Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0025490

Physical Location & Seq

Genomic Coordinates Forward (+)

20258135 .. 20270201

Gene Structure 12067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAATTTGACTTTAGGTGGGAGTCTCACTTTCCAGAGTGTTCTCCAAAATTGATCAGCTCTAACAGTATAACCGCGAACCCCCATTTCTTTAAGCTTAAACCTTTCAAGCCTCACAAGCTGAACCCACTCAGAGCTTCCGGCGAAGATAATGGGAGCATTGAAGAACCTAAGAAGCCTGGTCGCCGTGGCCGGAAAAAGACCCCAACTTCCGCTTCAACTTCACCACCGAAGAAAACCCAGCGCTCCAAAAAAGCCCAAGTTAAAAATGGCCCGATAGAACTAGAACCCGAATCTTCATATCCGGAGCTCGAATATTACGACGACGGCATCGATTTCTTGTACGACTACCCGCCCTTGGTCTGCTGCTTCGGGGCAGCCCAGAAAGAGTTCGTCCCGACGGTTTGGGTCTCTGACAACCCGATGGACCCGGACATGTACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

148

Amino Acids

16.9

Weight (kDa)

7.68

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025490)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000762.1_g000084
rosa_samantha	Rh3BG160000 Rh7BG231600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	3 cut(s)	75, 213, 353
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	2 cut(s)	344, 440
AfeI	AGCGCT	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	109, 164, 219
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	5 cut(s)	60, 97, 121, 137, 310
AluI	AGCT	5 cut(s)	60, 97, 121, 137, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	30, 415
Aor13HI	TCCGGA	1 cut(s)	304
Aor51HI	AGCGCT	1 cut(s)	245
AoxI	GGCC	2 cut(s)	190, 271
ApeKI	GCWGC	2 cut(s)	366, 377
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	272, 427
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	353, 389
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	2 cut(s)	171, 343
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	30, 415
BfaI	CTAG	2 cut(s)	284, 445
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	2 cut(s)	367, 378
BlsI	GCNGC	2 cut(s)	368, 379
Bme1390I	CCNGG	2 cut(s)	180, 431
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	272, 427
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	180, 431
BmsI	GCATC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	187, 357
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	187, 357
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	353, 389
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	192, 273
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	4 cut(s)	141, 193, 305, 431
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	30, 415
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	192, 273
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	75, 213, 353
BspANI	GGCC	2 cut(s)	192, 273
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	187, 357
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	68, 403
BstAUI	TGTACA	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	131, 171
BstDSI	CCRYGG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	30, 415
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	178, 429
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	353, 389
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	192, 273
BsuTUI	ATCGAT	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	272, 427
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	343, 439
CviAII	CATG	1 cut(s)	436
CviQI	GTAC	2 cut(s)	343, 439
DdeI	CTNAG	2 cut(s)	131, 171
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	439
FaiI	YATR	3 cut(s)	71, 301, 437
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	435
FauI	CCCGC	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	367, 378
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	367, 378
FspBI	CTAG	2 cut(s)	284, 445
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	367, 378
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	192, 273
HapII	CCGG	4 cut(s)	141, 193, 305, 431
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	439
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	23, 293
HpaII	CCGG	4 cut(s)	141, 193, 305, 431
HphI	GGTGA	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	134, 415
Hpy188III	TCNNGA	3 cut(s)	35, 305, 397
Hpy99I	CGWCG	3 cut(s)	326, 329, 403
HpyCH4III	ACNGT	2 cut(s)	68, 403
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	2 cut(s)	131, 171
Hsp92II	CATG	1 cut(s)	439
HspAI	GCGC	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	156, 251, 307
LpnPI	CCDG	8 cut(s)	48, 154, 165, 192, 206, 254, 318, 395
Lsp1109I	GCAGC	2 cut(s)	353, 389
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	2 cut(s)	284, 445
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	4 cut(s)	158, 176, 244, 288
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	5, 50
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	93, 99, 264
MspI	CCGG	4 cut(s)	141, 193, 305, 431
MspR9I	CCNGG	2 cut(s)	180, 431
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	439
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 330
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	368, 379
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	272, 427
RsaI	GTAC	2 cut(s)	344, 440
RsaNI	GTAC	2 cut(s)	343, 439
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	93, 99, 264
SatI	GCNGC	2 cut(s)	367, 378
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	272, 427
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	180, 431
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	20, 62, 99, 106, 123, 139, 172, 312
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	427
Sse9I	AATT	2 cut(s)	5, 50
SsiI	CCGC	3 cut(s)	75, 213, 353
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	284, 445
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	178, 429
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	68, 403
TaqI	TCGA	2 cut(s)	312, 333
TasI	AATT	2 cut(s)	5, 50
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	93, 99, 264
Tru9I	TTAA	3 cut(s)	93, 99, 264
TseI	GCWGC	2 cut(s)	366, 377
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	427
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	2 cut(s)	284, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.