Rmu_sc0000828.1_g000013

Importin-beta N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000828.1
OG0025492
Physical Location & Seq
Reverse (-)
57830 .. 61111
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000828.1_g000013.1.cds

Sequence Viewer

Length: 597 bp
atgcagaagcgtcttaacgtcttgcttcgcatggcgaagaccgaagtcaaccgcacgtcgaagttctttttagactctcaccttgattacgtgtatacatggatggtgcaaattgcagagccggatgacgtggacgaaaccatccgacggctggcgctctccatcctgatcaagcttgataccatggaaactgccaacatgaatggtgttggagacatcattgagtatgaaagtgtgtgcaaatttgtgctgacctccactaccaaacacaagttcgtgtcgaggcttgtccaaatcgtggtctctgaggatgcgctgatgtccaagattgcactgcattttctgaatcgcaaagagacgcttgtggaggaggtcgttgcggtggtcaaagctcacctgaaatctgatgactggcagaaccgccgtaccggaataagagtcatggctgcaattgcgaagcccggcttcgaggttaacatcacttttgctggtgaactgataccgcaacttctatctcttttgatggatcctgaagctgaagttcgttgtgtgcttattaagacattaagggcattcagttcaaatttatgggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000166 GO:0000278 GO:0000280 GO:0001882 GO:0001883 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005933 GO:0005934 GO:0005935 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007049 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010458 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0017076 GO:0019001 GO:0022402 GO:0030427 GO:0031090 GO:0031224 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042277 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0046907 GO:0048285 GO:0051169 GO:0051170 GO:0051179 GO:0051233 GO:0051234 GO:0051641 GO:0051649 GO:0061608 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072686 GO:0097159 GO:0097367 GO:0140014 GO:0140104 GO:0140142 GO:1901265 GO:1901363 GO:1903047 GO:1990023
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

198

Amino Acids

22.61

Weight (kDa)

6.91

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025492)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000828.1_g000013
rosa_samantha Rh3CG343200 Rh3DG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 95
AciI CCGC 4 cut(s) 52, 380, 421, 503
AclWI GGATC 2 cut(s) 521, 534
AcsI RAATTY 2 cut(s) 242, 583
AcuI CTGAAG 2 cut(s) 552, 558
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 147, 151, 298
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 582
AjiI CACGTC 2 cut(s) 57, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 175, 392, 536
AluI AGCT 3 cut(s) 175, 392, 536
Alw26I GTCTC 3 cut(s) 207, 307, 350
AlwI GGATC 2 cut(s) 521, 534
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 242, 583
AspLEI GCGC 2 cut(s) 157, 316
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 71, 386, 503
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BamHI GGATCC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 97, 149, 170, 517
BceAI ACGGC 2 cut(s) 164, 408
BclI TGATCA 1 cut(s) 168
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 3 cut(s) 207, 307, 350
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 462
BmgBI CACGTC 2 cut(s) 57, 130
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 428
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 151, 298
Bse1I ACTGG 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 5 cut(s) 108, 130, 141, 162, 316
BseLI CCNNNNNNNGG 3 cut(s) 147, 151, 298
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 433
BsiSI CCGG 3 cut(s) 122, 429, 462
BslI CCNNNNNNNGG 3 cut(s) 147, 151, 298
BsmAI GTCTC 3 cut(s) 207, 307, 350
BsmBI CGTCTC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 572
Bso31I GGTCTC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 168, 526
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 4 cut(s) 52, 380, 421, 503
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 2 cut(s) 521, 534
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 168, 526
BssNAI GTATAC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 5 cut(s) 108, 130, 141, 162, 316
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 2 cut(s) 157, 316
BstKTI GATC 2 cut(s) 171, 529
BstMAI GTCTC 3 cut(s) 207, 307, 350
BstMBI GATC 2 cut(s) 168, 526
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BstZ17I GTATAC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 2 cut(s) 57, 130
BtsCI GGATG 5 cut(s) 108, 130, 141, 162, 316
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 2 cut(s) 157, 316
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 31, 99, 184, 199, 442
CviJI RGCY 9 cut(s) 121, 151, 175, 286, 392, 446, 460, 465, 536
CviKI_1 RGCY 9 cut(s) 121, 151, 175, 286, 392, 446, 460, 465, 536
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 170, 528
DpnII GATC 2 cut(s) 168, 526
Eco130I CCWWGG 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 552, 558
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 5 cut(s) 34, 102, 187, 202, 445
FaiI YATR 8 cut(s) 32, 96, 100, 185, 200, 228, 443, 589
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 449, 481
FatI CATG 5 cut(s) 30, 98, 183, 198, 441
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 5 cut(s) 115, 128, 137, 149, 323
Fsp4HI GCNGC 1 cut(s) 447
GlaI GCGC 2 cut(s) 156, 315
GluI GCNGC 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 158
HapII CCGG 3 cut(s) 122, 429, 462
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 157, 316
Hin1II CATG 5 cut(s) 34, 102, 187, 202, 445
Hin6I GCGC 2 cut(s) 155, 314
HinP1I GCGC 2 cut(s) 155, 314
HincII GTYRAC 2 cut(s) 49, 475
HindII GTYRAC 2 cut(s) 49, 475
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 74, 346, 438
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 3 cut(s) 122, 429, 462
HphI GGTGA 3 cut(s) 71, 386, 503
Hpy166II GTNNAC 5 cut(s) 49, 96, 133, 475, 494
Hpy188I TCNGA 4 cut(s) 146, 307, 345, 406
Hpy188III TCNNGA 2 cut(s) 166, 530
Hpy8I GTNNAC 5 cut(s) 49, 96, 133, 475, 494
Hpy99I CGWCG 2 cut(s) 61, 150
HpyCH4IV ACGT 4 cut(s) 18, 56, 90, 129
HpyCH4V TGCA 7 cut(s) 4, 109, 116, 240, 332, 337, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 4 cut(s) 18, 56, 90, 129
Hsp92II CATG 5 cut(s) 34, 102, 187, 202, 445
HspAI GCGC 2 cut(s) 155, 314
Ksp22I TGATCA 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 168, 526
LpnPI CCDG 9 cut(s) 135, 137, 179, 397, 410, 442, 474, 475, 543
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 301
MaeII ACGT 4 cut(s) 18, 56, 90, 129
MalI GATC 2 cut(s) 170, 528
MboI GATC 2 cut(s) 168, 526
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 526
MluCI AATT 4 cut(s) 111, 242, 450, 583
MlyI GAGTC 2 cut(s) 68, 447
MmeI TCCRAC 2 cut(s) 169, 190
MnlI CCTC 6 cut(s) 265, 276, 301, 361, 364, 463
MseI TTAA 4 cut(s) 15, 474, 558, 566
MspI CCGG 3 cut(s) 122, 429, 462
MspR9I CCNGG 1 cut(s) 462
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 452
NciI CCSGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 168, 526
NlaIII CATG 5 cut(s) 34, 102, 187, 202, 445
NlaIV GGNNCC 1 cut(s) 528
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 2 cut(s) 68, 446
PpsI GAGTC 2 cut(s) 68, 446
Ppu21I YACGTR 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 528
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 15, 474, 558, 566
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 2 cut(s) 168, 526
SchI GAGTC 2 cut(s) 68, 447
ScrFI CCNGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 301
Sse9I AATT 4 cut(s) 111, 242, 450, 583
SsiI CCGC 4 cut(s) 52, 380, 421, 503
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 4 cut(s) 21, 59, 93, 132
TaqI TCGA 3 cut(s) 59, 281, 468
TaqII GACCGA 1 cut(s) 56
TasI AATT 4 cut(s) 111, 242, 450, 583
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 15, 474, 558, 566
Tru9I TTAA 4 cut(s) 15, 474, 558, 566
TscAI CASTG 1 cut(s) 339
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 215, 243
TspRI CASTG 1 cut(s) 339
Van91I CCANNNNNTGG 1 cut(s) 298
XapI RAATTY 2 cut(s) 242, 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.