Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000784.1

Orthogroup ID

OG0024005

Physical Location & Seq

Genomic Coordinates Forward (+)

120770 .. 121219

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcaggccccgaaccgagatccaacggcggaggacgactctcagtccgccgcgcggcgcatccaacggctgtccctccacctgacgccggccgcggtttcaccggacgaccaccgccaaatctcgaggctggagtgcgccaaggcggcggcgaagctcaacgtggacacgaagagtctgtcgagctacatgagaggaaagcacagggaaatccaagataaggttatggactacttcaacaacaggcctgaccttcagactccggtggagattttgaaggacgatcaccgcgagctttgtatgaggcagcttactggtttggttagggaggccggaatcagaccgttccggtacgtcgtcgaagatccggccaagtactttgcggttctggaagccgtgggcggcgtcgacatgtcgcttgggatcaagatgggggtgcagtacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

149

Amino Acids

16.9

Weight (kDa)

8.58

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27611
rosa_multiflora	Rmu_co8098978.1_g000001 Rmu_sc0000784.1_g000028

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	4 cut(s)	53, 55, 95, 291
AclWI	GGATC	3 cut(s)	14, 359, 431
AcoI	YGGCCR	2 cut(s)	90, 369
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	2 cut(s)	86, 405
AfaI	GTAC	3 cut(s)	353, 377, 443
AfiI	CCNNNNNNNGG	3 cut(s)	54, 88, 220
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	238, 277
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	4 cut(s)	157, 186, 295, 310
AluI	AGCT	4 cut(s)	157, 186, 295, 310
AlwI	GGATC	3 cut(s)	14, 359, 431
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	5 cut(s)	6, 90, 245, 330, 369
ApeKI	GCWGC	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	3 cut(s)	55, 60, 140
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	93, 278
AvaI	CYCGRG	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	3 cut(s)	42, 83, 380
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	7 cut(s)	51, 56, 93, 147, 150, 308, 403
BlsI	GCNGC	7 cut(s)	52, 57, 94, 148, 151, 309, 404
BmcAI	AGTACT	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	86, 405
BsaJI	CCNNGG	3 cut(s)	93, 141, 396
BsaWI	WCCGGW	3 cut(s)	103, 262, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 88, 220
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	93, 141, 396
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	54, 88, 220
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	319
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	4 cut(s)	53, 55, 95, 291
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	5 cut(s)	8, 92, 247, 332, 371
BsiEI	CGRYCG	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	6 cut(s)	89, 104, 263, 333, 349, 368
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	54, 88, 220
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	5 cut(s)	8, 92, 247, 332, 371
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	19, 283, 364, 423
BspANI	GGCC	5 cut(s)	8, 92, 247, 332, 371
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	4 cut(s)	53, 55, 95, 291
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	14, 359, 431
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	93, 141, 396
BssMI	GATC	4 cut(s)	19, 283, 364, 423
BssNI	GRCGYC	2 cut(s)	86, 405
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	2 cut(s)	86, 405
BstC8I	GCNNGC	3 cut(s)	6, 90, 293
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	2 cut(s)	93, 396
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	4 cut(s)	53, 55, 95, 291
BstHHI	GCGC	3 cut(s)	55, 60, 140
BstKTI	GATC	4 cut(s)	22, 286, 367, 426
BstMBI	GATC	4 cut(s)	19, 283, 364, 423
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	415
BstUI	CGCG	4 cut(s)	53, 55, 95, 291
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	19, 364
BstYI	RGATCY	2 cut(s)	19, 364
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	5 cut(s)	8, 92, 247, 332, 371
BtgI	CCRYGG	2 cut(s)	93, 396
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	6, 90, 293
CfoI	GCGC	3 cut(s)	55, 60, 140
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	7
Cfr42I	CCGCGG	1 cut(s)	96
CseI	GACGC	2 cut(s)	94, 394
Csp6I	GTAC	3 cut(s)	352, 376, 442
CviAII	CATG	2 cut(s)	190, 412
CviQI	GTAC	3 cut(s)	352, 376, 442
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	4 cut(s)	21, 285, 366, 425
DpnII	GATC	4 cut(s)	19, 283, 364, 423
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	2 cut(s)	90, 369
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	2 cut(s)	37, 44
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	193, 415
FaiI	YATR	4 cut(s)	191, 227, 302, 413
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	189, 411
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	7 cut(s)	51, 56, 93, 147, 150, 308, 403
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	7 cut(s)	51, 56, 93, 147, 150, 308, 403
GlaI	GCGC	3 cut(s)	54, 59, 139
GluI	GCNGC	7 cut(s)	51, 56, 93, 147, 150, 308, 403
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	5 cut(s)	8, 92, 247, 332, 371
HapII	CCGG	6 cut(s)	89, 104, 263, 333, 349, 368
HgaI	GACGC	2 cut(s)	94, 394
HhaI	GCGC	3 cut(s)	55, 60, 140
Hin1I	GRCGYC	2 cut(s)	86, 405
Hin1II	CATG	2 cut(s)	193, 415
Hin6I	GCGC	3 cut(s)	53, 58, 138
HinP1I	GCGC	3 cut(s)	53, 58, 138
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	4 cut(s)	38, 175, 259, 336
HpaII	CCGG	6 cut(s)	89, 104, 263, 333, 349, 368
HphI	GGTGA	2 cut(s)	93, 278
Hpy166II	GTNNAC	2 cut(s)	166, 409
Hpy188I	TCNGA	2 cut(s)	258, 341
Hpy188III	TCNNGA	3 cut(s)	124, 389, 427
Hpy8I	GTNNAC	2 cut(s)	166, 409
Hpy99I	CGWCG	3 cut(s)	359, 362, 410
HpyAV	CCTTC	2 cut(s)	263, 271
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	2 cut(s)	162, 354
HpyCH4V	TGCA	2 cut(s)	4, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	162, 354
Hsp92I	GRCGYC	2 cut(s)	86, 405
Hsp92II	CATG	2 cut(s)	193, 415
HspAI	GCGC	3 cut(s)	53, 58, 138
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	19, 283, 364, 423
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	2 cut(s)	162, 354
MalI	GATC	4 cut(s)	21, 285, 366, 425
MboI	GATC	4 cut(s)	19, 283, 364, 423
MboII	GAAGA	2 cut(s)	184, 374
MflI	RGATCY	2 cut(s)	19, 364
MlyI	GAGTC	3 cut(s)	32, 184, 253
MmeI	TCCRAC	2 cut(s)	47, 88
MnlI	CCTC	6 cut(s)	25, 86, 120, 188, 297, 322
MroNI	GCCGGC	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	6 cut(s)	89, 104, 263, 333, 349, 368
MteI	GCGCNGCGC	1 cut(s)	56
MvnI	CGCG	4 cut(s)	53, 55, 95, 291
MwoI	GCNNNNNNNGC	1 cut(s)	146
NaeI	GCCGGC	1 cut(s)	90
NdeII	GATC	4 cut(s)	19, 283, 364, 423
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	193, 415
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	247
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	7 cut(s)	52, 57, 94, 148, 151, 309, 404
PleI	GAGTC	3 cut(s)	32, 183, 253
PpsI	GAGTC	3 cut(s)	32, 183, 253
PscI	ACATGT	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	19, 364
RsaI	GTAC	3 cut(s)	353, 377, 443
RsaNI	GTAC	3 cut(s)	352, 376, 442
SacII	CCGCGG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	407
SatI	GCNGC	7 cut(s)	51, 56, 93, 147, 150, 308, 403
Sau3AI	GATC	4 cut(s)	19, 283, 364, 423
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	3 cut(s)	32, 184, 253
SfaNI	GCATC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SseBI	AGGCCT	1 cut(s)	247
StuI	AGGCCT	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	2 cut(s)	165, 357
TaqI	TCGA	4 cut(s)	125, 182, 360, 408
TatI	WGTACW	2 cut(s)	375, 441
TauI	GCSGC	6 cut(s)	53, 58, 95, 149, 152, 405
TfiI	GAWTC	1 cut(s)	336
TseI	GCWGC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.