Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004192.1

Orthogroup ID

OG0031097

Physical Location & Seq

Genomic Coordinates Reverse (-)

149544 .. 150064

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004192.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggagcagcaaggcaaacagatttagcatgcatttcagaaggtgaaggatcatcatgtgtagaacaatatgccatccttgaagcagcacctattgtgtcatcctacaatgacaaaatccgtcctctccttgacgccgttgacaagctcaggagcctcatggttatggaggaaggcattcagctccccaccattgttgttgtaggtgaccaatcatctggcaagtcaagcgtccttgaatccctggccggcatcagcctgccacgtggacaaggtatctgcaccagggtaccccttataatgaggcttcaacaccactctagtcctgaaccagagttccagctggagtacaatggcaaagttgagcacactgatgaggtcaacatagctgatgatattatcaatgccaccaatgctattgctgggggaggatggtgttccggatttgactatggtagatctccctggaatcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

158

Amino Acids

17.01

Weight (kDa)

4.68

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031097)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000795.1_g000029 Rmu_sc0004192.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	440
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	291, 350
AgsI	TTSAA	3 cut(s)	83, 239, 311
AjnI	CCWGG	3 cut(s)	243, 284, 464
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	4 cut(s)	148, 184, 343, 389
AluI	AGCT	4 cut(s)	148, 184, 343, 389
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	440
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	8, 86
Asp700I	GAANNNNTTC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	56, 218
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BanI	GGYRCC	1 cut(s)	289
BbrPI	CACGTG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	20, 98
BccI	CCATC	2 cut(s)	83, 426
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	3 cut(s)	245, 286, 466
BfaI	CTAG	2 cut(s)	321, 475
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	9, 87
BlsI	GCNGC	2 cut(s)	10, 88
Bme1390I	CCNGG	3 cut(s)	245, 286, 466
BmiI	GGNNCC	2 cut(s)	155, 291
BmrFI	CCNGG	3 cut(s)	245, 286, 466
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	243, 285, 464
BsaWI	WCCGGW	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	440
BseBI	CCWGG	3 cut(s)	245, 286, 466
BseDI	CCNNGG	3 cut(s)	243, 285, 464
BseGI	GGATG	3 cut(s)	75, 101, 437
BseMII	CTCAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	20, 98
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	249, 441
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	50, 458
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	155, 291
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	243, 285, 464
BssMI	GATC	2 cut(s)	50, 458
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	245, 286, 466
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	31, 250, 260
BstDEI	CTNAG	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	75, 101, 437
BstKTI	GATC	2 cut(s)	53, 461
BstMBI	GATC	2 cut(s)	50, 458
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 413
BstNI	CCWGG	3 cut(s)	245, 286, 466
BstNSI	RCATGY	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	243, 284, 464
BstV1I	GCAGC	2 cut(s)	20, 98
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	75, 101, 437
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	31, 250, 260
Cfr10I	RCCGGY	1 cut(s)	248
CseI	GACGC	2 cut(s)	143, 220
Csp6I	GTAC	2 cut(s)	290, 349
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	3 cut(s)	30, 57, 160
CviJI	RGCY	8 cut(s)	148, 156, 184, 248, 258, 307, 343, 389
CviKI_1	RGCY	8 cut(s)	148, 156, 184, 248, 258, 307, 343, 389
CviQI	GTAC	2 cut(s)	290, 349
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	2 cut(s)	52, 460
DpnII	GATC	2 cut(s)	50, 458
EaeI	YGGCCR	1 cut(s)	246
Eco72I	CACGTG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	243, 284, 464
EcoT22I	ATGCAT	1 cut(s)	35
FaeI	CATG	3 cut(s)	33, 60, 163
FaiI	YATR	8 cut(s)	31, 58, 72, 161, 167, 299, 386, 453
FatI	CATG	3 cut(s)	29, 56, 159
Fnu4HI	GCNGC	2 cut(s)	9, 87
FokI	GGATG	3 cut(s)	62, 88, 444
Fsp4HI	GCNGC	2 cut(s)	9, 87
FspBI	CTAG	2 cut(s)	321, 475
GluI	GCNGC	2 cut(s)	9, 87
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	249, 441
HgaI	GACGC	2 cut(s)	143, 220
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	33, 60, 163
HincII	GTYRAC	2 cut(s)	142, 382
HindII	GTYRAC	2 cut(s)	142, 382
HinfI	GANTC	2 cut(s)	239, 469
HpaII	CCGG	2 cut(s)	249, 441
HphI	GGTGA	2 cut(s)	56, 218
Hpy166II	GTNNAC	3 cut(s)	142, 269, 382
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	151, 326, 441
Hpy8I	GTNNAC	3 cut(s)	142, 269, 382
HpyAV	CCTTC	3 cut(s)	35, 41, 167
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	33, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 413
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	33, 60, 163
Kpn2I	TCCGGA	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	293
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	50, 458
LmnI	GCTCC	3 cut(s)	5, 153, 189
Lsp1109I	GCAGC	2 cut(s)	20, 98
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	321, 475
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	52, 460
MboI	GATC	2 cut(s)	50, 458
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	369
MnlI	CCTC	6 cut(s)	135, 163, 167, 297, 370, 422
Mph1103I	ATGCAT	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	440
MroNI	GCCGGC	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	164, 372
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	2 cut(s)	249, 441
MspR9I	CCNGG	3 cut(s)	245, 286, 466
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	3 cut(s)	245, 286, 466
MwoI	GCNNNNNNNGC	2 cut(s)	228, 413
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	50, 458
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	33, 60, 163
NlaIV	GGNNCC	2 cut(s)	155, 291
NmuCI	GTSAC	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	239, 469
PkrI	GCNGC	2 cut(s)	10, 88
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	243, 284, 464
PspCI	CACGTG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	243, 284, 464
PspN4I	GGNNCC	2 cut(s)	155, 291
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	2 cut(s)	291, 350
RsaNI	GTAC	2 cut(s)	290, 349
RseI	CAYNNNNRTG	2 cut(s)	164, 372
SatI	GCNGC	2 cut(s)	9, 87
Sau3AI	GATC	2 cut(s)	50, 458
ScrFI	CCNGG	3 cut(s)	245, 286, 466
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	164, 372
SphI	GCATGC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	321, 475
StyD4I	CCNGG	3 cut(s)	243, 284, 464
TaiI	ACGT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	239, 469
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	8, 86
Tsp45I	GTSAC	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	376
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	321, 475
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.