Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0025490

Physical Location & Seq

Genomic Coordinates Reverse (-)

13796496 .. 13811906

Gene Structure 15411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG160000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGAACTCGCCATCCAAATTCCGAACAACTTTGTCCGGCACCATCCTCTGATCGTCCTAGGCATATATGGTCCCCTGCATCTTATAGGGACTGAGACATCAGCATTGGCCATGGCAGCGTCTCTTGCCCTTCAATGGCCGGCAGATTGCTTGGTTGCTCCTAAACCCAAACGATGGCCTGCACTTCTTAGAGCATCTTGGAGTATAACCGCGAACCCCCATTTCTTCAAGCTTAAACCTTTCAAACCTCACAAGCTGAACCCACTCAGAGCTTTCGGCGAAGATAGTGGGAGCATTGAAGAACCTAAGAAGCCCGGTCGCCGTGGCAGGAAAAAGACCCCAACTTATGCTTCAACTTTACCATCGAAGAAAACCCAGTGCTCCAAAAAAGCCCAAGTTGAAAATGGCCCGGTAGAACTAGAACCCGAATCTTCAGATCCGAAACTCGTAGATTACGACGACGGCATCGATCTCTTGTATGACTACCTGCGCTTGGTCTGCTGCTTCAAGGCATCCAAGAAAGAGTTCGTCCCGAAGGTTCGGGTCTCTGAAAACCCGATGGACCCGGACATGTATAACCAGTGGAAGATGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

199

Amino Acids

22.42

Weight (kDa)

9.3

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025490)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000762.1_g000084
rosa_samantha	Rh3BG160000 Rh7BG231600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	5, 213
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	2 cut(s)	111, 140
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	138, 177, 496
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	7 cut(s)	137, 232, 247, 302, 357, 404, 511
AjuI	GAANNNNNNNTTGG	4 cut(s)	337, 369, 512, 544
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	3 cut(s)	235, 259, 275
AluI	AGCT	3 cut(s)	235, 259, 275
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	3 cut(s)	92, 129, 553
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	4 cut(s)	111, 140, 179, 409
ApeKI	GCWGC	2 cut(s)	119, 504
ApoI	RAATTY	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	527
AspA2I	CCTAGG	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	3 cut(s)	74, 410, 565
AsuC2I	CCSGG	3 cut(s)	318, 413, 569
AvaII	GGWCC	2 cut(s)	74, 565
AvrII	CCTAGG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	131, 491
BccI	CCATC	5 cut(s)	23, 54, 171, 373, 556
BceAI	ACGGC	2 cut(s)	309, 481
BcnI	CCSGG	3 cut(s)	318, 413, 569
BcoDI	GTCTC	3 cut(s)	92, 129, 553
BfaI	CTAG	3 cut(s)	62, 422, 598
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	2 cut(s)	120, 505
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	2 cut(s)	121, 506
Bme1390I	CCNGG	3 cut(s)	318, 413, 569
Bme18I	GGWCC	2 cut(s)	74, 565
BmgT120I	GGNCC	3 cut(s)	74, 410, 565
BmiI	GGNNCC	3 cut(s)	44, 76, 567
BmrFI	CCNGG	3 cut(s)	318, 413, 569
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	91, 206, 477, 524, 582
BmuI	ACTGGG	1 cut(s)	373
BpuMI	CCSGG	3 cut(s)	318, 413, 569
Bsa29I	ATCGAT	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	61, 114, 325
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 177, 496
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	379, 583
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	61, 114, 325
BseGI	GGATG	3 cut(s)	15, 46, 515
BseLI	CCNNNNNNNGG	3 cut(s)	138, 177, 496
BseMII	CTCAG	2 cut(s)	87, 283
BseNI	ACTGG	2 cut(s)	379, 583
BseXI	GCAGC	2 cut(s)	131, 491
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	113, 142, 181, 411
BshNI	GGYRCC	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	5 cut(s)	40, 143, 318, 413, 569
BslFI	GGGAC	3 cut(s)	60, 106, 518
BslI	CCNNNNNNNGG	3 cut(s)	138, 177, 496
BsmAI	GTCTC	3 cut(s)	92, 129, 553
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	3 cut(s)	60, 106, 518
BsnI	GGCC	4 cut(s)	113, 142, 181, 411
Bso31I	GGTCTC	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	54, 439, 472
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	5, 213
BspANI	GGCC	4 cut(s)	113, 142, 181, 411
BspCNI	CTCAG	2 cut(s)	88, 282
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	3 cut(s)	44, 76, 567
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	379, 583
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	61, 114, 325
BssMI	GATC	3 cut(s)	54, 439, 472
BssT1I	CCWWGG	2 cut(s)	61, 114
BstC8I	GCNNGC	2 cut(s)	144, 183
BstDEI	CTNAG	4 cut(s)	96, 191, 269, 309
BstDSI	CCRYGG	2 cut(s)	114, 325
BstF5I	GGATG	3 cut(s)	15, 46, 515
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	57, 442, 475
BstMAI	GTCTC	3 cut(s)	92, 129, 553
BstMBI	GATC	3 cut(s)	54, 439, 472
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 119, 128, 501
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	3 cut(s)	316, 411, 567
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	131, 491
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	4 cut(s)	113, 142, 181, 411
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	114, 325
BtsCI	GGATG	3 cut(s)	15, 46, 515
BtsIMutI	CAGTG	2 cut(s)	386, 590
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	144, 183
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	74, 410, 565
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	111
CviAII	CATG	2 cut(s)	115, 574
CviJI	RGCY	9 cut(s)	113, 142, 181, 235, 259, 275, 316, 395, 411
CviKI_1	RGCY	9 cut(s)	113, 142, 181, 235, 259, 275, 316, 395, 411
DdeI	CTNAG	4 cut(s)	96, 191, 269, 309
DpnI	GATC	3 cut(s)	56, 441, 474
DpnII	GATC	3 cut(s)	54, 439, 472
EaeI	YGGCCR	2 cut(s)	111, 140
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	61, 114
Eco31I	GGTCTC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	74, 565
Eco57I	CTGAAG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	61, 114
ErhI	CCWWGG	2 cut(s)	61, 114
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	2 cut(s)	118, 577
FaqI	GGGAC	3 cut(s)	60, 106, 518
FatI	CATG	2 cut(s)	114, 573
Fnu4HI	GCNGC	2 cut(s)	120, 505
FokI	GGATG	3 cut(s)	2, 33, 502
Fsp4HI	GCNGC	2 cut(s)	120, 505
FspBI	CTAG	3 cut(s)	62, 422, 598
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	120, 505
HaeIII	GGCC	4 cut(s)	113, 142, 181, 411
HapII	CCGG	5 cut(s)	40, 143, 318, 413, 569
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	118, 577
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	5 cut(s)	40, 143, 318, 413, 569
Hpy188I	TCNGA	6 cut(s)	27, 54, 272, 439, 444, 553
Hpy188III	TCNNGA	1 cut(s)	535
Hpy99I	CGWCG	2 cut(s)	464, 467
HpyAV	CCTTC	2 cut(s)	143, 532
HpyCH4V	TGCA	2 cut(s)	82, 185
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 119, 128, 501
HpyF3I	CTNAG	4 cut(s)	96, 191, 269, 309
Hsp92II	CATG	2 cut(s)	118, 577
HspAI	GCGC	1 cut(s)	493
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	54, 439, 472
LmnI	GCTCC	3 cut(s)	166, 294, 389
Lsp1109I	GCAGC	2 cut(s)	131, 491
LweI	GCATC	5 cut(s)	91, 206, 477, 524, 582
MaeI	CTAG	3 cut(s)	62, 422, 598
MalI	GATC	3 cut(s)	56, 441, 474
MboI	GATC	3 cut(s)	54, 439, 472
MboII	GAAGA	5 cut(s)	220, 296, 314, 382, 426
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	2 cut(s)	60, 261
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	5 cut(s)	40, 143, 318, 413, 569
MspR9I	CCNGG	3 cut(s)	318, 413, 569
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	11, 119, 128, 501
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	3 cut(s)	318, 413, 569
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	54, 439, 472
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	118, 577
NlaIV	GGNNCC	3 cut(s)	44, 76, 567
NspI	RCATGY	1 cut(s)	577
PciI	ACATGT	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	456, 468
PdiI	GCCGGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	121, 506
PscI	ACATGT	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	44, 76, 567
PspPI	GGNCC	3 cut(s)	74, 410, 565
PsuI	RGATCY	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	120, 505
Sau3AI	GATC	3 cut(s)	54, 439, 472
Sau96I	GGNCC	3 cut(s)	74, 410, 565
ScrFI	CCNGG	3 cut(s)	318, 413, 569
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	8 cut(s)	237, 244, 253, 261, 277, 310, 492, 543
SfaNI	GCATC	5 cut(s)	91, 206, 477, 524, 582
SinI	GGWCC	2 cut(s)	74, 565
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	2 cut(s)	5, 213
SspMI	CTAG	3 cut(s)	62, 422, 598
StyD4I	CCNGG	3 cut(s)	316, 411, 567
StyI	CCWWGG	2 cut(s)	61, 114
TaqI	TCGA	2 cut(s)	368, 471
TasI	AATT	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	386, 590
TseI	GCWGC	2 cut(s)	119, 504
TspRI	CASTG	2 cut(s)	386, 590
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	74, 565
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	62, 422, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.