Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0025490

Physical Location & Seq

Genomic Coordinates Forward (+)

318043 .. 320196

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggatttgagatctggatttgggatctgcaatttgagatctggaattctgggctttgcttggcttgagggaatgaaaggaaaggtaggattaccagggaattactttgtggtcaaaattccagccattggacttggaacatggcagagtggtggagatttgtgtttaagctgtgaaaacagcattatcagtagaaagagaagccattggagacctcgctggactcctgtgaccagtgaccggaatccggctacaggaccgagtataacggcgaacccccatttcttcaagcttaaacctttcaagcctcacaagcttaacccactcagagcttcctacgacgataatgggagcattgaagaacccaagaatcttggtcaccatggccggaaaaagaccccaacttccgcttcaacttcaccaccgaagaaagcccagcgctccaaaaaagctcaagttgaaaatggcccgatagaactagaacccgaatcttcagatccggaactcatagattacgacgacggcatcgatctcctgtacgattacctgcgcttggtctgctacttcaaggcagcccagaaagagttcgtcccgaaggttcgggtctctgacaacccgatggacccggacatgtataaccagtggaagatgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

218

Amino Acids

24.47

Weight (kDa)

9.2

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025490)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000762.1_g000084
rosa_samantha	Rh3BG160000 Rh7BG231600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	2 cut(s)	32, 491
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	45, 117
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	539
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	5 cut(s)	128, 240, 247, 254, 553
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	289, 304, 359, 414, 461, 568
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	5 cut(s)	171, 292, 316, 332, 452
AluI	AGCT	5 cut(s)	171, 292, 316, 332, 452
Alw26I	GTCTC	2 cut(s)	205, 610
AlwI	GGATC	2 cut(s)	32, 491
Aor13HI	TCCGGA	1 cut(s)	499
Aor51HI	AGCGCT	1 cut(s)	440
AoxI	GGCC	2 cut(s)	385, 466
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	45, 117
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	441, 552
AspS9I	GGNCC	3 cut(s)	257, 467, 622
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	371, 411
AvaII	GGWCC	2 cut(s)	257, 622
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	2 cut(s)	285, 538
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	2 cut(s)	205, 610
BfaI	CTAG	2 cut(s)	479, 655
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	555
BglII	AGATCT	2 cut(s)	11, 38
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	96, 626
Bme18I	GGWCC	2 cut(s)	257, 622
BmgT120I	GGNCC	3 cut(s)	257, 467, 622
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	2 cut(s)	96, 626
BmsI	GCATC	2 cut(s)	534, 639
BpuEI	CTTGAG	2 cut(s)	86, 438
BpuMI	CCSGG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	528
BsaI	GGTCTC	2 cut(s)	205, 610
BsaJI	CCNNGG	2 cut(s)	95, 382
BsaWI	WCCGGW	2 cut(s)	240, 499
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 240, 247, 254, 553
Bse1I	ACTGG	2 cut(s)	234, 640
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	95, 382
BseLI	CCNNNNNNNGG	5 cut(s)	128, 240, 247, 254, 553
BseMII	CTCAG	1 cut(s)	340
BseNI	ACTGG	2 cut(s)	234, 640
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	2 cut(s)	387, 468
BshVI	ATCGAT	1 cut(s)	528
BsiSI	CCGG	5 cut(s)	241, 248, 388, 500, 626
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	5 cut(s)	128, 240, 247, 254, 553
BsmAI	GTCTC	2 cut(s)	205, 610
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	387, 468
Bso31I	GGTCTC	2 cut(s)	205, 610
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	5 cut(s)	11, 24, 38, 496, 529
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	2 cut(s)	387, 468
BspCNI	CTCAG	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	528
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	32, 491
BspTNI	GGTCTC	2 cut(s)	205, 610
BsrI	ACTGG	2 cut(s)	234, 640
BssECI	CCNNGG	2 cut(s)	95, 382
BssMI	GATC	5 cut(s)	11, 24, 38, 496, 529
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	441, 552
BstKTI	GATC	5 cut(s)	14, 27, 41, 499, 532
BstMAI	GTCTC	2 cut(s)	205, 610
BstMBI	GATC	5 cut(s)	11, 24, 38, 496, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 558
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	94, 624
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	4 cut(s)	11, 24, 38, 496
BstYI	RGATCY	4 cut(s)	11, 24, 38, 496
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	387, 468
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	241, 647
BveI	ACCTGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	441, 552
Cfr13I	GGNCC	3 cut(s)	257, 467, 622
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	141, 383, 631
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	5 cut(s)	13, 26, 40, 498, 531
DpnII	GATC	5 cut(s)	11, 24, 38, 496, 529
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	382
Eco31I	GGTCTC	2 cut(s)	205, 610
Eco47I	GGWCC	2 cut(s)	257, 622
Eco47III	AGCGCT	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	144, 386, 634
FaiI	YATR	6 cut(s)	142, 266, 384, 509, 632, 636
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	140, 382, 630
Fnu4HI	GCNGC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	2 cut(s)	479, 655
GlaI	GCGC	2 cut(s)	440, 551
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	2 cut(s)	387, 468
HapII	CCGG	5 cut(s)	241, 248, 388, 500, 626
HhaI	GCGC	2 cut(s)	441, 552
Hin1II	CATG	3 cut(s)	144, 386, 634
Hin6I	GCGC	2 cut(s)	439, 550
HinP1I	GCGC	2 cut(s)	439, 550
HindIII	AAGCTT	2 cut(s)	290, 314
HinfI	GANTC	4 cut(s)	223, 244, 370, 488
HpaII	CCGG	5 cut(s)	241, 248, 388, 500, 626
HphI	GGTGA	2 cut(s)	371, 411
Hpy188I	TCNGA	3 cut(s)	329, 496, 610
Hpy188III	TCNNGA	4 cut(s)	15, 42, 500, 592
Hpy99I	CGWCG	3 cut(s)	344, 521, 524
HpyAV	CCTTC	1 cut(s)	589
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 558
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	144, 386, 634
HspAI	GCGC	2 cut(s)	439, 550
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	11, 24, 38, 496, 529
LmnI	GCTCC	2 cut(s)	351, 446
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	534, 639
MaeI	CTAG	2 cut(s)	479, 655
MaeIII	GTNAC	3 cut(s)	229, 236, 377
MalI	GATC	5 cut(s)	13, 26, 40, 498, 531
MboI	GATC	5 cut(s)	11, 24, 38, 496, 529
MboII	GAAGA	4 cut(s)	277, 371, 439, 483
MflI	RGATCY	4 cut(s)	11, 24, 38, 496
MluCI	AATT	4 cut(s)	31, 45, 100, 117
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	61, 225, 318
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	3 cut(s)	167, 294, 318
MspI	CCGG	5 cut(s)	241, 248, 388, 500, 626
MspR9I	CCNGG	2 cut(s)	96, 626
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	313, 558
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	5 cut(s)	11, 24, 38, 496, 529
NlaIII	CATG	3 cut(s)	144, 386, 634
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	3 cut(s)	229, 236, 377
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	244, 370, 488
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	3 cut(s)	257, 467, 622
PsuI	RGATCY	4 cut(s)	11, 24, 38, 496
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	167, 294, 318
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	5 cut(s)	11, 24, 38, 496, 529
Sau96I	GGNCC	3 cut(s)	257, 467, 622
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	96, 626
SfaNI	GCATC	2 cut(s)	534, 639
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	257, 622
SmlI	CTYRAG	2 cut(s)	65, 453
SmoI	CTYRAG	2 cut(s)	65, 453
Sse9I	AATT	4 cut(s)	31, 45, 100, 117
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	2 cut(s)	479, 655
StyD4I	CCNGG	2 cut(s)	94, 624
StyI	CCWWGG	1 cut(s)	382
TaqI	TCGA	1 cut(s)	528
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	4 cut(s)	31, 45, 100, 117
TfiI	GAWTC	3 cut(s)	244, 370, 488
Tru1I	TTAA	3 cut(s)	167, 294, 318
Tru9I	TTAA	3 cut(s)	167, 294, 318
TscAI	CASTG	2 cut(s)	241, 647
TseFI	GTSAC	3 cut(s)	229, 236, 377
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	3 cut(s)	229, 236, 377
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	241, 647
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	257, 622
XapI	RAATTY	2 cut(s)	45, 117
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	479, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.