Rroxscaffold_2G00110870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0025489
Physical Location & Seq
Reverse (-)
35380777 .. 35384106
3330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110870.1

Sequence Viewer

Length: 342 bp
ATGTATAGGAGTCGATTTGGAGGAGTTGGAGCGCACGGTGGAGGTGGTGGTGCGGAGAAGATTGTTGAACGATTGACCGCACGGTGTTTGTTTTCGACGGCGGAGGCCAAAGCCGACCTCGGTCACGGGGACAACGACGGCGATCGGGATCGAAGGCATCGTAGTTGGTGCATTGAACGCTCCCGATACCGCAAAGCGATGCAAATCAATTTTGGGGCCCGAGCATTTTTCGGCCTAAACCTCGAAAGCGGAAAAGGTGGCACGTGCCACCAATTCGACCACCCATTTGGGCTGCAAGACTTGTACAAAAATGTTTCTTACATCAACCCCAACCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

9.4

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025489)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000760.1_g000017
rosa_roxburghii Rroxscaffold_2G00110870
rosa_samantha Rh2AG424600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 53, 78, 101, 190, 249
AclWI GGATC 1 cut(s) 156
AcvI CACGTG 1 cut(s) 264
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 2 cut(s) 68, 176
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 3 cut(s) 105, 216, 232
ApaI GGGCCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 216, 217
AvaI CYCGRG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 264
BbvI GCAGC 1 cut(s) 279
BceAI ACGGC 2 cut(s) 114, 154
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 216, 217
BmiI GGNNCC 2 cut(s) 217, 218
BmsI GCATC 2 cut(s) 166, 189
BoxI GACNNNNGTC 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 264
BsaBI GATNNNNATC 2 cut(s) 147, 203
BsaJI CCNNGG 1 cut(s) 118
Bse8I GATNNNNATC 2 cut(s) 147, 203
BseDI CCNNGG 1 cut(s) 118
BseJI GATNNNNATC 2 cut(s) 147, 203
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 107, 218, 234
BsiEI CGRYCG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 107, 218, 234
BsoBI CYCGRG 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 142, 148
BspACI CCGC 5 cut(s) 53, 78, 101, 190, 249
BspANI GGCC 3 cut(s) 107, 218, 234
BspLI GGNNCC 2 cut(s) 217, 218
BspPI GGATC 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 142, 148
Bst4CI ACNGT 2 cut(s) 38, 84
BstAUI TGTACA 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 264
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 145, 151
BstMBI GATC 2 cut(s) 142, 148
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstPAI GACNNNNGTC 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 107, 218, 234
BtgZI GCGATG 1 cut(s) 212
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 216, 217
Csp6I GTAC 1 cut(s) 304
CviJI RGCY 5 cut(s) 107, 113, 218, 234, 292
CviKI_1 RGCY 5 cut(s) 107, 113, 218, 234, 292
CviQI GTAC 1 cut(s) 304
DpnI GATC 2 cut(s) 144, 150
DpnII GATC 2 cut(s) 142, 148
EciI GGCGGA 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 220
FaiI YATR 1 cut(s) 6
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 293
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 3 cut(s) 107, 218, 234
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 146, 183
Hpy99I CGWCG 2 cut(s) 100, 140
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 38, 84
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 171, 202, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 263
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 2 cut(s) 142, 148
LmnI GCTCC 2 cut(s) 29, 185
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 2 cut(s) 166, 189
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 144, 150
MboI GATC 2 cut(s) 142, 148
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 208, 272
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 5 cut(s) 14, 35, 97, 128, 251
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 2 cut(s) 142, 148
NlaIV GGNNCC 2 cut(s) 217, 218
NmuCI GTSAC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 157
PkrI GCNGC 1 cut(s) 294
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 264
PmlI CACGTG 1 cut(s) 264
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 120
PspCI CACGTG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 217, 218
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 216, 217
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 142, 148
Sau96I GGNCC 2 cut(s) 216, 217
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 46, 120, 243, 259, 266
SfaNI GCATC 2 cut(s) 166, 189
Sse9I AATT 2 cut(s) 208, 272
SsiI CCGC 5 cut(s) 53, 78, 101, 190, 249
TaaI ACNGT 2 cut(s) 38, 84
TaiI ACGT 1 cut(s) 266
TaqI TCGA 5 cut(s) 13, 95, 151, 243, 276
TaqII GACCGA 1 cut(s) 110
TasI AATT 2 cut(s) 208, 272
TatI WGTACW 1 cut(s) 303
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.