 83, 238
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 172, 331
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 3 cut(s) 19, 38, 262
HspAI GCGC 2 cut(s) 128, 199
Kzo9I GATC 2 cut(s) 4, 99
LpnPI CCDG 2 cut(s) 183, 294
LweI GCATC 3 cut(s) 45, 50, 97
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 6, 101
MboI GATC 2 cut(s) 4, 99
MluCI AATT 2 cut(s) 232, 300
MnlI CCTC 3 cut(s) 173, 176, 258
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeI CATATG 1 cut(s) 66
NdeII GATC 2 cut(s) 4, 99
NlaIII CATG 3 cut(s) 19, 38, 262
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 331
Sau3AI GATC 2 cut(s) 4, 99
SetI ASST 6 cut(s) 28, 120, 183, 269, 300, 323
SfaNI GCATC 3 cut(s) 45, 50, 97
SfcI CTRYAG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
SphI GCATGC 1 cut(s) 38
Sse9I AATT 2 cut(s) 232, 300
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 232, 300
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 4
XceI RCATGY 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.