Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000754.1

Orthogroup ID

OG0023053

Physical Location & Seq

Genomic Coordinates Forward (+)

16425 .. 17306

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000754.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgagcgcgttaacaagacagctgaccagattggtggcgctggggccggaggtggcaatgcatacctccgctgctcctccagaccaagcaactccaattccacaatttgcccccgacgagctcagaaaaggctctgatgtcctcatggagtcacttgagcgccaggacttcaccactgtcttcacctacctcggtggcgcgtcgatggagatccacaaggccctcaagcgctccaccaccatcagcaatgtcctccctcgccacgagcaaggcagcgtgttcgccgtcaagggctacgcgctcgggtcgggccttttgggtgtatgcattgccacctacggccctggtgccactaatctggtaagtgatctcgcagatgtgctcatggatagcattctgatggtggcaatcactggacaagtgcccagtcgcatgatcggaaccgatgcttttcacaagacgccgattgttgaggtaaccagatccatcaccaagcacaattaccttgttcttgatataaagggcattcctataattgttaaagaagcttttttcctggccacatcgggtagacccagcccgattttgattgatatacccaaagatgtgcagcaacagcttgtggttccggattgggaccaacccattaggttaactggttacatgtctaggttgcccaaaagccctaatgagttccatctagagcagattgtgaggttggtgtcggagtcgaaaaaaccgatgttgtatgttggtggagggtgtttgaacttgagtaaggagttgaggcggttcgtggagcttactgggatccctattactagtactttgatgggtctggggacttacctgagctctgatgaggatgacttgtcactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

293

Amino Acids

31.9

Weight (kDa)

6.08

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023053)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000754.1_g000007 Rmu_sc0006012.1_g000014
rosa_samantha	Rh6CG000800 Rh6DG000900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	3 cut(s)	8, 200, 299
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	2 cut(s)	69, 790
AclWI	GGATC	4 cut(s)	205, 477, 805, 818
AcoI	YGGCCR	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	1 cut(s)	826
AfeI	AGCGCT	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	1 cut(s)	769
AhlI	ACTAGT	1 cut(s)	821
AjnI	CCWGG	3 cut(s)	162, 343, 555
AluBI	AGCT	6 cut(s)	22, 121, 548, 619, 802, 855
AluI	AGCT	6 cut(s)	22, 121, 548, 619, 802, 855
Alw21I	GWGCWC	3 cut(s)	123, 384, 857
AlwI	GGATC	4 cut(s)	205, 477, 805, 818
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	628
Aor51HI	AGCGCT	1 cut(s)	230
AoxI	GGCC	5 cut(s)	44, 219, 310, 340, 558
ApeKI	GCWGC	3 cut(s)	71, 273, 610
AspLEI	GCGC	6 cut(s)	8, 40, 162, 200, 231, 301
AspS9I	GGNCC	5 cut(s)	44, 220, 310, 341, 637
AsuHPI	GGTGA	3 cut(s)	163, 175, 481
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	426
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	123, 857
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	123, 384, 857
BbvI	GCAGC	3 cut(s)	58, 285, 622
BccI	CCATC	6 cut(s)	199, 248, 394, 494, 705, 826
BceAI	ACGGC	2 cut(s)	269, 355
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	3 cut(s)	164, 345, 557
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	3 cut(s)	669, 701, 822
BfmI	CTRYAG	1 cut(s)	878
BfoI	RGCGCY	3 cut(s)	41, 163, 232
BisI	GCNGC	3 cut(s)	72, 274, 611
BlsI	GCNGC	3 cut(s)	73, 275, 612
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	164, 345, 557
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	5 cut(s)	44, 220, 310, 341, 637
BmiI	GGNNCC	6 cut(s)	45, 349, 442, 627, 638, 812
BmrFI	CCNGG	3 cut(s)	164, 345, 557
BmrI	ACTGGG	2 cut(s)	420, 816
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	2 cut(s)	420, 816
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	851
BpuEI	CTTGAG	3 cut(s)	176, 209, 793
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	190, 343
BsaWI	WCCGGW	1 cut(s)	628
Bse1I	ACTGG	4 cut(s)	418, 426, 661, 811
Bse3DI	GCAATG	3 cut(s)	63, 253, 327
Bse8I	GATNNNNATC	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	3 cut(s)	164, 345, 557
BseDI	CCNNGG	2 cut(s)	190, 343
BseGI	GGATG	1 cut(s)	871
BseJI	GATNNNNATC	1 cut(s)	209
BseMI	GCAATG	3 cut(s)	63, 253, 327
BseMII	CTCAG	2 cut(s)	136, 842
BseNI	ACTGG	4 cut(s)	418, 426, 661, 811
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	58, 285, 622
BseYI	CCCAGC	2 cut(s)	40, 575
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	3 cut(s)	8, 200, 299
BshFI	GGCC	5 cut(s)	46, 221, 312, 342, 560
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	123, 384, 857
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	47, 629
BslFI	GGGAC	2 cut(s)	650, 856
BsmFI	GGGAC	2 cut(s)	650, 856
BsmI	GAATGC	2 cut(s)	393, 525
BsnI	GGCC	5 cut(s)	46, 221, 312, 342, 560
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	4 cut(s)	123, 384, 426, 857
Bsp13I	TCCGGA	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	210, 367, 435, 482, 810
BspACI	CCGC	2 cut(s)	69, 790
BspANI	GGCC	5 cut(s)	46, 221, 312, 342, 560
BspCNI	CTCAG	2 cut(s)	135, 843
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	3 cut(s)	8, 200, 299
BspLI	GGNNCC	6 cut(s)	45, 349, 442, 627, 638, 812
BspPI	GGATC	4 cut(s)	205, 477, 805, 818
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	63, 253, 327
BsrI	ACTGG	4 cut(s)	418, 426, 661, 811
BssECI	CCNNGG	2 cut(s)	190, 343
BssMI	GATC	5 cut(s)	210, 367, 435, 482, 810
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	164, 345, 557
Bst4CI	ACNGT	2 cut(s)	178, 879
BstACI	GRCGYC	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	122, 851
BstEII	GGTNACC	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	871
BstFNI	CGCG	3 cut(s)	8, 200, 299
BstH2I	RGCGCY	3 cut(s)	41, 163, 232
BstHHI	GCGC	6 cut(s)	8, 40, 162, 200, 231, 301
BstKTI	GATC	5 cut(s)	213, 370, 438, 485, 813
BstMBI	GATC	5 cut(s)	210, 367, 435, 482, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstNI	CCWGG	3 cut(s)	164, 345, 557
BstNSI	RCATGY	1 cut(s)	667
BstPI	GGTNACC	1 cut(s)	475
BstSCI	CCNGG	3 cut(s)	162, 343, 555
BstSFI	CTRYAG	1 cut(s)	878
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	3 cut(s)	8, 200, 299
BstV1I	GCAGC	3 cut(s)	58, 285, 622
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	3 cut(s)	210, 482, 810
BstXI	CCANNNNNNTGG	2 cut(s)	34, 358
BstYI	RGATCY	3 cut(s)	210, 482, 810
BsuRI	GGCC	5 cut(s)	46, 221, 312, 342, 560
BtsCI	GGATG	1 cut(s)	871
BtsIMutI	CAGTG	3 cut(s)	174, 411, 875
CfoI	GCGC	6 cut(s)	8, 40, 162, 200, 231, 301
Cfr13I	GGNCC	5 cut(s)	44, 220, 310, 341, 637
CseI	GACGC	2 cut(s)	189, 469
Csp6I	GTAC	1 cut(s)	825
CviAII	CATG	4 cut(s)	145, 385, 433, 664
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	2 cut(s)	122, 851
DpnI	GATC	5 cut(s)	212, 369, 437, 484, 812
DpnII	GATC	5 cut(s)	210, 367, 435, 482, 810
EaeI	YGGCCR	1 cut(s)	558
Ecl136II	GAGCTC	2 cut(s)	121, 855
Eco24I	GRGCYC	2 cut(s)	123, 857
Eco47I	GGWCC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	230
Eco53kI	GAGCTC	2 cut(s)	121, 855
Eco88I	CYCGRG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	475
EcoICRI	GAGCTC	2 cut(s)	121, 855
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	162, 343, 555
EcoT22I	ATGCAT	2 cut(s)	63, 329
EcoT38I	GRGCYC	2 cut(s)	123, 857
FaeI	CATG	4 cut(s)	148, 388, 436, 667
FaqI	GGGAC	2 cut(s)	650, 856
FatI	CATG	4 cut(s)	144, 384, 432, 663
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	72, 274, 611
FokI	GGATG	1 cut(s)	878
FriOI	GRGCYC	2 cut(s)	123, 857
Fsp4HI	GCNGC	3 cut(s)	72, 274, 611
FspBI	CTAG	3 cut(s)	669, 701, 822
GlaI	GCGC	6 cut(s)	7, 39, 161, 199, 230, 300
GluI	GCNGC	3 cut(s)	72, 274, 611
GsaI	CCCAGC	2 cut(s)	44, 579
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	3 cut(s)	41, 163, 232
HaeIII	GGCC	5 cut(s)	46, 221, 312, 342, 560
HapII	CCGG	2 cut(s)	47, 629
HgaI	GACGC	2 cut(s)	189, 469
HhaI	GCGC	6 cut(s)	8, 40, 162, 200, 231, 301
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	148, 388, 436, 667
Hin6I	GCGC	6 cut(s)	6, 38, 160, 198, 229, 299
HinP1I	GCGC	6 cut(s)	6, 38, 160, 198, 229, 299
HincII	GTYRAC	2 cut(s)	12, 654
HindII	GTYRAC	2 cut(s)	12, 654
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	2 cut(s)	149, 728
HpaI	GTTAAC	2 cut(s)	12, 654
HpaII	CCGG	2 cut(s)	47, 629
HphI	GGTGA	3 cut(s)	163, 175, 481
Hpy166II	GTNNAC	3 cut(s)	12, 572, 654
Hpy188I	TCNGA	6 cut(s)	125, 136, 399, 440, 727, 859
Hpy188III	TCNNGA	4 cut(s)	80, 512, 629, 701
Hpy8I	GTNNAC	3 cut(s)	12, 572, 654
Hpy99I	CGWCG	2 cut(s)	119, 205
HpyCH4III	ACNGT	2 cut(s)	178, 879
HpyCH4V	TGCA	3 cut(s)	61, 327, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	2 cut(s)	122, 851
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	148, 388, 436, 667
HspAI	GCGC	6 cut(s)	6, 38, 160, 198, 229, 299
Kpn2I	TCCGGA	1 cut(s)	628
KspAI	GTTAAC	2 cut(s)	12, 654
Kzo9I	GATC	5 cut(s)	210, 367, 435, 482, 810
LmnI	GCTCC	3 cut(s)	79, 236, 799
Lsp1109I	GCAGC	3 cut(s)	58, 285, 622
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	669, 701, 822
MaeIII	GTNAC	4 cut(s)	150, 475, 659, 873
MalI	GATC	5 cut(s)	212, 369, 437, 484, 812
MboI	GATC	5 cut(s)	210, 367, 435, 482, 810
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	3 cut(s)	210, 482, 810
MhlI	GDGCHC	4 cut(s)	123, 384, 426, 857
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	4 cut(s)	96, 104, 499, 534
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	158, 737
MmeI	TCCRAC	1 cut(s)	705
Mox20I	TGGCCA	1 cut(s)	560
Mph1103I	ATGCAT	2 cut(s)	63, 329
MroI	TCCGGA	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	3 cut(s)	11, 540, 653
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	22, 71
MspI	CCGG	2 cut(s)	47, 629
MspR9I	CCNGG	3 cut(s)	164, 345, 557
Mva1269I	GAATGC	2 cut(s)	393, 525
MvaI	CCWGG	3 cut(s)	164, 345, 557
MvnI	CGCG	3 cut(s)	8, 200, 299
MwoI	GCNNNNNNNGC	1 cut(s)	616
NdeII	GATC	5 cut(s)	210, 367, 435, 482, 810
NlaIII	CATG	4 cut(s)	148, 388, 436, 667
NlaIV	GGNNCC	6 cut(s)	45, 349, 442, 627, 638, 812
NmuCI	GTSAC	2 cut(s)	150, 873
NsiI	ATGCAT	2 cut(s)	63, 329
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	737
PctI	GAATGC	2 cut(s)	393, 525
PkrI	GCNGC	3 cut(s)	73, 275, 612
PleI	GAGTC	2 cut(s)	157, 736
PpsI	GAGTC	2 cut(s)	157, 736
PscI	ACATGT	1 cut(s)	663
Psp124BI	GAGCTC	2 cut(s)	123, 857
Psp6I	CCWGG	3 cut(s)	162, 343, 555
PspEI	GGTNACC	1 cut(s)	475
PspFI	CCCAGC	2 cut(s)	40, 575
PspGI	CCWGG	3 cut(s)	162, 343, 555
PspN4I	GGNNCC	6 cut(s)	45, 349, 442, 627, 638, 812
PspPI	GGNCC	5 cut(s)	44, 220, 310, 341, 637
PsuI	RGATCY	3 cut(s)	210, 482, 810
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	2 cut(s)	123, 857
SaqAI	TTAA	3 cut(s)	11, 540, 653
SatI	GCNGC	3 cut(s)	72, 274, 611
Sau3AI	GATC	5 cut(s)	210, 367, 435, 482, 810
Sau96I	GGNCC	5 cut(s)	44, 220, 310, 341, 637
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	2 cut(s)	158, 737
ScrFI	CCNGG	3 cut(s)	164, 345, 557
SduI	GDGCHC	4 cut(s)	123, 384, 426, 857
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	878
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	155, 224, 772
SmoI	CTYRAG	3 cut(s)	155, 224, 772
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	4 cut(s)	96, 104, 499, 534
SsiI	CCGC	2 cut(s)	69, 790
SspMI	CTAG	3 cut(s)	669, 701, 822
SstI	GAGCTC	2 cut(s)	123, 857
StyD4I	CCNGG	3 cut(s)	162, 343, 555
TaaI	ACNGT	2 cut(s)	178, 879
TaqI	TCGA	2 cut(s)	203, 731
TasI	AATT	4 cut(s)	96, 104, 499, 534
TatI	WGTACW	1 cut(s)	824
Tru1I	TTAA	3 cut(s)	11, 540, 653
Tru9I	TTAA	3 cut(s)	11, 540, 653
TscAI	CASTG	3 cut(s)	181, 418, 882
TseFI	GTSAC	2 cut(s)	150, 873
TseI	GCWGC	3 cut(s)	71, 273, 610
Tsp45I	GTSAC	2 cut(s)	150, 873
TspRI	CASTG	3 cut(s)	181, 418, 882
VpaK11BI	GGWCC	1 cut(s)	637
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	3 cut(s)	669, 701, 822
ZrmI	AGTACT	1 cut(s)	826
Zsp2I	ATGCAT	2 cut(s)	63, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.