Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000760.1

Orthogroup ID

OG0025489

Physical Location & Seq

Genomic Coordinates Forward (+)

50449 .. 53075

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atggtagagctggtggtgtcggagaagattgttgaacgattggccgcacagtgtttgttttcaacggtggaggccggagccgacctcagtcacagggacgacgacgacggtactggatcaaaaggcactgtagttggtgcattgaacgctcctcataccggaaagcgatgcaaatcaattttgggtgcccagagcattttctggtatacacgtctattgggtgcaaaaaaaactttccggtggacggtagccgatgaccggaatccggcgaaagttgaccggattctcgcggctggtgacgggactccggcgaagtctctcatggtttctctctctctaagtaacaaaggggtctcagtgatgctttgcctctctgctgttttgttaagttctttcatggccatggctgcagccggtaatttctatcaagactttgacatcacattcggcgaacaacgtgctaagatattcaacggaggacagcatctcacactcgacctcgaccagtattccggatctggtttcaagtccaagaaggagtacttgtttggaaggatcgacatgcaaatcaaacttgtcgctggcaactcagctggcactgtcactgcatattatttgtcttctcaaggtccaactcatgatgaaatcgattttgagtttttgggaaactcttctggtgaaccctacactctccacaccaatgtgttcagccaggggaaagggaacagagaacaacaattccatctttggtttgatcctacaaacgccttccatacctactcgcttgtctggaacagccaacgcattatattcttggtggataatattccaattagagtgttcaacaacttggagtcagttggtgttccattccccaaaaaccaaccgatgaggatttactcgagcctgtggaatgctgatgactgggctacacaaggtgggcgtgtgaagactgactggactcacgctcctttcactgcctcgtacagaaacttcaaggccaatgcttgcgtcgctggctcatcgtcatcatcatgcggtgtctccactactgcttcaactaattccttaactgatgaacagagtgcatggcagaatcaaggtctagatgccgcaggccgaaacaggataagatgggtgcagcagaagttcatggtctacaactactgtactgacctaaaacgatttccccaaggtcttccggtggaatgtagacgatcaaggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

409

Amino Acids

45.26

Weight (kDa)

8.72

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	142 - 321	2.7e-67	Glycosyl hydrolases family 16
XET_C	PF06955	361 - 404	3.8e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025489)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000760.1_g000017
rosa_roxburghii	Rroxscaffold_2G00110870
rosa_samantha	Rh2AG424600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	3 cut(s)	206, 1158, 1213
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	4 cut(s)	45, 290, 1038, 1113
AclWI	GGATC	4 cut(s)	124, 523, 563, 749
AcoI	YGGCCR	2 cut(s)	42, 399
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	4 cut(s)	112, 542, 986, 1171
AfiI	CCNNNNNNNGG	4 cut(s)	158, 244, 258, 265
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	8 cut(s)	35, 63, 145, 472, 526, 844, 997, 1059
AjiI	CACGTC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	711
AleI	CACNNNNGTG	1 cut(s)	701
AloI	GAACNNNNNNTCC	2 cut(s)	723, 755
AluBI	AGCT	2 cut(s)	10, 593
AluI	AGCT	2 cut(s)	10, 593
Alw26I	GTCTC	3 cut(s)	321, 358, 1048
AlwI	GGATC	4 cut(s)	124, 523, 563, 749
Ama87I	CYCGRG	1 cut(s)	901
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	5 cut(s)	42, 72, 399, 999, 1117
ApeKI	GCWGC	3 cut(s)	407, 410, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	308, 689
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	2 cut(s)	977, 1009
BbsI	GAAGAC	3 cut(s)	612, 956, 1190
BbvI	GCAGC	3 cut(s)	394, 422, 1153
BccI	CCATC	2 cut(s)	750, 1128
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	321, 358, 1048
BfaI	CTAG	2 cut(s)	1106, 1228
BfmI	CTRYAG	2 cut(s)	129, 408
BisI	GCNGC	6 cut(s)	45, 291, 408, 411, 1113, 1142
BlsI	GCNGC	6 cut(s)	46, 292, 409, 412, 1114, 1143
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	901
BmgBI	CACGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	79, 187
BmrFI	CCNGG	1 cut(s)	713
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	4 cut(s)	158, 351, 493, 1099
BmuI	ACTGGG	1 cut(s)	934
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	3 cut(s)	612, 956, 1190
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpuEI	CTTGAG	1 cut(s)	609
Bsa29I	ATCGAT	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	402, 712, 1192
BsaWI	WCCGGW	6 cut(s)	158, 237, 258, 279, 512, 1201
BsaXI	ACNNNNNCTCC	4 cut(s)	530, 560, 952, 982
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 244, 258, 265
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	4 cut(s)	118, 505, 929, 962
Bse8I	GATNNNNATC	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	713
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	402, 712, 1192
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	4 cut(s)	158, 244, 258, 265
BseMII	CTCAG	3 cut(s)	100, 369, 603
BseNI	ACTGG	4 cut(s)	118, 505, 929, 962
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	394, 422, 1153
BsgI	GTGCAG	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	5 cut(s)	44, 74, 401, 1001, 1119
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	901
BslFI	GGGAC	2 cut(s)	110, 316
BslI	CCNNNNNNNGG	4 cut(s)	158, 244, 258, 265
BsmAI	GTCTC	3 cut(s)	321, 358, 1048
BsmFI	GGGAC	2 cut(s)	110, 316
BsmI	GAATGC	1 cut(s)	919
BsnI	GGCC	5 cut(s)	44, 74, 401, 1001, 1119
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	5 cut(s)	116, 515, 555, 754, 1217
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	4 cut(s)	45, 290, 1038, 1113
BspANI	GGCC	5 cut(s)	44, 74, 401, 1001, 1119
BspCNI	CTCAG	3 cut(s)	99, 368, 602
BspDI	ATCGAT	1 cut(s)	648
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	79, 187
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	4 cut(s)	124, 523, 563, 749
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	4 cut(s)	118, 505, 929, 962
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	402, 712, 1192
BssMI	GATC	5 cut(s)	116, 515, 555, 754, 1217
BssNAI	GTATAC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	402, 1192
Bst1107I	GTATAC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	7 cut(s)	51, 67, 110, 130, 247, 601, 1169
Bst6I	CTCTTC	1 cut(s)	676
BstC8I	GCNNGC	5 cut(s)	583, 595, 1009, 1018, 1117
BstDEI	CTNAG	5 cut(s)	86, 338, 355, 462, 589
BstDSI	CCRYGG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	5 cut(s)	119, 518, 558, 757, 1220
BstMAI	GTCTC	3 cut(s)	321, 358, 1048
BstMBI	GATC	5 cut(s)	116, 515, 555, 754, 1217
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 407, 1013, 1017
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	565
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	711
BstSFI	CTRYAG	2 cut(s)	129, 408
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	394, 422, 1153
BstV2I	GAAGAC	3 cut(s)	612, 956, 1190
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BstZ17I	GTATAC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	5 cut(s)	44, 74, 401, 1001, 1119
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	212
BtsI	GCAGTG	2 cut(s)	603, 975
BtsIMutI	CAGTG	6 cut(s)	56, 126, 363, 597, 603, 975
Cac8I	GCNNGC	5 cut(s)	583, 595, 1009, 1018, 1117
CciI	TCATGA	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	629
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	4 cut(s)	111, 541, 985, 1170
CviAII	CATG	8 cut(s)	322, 397, 403, 562, 638, 1035, 1089, 1153
CviQI	GTAC	4 cut(s)	111, 541, 985, 1170
DdeI	CTNAG	5 cut(s)	86, 338, 355, 462, 589
DpnI	GATC	5 cut(s)	118, 517, 557, 756, 1219
DpnII	GATC	5 cut(s)	116, 515, 555, 754, 1217
DraIII	CACNNNGTG	1 cut(s)	938
EaeI	YGGCCR	2 cut(s)	42, 399
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	2 cut(s)	402, 1192
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	901
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	402, 1192
ErhI	CCWWGG	2 cut(s)	402, 1192
FaeI	CATG	8 cut(s)	325, 400, 406, 565, 641, 1038, 1092, 1156
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	110, 316
FatI	CATG	8 cut(s)	321, 396, 402, 561, 637, 1034, 1088, 1152
FblI	GTMKAC	3 cut(s)	206, 1158, 1213
Fnu4HI	GCNGC	6 cut(s)	45, 291, 408, 411, 1113, 1142
Fsp4HI	GCNGC	6 cut(s)	45, 291, 408, 411, 1113, 1142
FspBI	CTAG	2 cut(s)	1106, 1228
GluI	GCNGC	6 cut(s)	45, 291, 408, 411, 1113, 1142
HaeIII	GGCC	5 cut(s)	44, 74, 401, 1001, 1119
HgaI	GACGC	1 cut(s)	1000
Hin1II	CATG	8 cut(s)	325, 400, 406, 565, 641, 1038, 1092, 1156
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	6 cut(s)	262, 283, 304, 854, 961, 1096
HphI	GGTGA	2 cut(s)	308, 689
Hpy166II	GTNNAC	6 cut(s)	207, 243, 277, 680, 1159, 1214
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	5 cut(s)	428, 513, 638, 790, 1106
Hpy8I	GTNNAC	6 cut(s)	207, 243, 277, 680, 1159, 1214
Hpy99I	CGWCG	4 cut(s)	104, 107, 110, 1016
HpyAV	CCTTC	3 cut(s)	529, 546, 778
HpyCH4III	ACNGT	7 cut(s)	51, 67, 110, 130, 247, 601, 1169
HpyCH4IV	ACGT	2 cut(s)	211, 457
HpyCH4V	TGCA	8 cut(s)	140, 171, 224, 410, 565, 608, 1088, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 407, 1013, 1017
HpyF3I	CTNAG	5 cut(s)	86, 338, 355, 462, 589
HpySE526I	ACGT	2 cut(s)	211, 457
Hsp92II	CATG	8 cut(s)	325, 400, 406, 565, 641, 1038, 1092, 1156
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	5 cut(s)	116, 515, 555, 754, 1217
LmnI	GCTCC	3 cut(s)	77, 154, 973
Lsp1109I	GCAGC	3 cut(s)	394, 422, 1153
LweI	GCATC	4 cut(s)	158, 351, 493, 1099
MaeI	CTAG	2 cut(s)	1106, 1228
MaeII	ACGT	2 cut(s)	211, 457
MaeIII	GTNAC	4 cut(s)	89, 296, 341, 601
MalI	GATC	5 cut(s)	118, 517, 557, 756, 1219
MboI	GATC	5 cut(s)	116, 515, 555, 754, 1217
MboII	GAAGA	5 cut(s)	37, 612, 663, 961, 1190
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	5 cut(s)	177, 418, 737, 831, 1063
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	298, 863, 955
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	8 cut(s)	64, 95, 162, 380, 470, 509, 885, 991
Mox20I	TGGCCA	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	386, 1070
MslI	CAYNNNNRTG	4 cut(s)	401, 699, 701, 1033
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	713
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	146, 407, 1013, 1017
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	5 cut(s)	116, 515, 555, 754, 1217
NlaIII	CATG	8 cut(s)	325, 400, 406, 565, 641, 1038, 1092, 1156
NlaIV	GGNNCC	2 cut(s)	79, 187
NmuCI	GTSAC	3 cut(s)	89, 296, 601
NspI	RCATGY	1 cut(s)	565
OliI	CACNNNNGTG	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	901
PagI	TCATGA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	919
PdmI	GAANNNNTTC	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	262, 283, 1096
PkrI	GCNGC	6 cut(s)	46, 292, 409, 412, 1114, 1143
PleI	GAGTC	3 cut(s)	298, 862, 955
PpsI	GAGTC	3 cut(s)	298, 862, 955
PshAI	GACNNNNGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	2 cut(s)	79, 187
PspPI	GGNCC	1 cut(s)	629
PspXI	VCTCGAGB	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	112, 542, 986, 1171
RsaNI	GTAC	4 cut(s)	111, 541, 985, 1170
RseI	CAYNNNNRTG	4 cut(s)	401, 699, 701, 1033
SaqAI	TTAA	2 cut(s)	386, 1070
SatI	GCNGC	6 cut(s)	45, 291, 408, 411, 1113, 1142
Sau3AI	GATC	5 cut(s)	116, 515, 555, 754, 1217
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	3 cut(s)	298, 863, 955
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	4 cut(s)	158, 351, 493, 1099
SfcI	CTRYAG	2 cut(s)	129, 408
Sfr274I	CTCGAG	1 cut(s)	901
SinI	GGWCC	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	901
SmiMI	CAYNNNNRTG	4 cut(s)	401, 699, 701, 1033
SmlI	CTYRAG	2 cut(s)	624, 901
SmoI	CTYRAG	2 cut(s)	624, 901
Sse9I	AATT	5 cut(s)	177, 418, 737, 831, 1063
SsiI	CCGC	4 cut(s)	45, 290, 1038, 1113
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	2 cut(s)	1106, 1228
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	2 cut(s)	402, 1192
TaaI	ACNGT	7 cut(s)	51, 67, 110, 130, 247, 601, 1169
TaiI	ACGT	2 cut(s)	214, 460
TaqI	TCGA	5 cut(s)	495, 501, 558, 648, 902
TasI	AATT	5 cut(s)	177, 418, 737, 831, 1063
TatI	WGTACW	2 cut(s)	540, 1169
TauI	GCSGC	3 cut(s)	47, 293, 1115
TfiI	GAWTC	3 cut(s)	262, 283, 1096
Tru1I	TTAA	2 cut(s)	386, 1070
Tru9I	TTAA	2 cut(s)	386, 1070
TscAI	CASTG	6 cut(s)	56, 133, 363, 604, 610, 982
TseFI	GTSAC	3 cut(s)	89, 296, 601
TseI	GCWGC	3 cut(s)	407, 410, 1141
Tsp45I	GTSAC	3 cut(s)	89, 296, 601
TspDTI	ATGAA	4 cut(s)	385, 657, 1092, 1141
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	6 cut(s)	56, 133, 363, 604, 610, 982
VpaK11BI	GGWCC	1 cut(s)	629
XbaI	TCTAGA	1 cut(s)	1105
XceI	RCATGY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	901
XmiI	GTMKAC	3 cut(s)	206, 1158, 1213
XmnI	GAANNNNTTC	1 cut(s)	670
XspI	CTAG	2 cut(s)	1106, 1228
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.