Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0031097

Physical Location & Seq

Genomic Coordinates Forward (+)

117657 .. 118179

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggaagcagcaaagcaaacagatttagcatgcatttcagaaggtgaaggatcatcatgtgtagaacaacatgccaacattgaagccgcaccgattgtgtcatcctacaatgataaaatccgtcctctccttggcgccgttgacaagctctggagcctgatcatgtcaatacatcagattatcaagaagatgggagcatcaaagcaaacagatttagcatgcatttcagaaggtgaaggatcatcatgtgtaaagcaacatgccatcattgaagcagcaccaattgtgtcatcctacaatgacaaaatccgtcctctccttgacgccattgacaagctcaggagcctcatggttatggaggaaggcattcagctccccaccattgttgttgtaggtgaccacaatcggtgcggcttcaatgttggcatgttgttctacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

147

Amino Acids

15.93

Weight (kDa)

5.29

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031097)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000795.1_g000029 Rmu_sc0004192.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	87, 411
AclWI	GGATC	2 cut(s)	58, 247
AcyI	GRCGYC	2 cut(s)	135, 324
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	83, 272, 418
AluBI	AGCT	3 cut(s)	148, 337, 373
AluI	AGCT	3 cut(s)	148, 337, 373
AlwI	GGATC	2 cut(s)	58, 247
ApeKI	GCWGC	2 cut(s)	8, 275
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	56, 245, 407
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	20, 287
BccI	CCATC	2 cut(s)	184, 272
BceAI	ACGGC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	4 cut(s)	9, 87, 276, 412
BlsI	GCNGC	4 cut(s)	10, 88, 277, 413
BmiI	GGNNCC	3 cut(s)	136, 155, 344
BmsI	GCATC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	135, 324
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	101, 290
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	20, 287
BshNI	GGYRCC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	50, 159, 239
BspACI	CCGC	2 cut(s)	87, 411
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	136, 155, 344
BspPI	GGATC	2 cut(s)	58, 247
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	3 cut(s)	50, 159, 239
BssNI	GRCGYC	2 cut(s)	135, 324
BssT1I	CCWWGG	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	135, 324
BstC8I	GCNNGC	2 cut(s)	31, 220
BstDEI	CTNAG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	101, 290
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	53, 162, 242
BstMBI	GATC	3 cut(s)	50, 159, 239
BstNSI	RCATGY	5 cut(s)	33, 74, 222, 263, 430
BstPI	GGTNACC	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	20, 287
BtsCI	GGATG	2 cut(s)	101, 290
Cac8I	GCNNGC	2 cut(s)	31, 220
CfoI	GCGC	1 cut(s)	137
CseI	GACGC	1 cut(s)	332
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviJI	RGCY	7 cut(s)	86, 148, 156, 337, 345, 373, 414
CviKI_1	RGCY	7 cut(s)	86, 148, 156, 337, 345, 373, 414
DdeI	CTNAG	1 cut(s)	338
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	3 cut(s)	52, 161, 241
DpnII	GATC	3 cut(s)	50, 159, 239
Eco130I	CCWWGG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	2 cut(s)	35, 224
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	9, 87, 276, 412
FokI	GGATG	2 cut(s)	88, 277
Fsp4HI	GCNGC	4 cut(s)	9, 87, 276, 412
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	9, 87, 276, 412
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	138
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	135, 324
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HphI	GGTGA	3 cut(s)	56, 245, 407
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	40, 177, 229
Hpy188III	TCNNGA	3 cut(s)	151, 184, 340
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	35, 41, 224, 230, 356
HpyCH4V	TGCA	2 cut(s)	33, 222
HpyF3I	CTNAG	1 cut(s)	338
Hsp92I	GRCGYC	2 cut(s)	135, 324
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	50, 159, 239
LmnI	GCTCC	4 cut(s)	153, 194, 342, 378
LpnPI	CCDG	3 cut(s)	136, 170, 325
Lsp1109I	GCAGC	2 cut(s)	20, 287
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	52, 161, 241
MboI	GATC	3 cut(s)	50, 159, 239
MboII	GAAGA	1 cut(s)	199
MfeI	CAATTG	1 cut(s)	282
MluCI	AATT	1 cut(s)	282
Mly113I	GGCGCC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	135, 324, 352, 356
Mph1103I	ATGCAT	2 cut(s)	35, 224
MroXI	GAANNNNTTC	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	366
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	3 cut(s)	50, 159, 239
NlaIV	GGNNCC	3 cut(s)	136, 155, 344
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	2 cut(s)	35, 224
NspI	RCATGY	5 cut(s)	33, 74, 222, 263, 430
PaeI	GCATGC	2 cut(s)	33, 222
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	10, 88, 277, 413
PluTI	GGCGCC	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	136, 155, 344
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	4 cut(s)	9, 87, 276, 412
Sau3AI	GATC	3 cut(s)	50, 159, 239
SetI	ASST	6 cut(s)	46, 150, 235, 339, 375, 397
SfaNI	GCATC	1 cut(s)	206
SfoI	GGCGCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	353
SphI	GCATGC	2 cut(s)	33, 222
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	87, 411
SspDI	GGCGCC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	130
TasI	AATT	1 cut(s)	282
TauI	GCSGC	2 cut(s)	89, 414
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	8, 275
Tsp45I	GTSAC	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	110, 299
XceI	RCATGY	5 cut(s)	33, 74, 222, 263, 430
XmnI	GAANNNNTTC	1 cut(s)	366
Zsp2I	ATGCAT	2 cut(s)	35, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.