Rh3CG343200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
38768515 .. 38769137
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG343200.1

Sequence Viewer

Length: 279 bp
ATGTCCAAGATTGCACTGCATTTTCTGAATCGCAAAGAGACGCTTGTGGAGGAGGTCGTTGCGGTGGTCAAAGCTCACCTGAAATCTGATGACTGGCAGAACAGCCGTACCGGAATAAGAGTCACGGTTGCAATTGCGAAGCCCGGCTTCGAGGTTAACATCACTTTTGCTGGTGAACTGATACCGCTACTTCTATCTCTTTCGAGGGATCCTGAAGCTGAAGTTCGTTGTGTGCTTATTAAGACATTAAGGGCGTTCAGTTCAAATATATGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

8.98

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025492)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000828.1_g000013
rosa_samantha Rh3CG343200 Rh3DG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 185
AclWI GGATC 2 cut(s) 203, 216
AcuI CTGAAG 2 cut(s) 234, 240
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 264
AluBI AGCT 2 cut(s) 74, 218
AluI AGCT 2 cut(s) 74, 218
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 203, 216
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 68, 185
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BamHI GGATCC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 111, 144
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 2 cut(s) 62, 185
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 2 cut(s) 203, 216
BsrI ACTGG 1 cut(s) 98
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 127
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 5 cut(s) 74, 105, 142, 147, 218
CviKI_1 RGCY 5 cut(s) 74, 105, 142, 147, 218
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 234, 240
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 2 cut(s) 269, 271
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 131, 163
HapII CCGG 2 cut(s) 111, 144
HgaI GACGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 28, 120
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 111, 144
HphI GGTGA 2 cut(s) 68, 185
Hpy166II GTNNAC 2 cut(s) 157, 176
Hpy188I TCNGA 2 cut(s) 27, 88
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 157, 176
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 14, 19, 131
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 79, 92, 124, 156, 157, 225
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 132
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 4 cut(s) 43, 46, 145, 198
MseI TTAA 3 cut(s) 156, 240, 248
MspI CCGG 2 cut(s) 111, 144
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 132
NciI CCSGG 1 cut(s) 144
NdeII GATC 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 28
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 156, 240, 248
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 144
SetI ASST 5 cut(s) 57, 76, 81, 156, 220
Sse9I AATT 1 cut(s) 132
SsiI CCGC 2 cut(s) 62, 185
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 150, 203
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 3 cut(s) 156, 240, 248
Tru9I TTAA 3 cut(s) 156, 240, 248
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspRI CASTG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.