Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0023053

Physical Location & Seq

Genomic Coordinates Forward (+)

233457 .. 234176

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATCCATCAGGCCCTCACGCGCTCCTCCACCATCCGCAATGTTCTCCCCCGCCACGAGCAAGGTGGCATCTTCGCTGCTGAGGGCTACGCGCGCGCCTCGGGCCTTCCCAGCGTCTGTATTGCAACCTCGGGCCCTGGCGCTACCAACTTGGTCAGTGGCCTTGCTGACGCACTCCTTGACAGCGTTCCGGTCGTCGCTATCACCGGACAAGTCCCCCGCCGGATGATCGGTACCGACGCTTTTCAAGAGACCCCAATTGTAGAGGTAACCAGGTCCATTACAAAGCATAACTATCTTGTTCTTGATGTTGAAGAAATTCCTAGAATTGTTAGTGAGGCATTTTTCTTGGCCACCTCCGGCCGCCCCGGCCCAGTTTTGATAGATATACCAAAAGACATACAGCAACAGCTTGTCGTTCCGGATTGGAATCAACCCATTAGATTAGCAGGGTACATGTCTAGGCTGCCCAATCCTCCCAATGAGGCCCATTTGGAGCAGATTGTAAGGTTGGTTTCCGAATCCAAGAGGCCTGTGTTGTATGTTGGTGGAGGGTGCTTGAACTCGAGTGAGGAATTGAGGCGATTTGCGGAGTTTACAGGGATCCCTGTCGCGACTACCTTGATGGGTCTCGGGGCATATCCTAGCTCAGATGAGCTGTCACTCCAAATGTTGGGAATGCATGGGACAGTGCATGCTAATTATGCAGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

239

Amino Acids

25.78

Weight (kDa)

5.52

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	3 - 85	5.6e-26	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	166 - 238	4.1e-22	Thiamine pyrophosphate enzyme, central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023053)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000754.1_g000007 Rmu_sc0006012.1_g000014
rosa_samantha	Rh6CG000800 Rh6DG000900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccII	CGCG	5 cut(s)	25, 95, 97, 99, 617
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	5 cut(s)	40, 55, 223, 367, 593
AclWI	GGATC	2 cut(s)	601, 614
AcoI	YGGCCR	2 cut(s)	354, 364
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	2 cut(s)	238, 458
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	251, 317, 565
AjnI	CCWGG	2 cut(s)	139, 275
AluBI	AGCT	3 cut(s)	415, 651, 661
AluI	AGCT	3 cut(s)	415, 651, 661
Alw26I	GTCTC	2 cut(s)	248, 638
AlwI	GGATC	2 cut(s)	601, 614
AlwNI	CAGNNNCTG	1 cut(s)	120
Ama87I	CYCGRG	4 cut(s)	103, 133, 568, 635
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	9 cut(s)	15, 106, 136, 163, 354, 364, 373, 489, 533
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	80, 469
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	5 cut(s)	27, 97, 99, 101, 146
AspS9I	GGNCC	7 cut(s)	16, 106, 136, 137, 279, 374, 490
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	4 cut(s)	103, 133, 568, 635
AvaII	GGWCC	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	67, 456
BccI	CCATC	3 cut(s)	18, 44, 622
BciT130I	CCWGG	2 cut(s)	141, 277
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	248, 638
BfaI	CTAG	3 cut(s)	327, 465, 648
BfoI	RGCGCY	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	372
BisI	GCNGC	3 cut(s)	81, 367, 470
BlsI	GCNGC	3 cut(s)	82, 368, 471
Bme1390I	CCNGG	3 cut(s)	141, 277, 372
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	4 cut(s)	103, 133, 568, 635
BmgT120I	GGNCC	7 cut(s)	16, 106, 136, 137, 279, 374, 490
BmiI	GGNNCC	3 cut(s)	138, 238, 608
BmrFI	CCNGG	3 cut(s)	141, 277, 372
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	2 cut(s)	248, 638
BsaJI	CCNNGG	4 cut(s)	102, 132, 139, 370
BsaWI	WCCGGW	3 cut(s)	193, 209, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	141, 277
BseDI	CCNNGG	4 cut(s)	102, 132, 139, 370
BseGI	GGATG	2 cut(s)	36, 234
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	75, 666
BseNI	ACTGG	1 cut(s)	377
BsePI	GCGCGC	2 cut(s)	95, 97
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	67, 456
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	5 cut(s)	25, 95, 97, 99, 617
Bsh1285I	CGRYCG	2 cut(s)	198, 367
BshFI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 535
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	198, 367
BsiHKCI	CYCGRG	4 cut(s)	103, 133, 568, 635
BsiSI	CCGG	6 cut(s)	194, 210, 226, 363, 372, 425
BslFI	GGGAC	2 cut(s)	203, 703
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	248, 638
BsmFI	GGGAC	2 cut(s)	203, 703
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 535
Bso31I	GGTCTC	2 cut(s)	248, 638
BsoBI	CYCGRG	4 cut(s)	103, 133, 568, 635
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	6, 231, 606
Bsp68I	TCGCGA	1 cut(s)	617
BspACI	CCGC	5 cut(s)	40, 55, 223, 367, 593
BspANI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 535
BspCNI	CTCAG	2 cut(s)	76, 665
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BspLI	GGNNCC	3 cut(s)	138, 238, 608
BspPI	GGATC	2 cut(s)	601, 614
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	2 cut(s)	248, 638
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	4 cut(s)	102, 132, 139, 370
BssHII	GCGCGC	2 cut(s)	95, 97
BssMI	GATC	3 cut(s)	6, 231, 606
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	141, 277
Bst4CI	ACNGT	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	97, 99, 699
BstDEI	CTNAG	2 cut(s)	84, 652
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	36, 234
BstFNI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	5 cut(s)	27, 97, 99, 101, 146
BstKTI	GATC	3 cut(s)	9, 234, 609
BstMAI	GTCTC	2 cut(s)	248, 638
BstMBI	GATC	3 cut(s)	6, 231, 606
BstMCI	CGRYCG	2 cut(s)	198, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 105, 114, 372, 707
BstNI	CCWGG	2 cut(s)	141, 277
BstNSI	RCATGY	2 cut(s)	463, 701
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	139, 275, 370
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BstV1I	GCAGC	2 cut(s)	67, 456
BstX2I	RGATCY	2 cut(s)	6, 606
BstYI	RGATCY	2 cut(s)	6, 606
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 535
BtsCI	GGATG	2 cut(s)	36, 234
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	166, 699, 717
BtuMI	TCGCGA	1 cut(s)	617
Cac8I	GCNNGC	3 cut(s)	97, 99, 699
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	5 cut(s)	27, 97, 99, 101, 146
Cfr13I	GGNCC	7 cut(s)	16, 106, 136, 137, 279, 374, 490
CseI	GACGC	3 cut(s)	106, 182, 251
CsiI	ACCWGGT	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	237, 457
CviAII	CATG	3 cut(s)	460, 686, 698
CviQI	GTAC	2 cut(s)	237, 457
DdeI	CTNAG	2 cut(s)	84, 652
DpnI	GATC	3 cut(s)	8, 233, 608
DpnII	GATC	3 cut(s)	6, 231, 606
EaeI	YGGCCR	2 cut(s)	354, 364
EagI	CGGCCG	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	2 cut(s)	248, 638
Eco47I	GGWCC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	364
Eco88I	CYCGRG	4 cut(s)	103, 133, 568, 635
Eco91I	GGTNACC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	16, 137
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	139, 275
EcoT22I	ATGCAT	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	3 cut(s)	463, 689, 701
FaiI	YATR	9 cut(s)	294, 392, 404, 461, 546, 643, 687, 699, 708
FaqI	GGGAC	2 cut(s)	203, 703
FatI	CATG	3 cut(s)	459, 685, 697
FauI	CCCGC	2 cut(s)	62, 230
Fnu4HI	GCNGC	3 cut(s)	81, 367, 470
FokI	GGATG	2 cut(s)	23, 241
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	81, 367, 470
FspBI	CTAG	3 cut(s)	327, 465, 648
GlaI	GCGC	5 cut(s)	26, 96, 98, 100, 145
GluI	GCNGC	3 cut(s)	81, 367, 470
GsaI	CCCAGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 535
HapII	CCGG	6 cut(s)	194, 210, 226, 363, 372, 425
HgaI	GACGC	3 cut(s)	106, 182, 251
HhaI	GCGC	5 cut(s)	27, 97, 99, 101, 146
Hin1II	CATG	3 cut(s)	463, 689, 701
Hin6I	GCGC	5 cut(s)	25, 95, 97, 99, 144
HinP1I	GCGC	5 cut(s)	25, 95, 97, 99, 144
HinfI	GANTC	2 cut(s)	433, 524
HpaII	CCGG	6 cut(s)	194, 210, 226, 363, 372, 425
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	2 cut(s)	523, 655
Hpy188III	TCNNGA	4 cut(s)	251, 308, 425, 616
Hpy8I	GTNNAC	1 cut(s)	600
Hpy99I	CGWCG	2 cut(s)	203, 245
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4V	TGCA	4 cut(s)	128, 685, 697, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 105, 114, 372, 707
HpyF3I	CTNAG	2 cut(s)	84, 652
Hsp92II	CATG	3 cut(s)	463, 689, 701
HspAI	GCGC	5 cut(s)	25, 95, 97, 99, 144
Kpn2I	TCCGGA	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	6, 231, 606
LmnI	GCTCC	2 cut(s)	32, 499
Lsp1109I	GCAGC	2 cut(s)	67, 456
LweI	GCATC	1 cut(s)	81
MabI	ACCWGGT	1 cut(s)	275
MaeI	CTAG	3 cut(s)	327, 465, 648
MaeIII	GTNAC	2 cut(s)	271, 663
MalI	GATC	3 cut(s)	8, 233, 608
MauBI	CGCGCGCG	1 cut(s)	95
MboI	GATC	3 cut(s)	6, 231, 606
MboII	GAAGA	2 cut(s)	67, 329
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	6, 606
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	261, 321, 330, 578, 703
MluNI	TGGCCA	1 cut(s)	356
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	6 cut(s)	194, 210, 226, 363, 372, 425
MspR9I	CCNGG	3 cut(s)	141, 277, 372
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	2 cut(s)	141, 277
MvnI	CGCG	5 cut(s)	25, 95, 97, 99, 617
MwoI	GCNNNNNNNGC	5 cut(s)	96, 105, 114, 372, 707
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	6, 231, 606
NlaIII	CATG	3 cut(s)	463, 689, 701
NlaIV	GGNNCC	3 cut(s)	138, 238, 608
NmuCI	GTSAC	1 cut(s)	663
NruI	TCGCGA	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	687
NspI	RCATGY	2 cut(s)	463, 701
PaeI	GCATGC	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	568
PauI	GCGCGC	2 cut(s)	95, 97
PceI	AGGCCT	1 cut(s)	535
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	433, 524
PflMI	CCANNNNNTGG	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	82, 368, 471
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	139, 275
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	139, 275
PspN4I	GGNNCC	3 cut(s)	138, 238, 608
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	7 cut(s)	16, 106, 136, 137, 279, 374, 490
PspXI	VCTCGAGB	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	6, 606
PteI	GCGCGC	2 cut(s)	95, 97
RruI	TCGCGA	1 cut(s)	617
RsaI	GTAC	2 cut(s)	238, 458
RsaNI	GTAC	2 cut(s)	237, 457
SatI	GCNGC	3 cut(s)	81, 367, 470
Sau3AI	GATC	3 cut(s)	6, 231, 606
Sau96I	GGNCC	7 cut(s)	16, 106, 136, 137, 279, 374, 490
ScrFI	CCNGG	3 cut(s)	141, 277, 372
SduI	GDGCHC	1 cut(s)	140
SexAI	ACCWGGT	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	81
SfiI	GGCCNNNNNGGCC	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	568
SinI	GGWCC	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	5 cut(s)	261, 321, 330, 578, 703
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	5 cut(s)	40, 55, 223, 367, 593
SspMI	CTAG	3 cut(s)	327, 465, 648
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	139, 275, 370
TaaI	ACNGT	1 cut(s)	694
TaqI	TCGA	1 cut(s)	569
TasI	AATT	5 cut(s)	261, 321, 330, 578, 703
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	433, 524
TscAI	CASTG	3 cut(s)	166, 699, 717
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	2 cut(s)	80, 469
Tsp45I	GTSAC	1 cut(s)	663
TspRI	CASTG	3 cut(s)	166, 699, 717
Van91I	CCANNNNNTGG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	2 cut(s)	463, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	3 cut(s)	327, 465, 648
Zsp2I	ATGCAT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.