Rmu_sc0000854.1_g000076

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000854.1
OG0023056
Physical Location & Seq
Forward (+)
354003 .. 354351
349 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
atgggactttggacgctcttcgtcaccgcatcagttccggtcttggaatcgttcttgattactgcgcttggctcatatcttgcacttgatcgcgtgaaccttttgggcccagattgcaggaagtacttgaacactattgtattctatgtgaacactccagccctgattgctgccaaccttgcagagacaataacatatgacagcctggttaaactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

72

Amino Acids

7.91

Weight (kDa)

4.86

Isoelectric Point (pI)

23.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 71 1.6e-11 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8312847.1_g000001 Rmu_sc0000854.1_g000076 Rmu_sc0004451.1_g000003
rosa_roxburghii Rroxscaffold_2G00135840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 27
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 106
ApaI GGGCCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 106, 107
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 179
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 106, 107
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 37
BseBI CCWGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 108
Bsp120I GGGCCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 23
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 23
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 114, 167, 179
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 108
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 106, 107
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 4 cut(s) 72, 108, 161, 204
CviKI_1 RGCY 4 cut(s) 72, 108, 161, 204
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 110
FaiI YATR 4 cut(s) 76, 147, 196, 198
FaqI GGGAC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 171
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 97, 151
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 97, 151
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 83, 117, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 167, 179
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 51, 103, 123, 171, 176, 191
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 110
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 114, 167, 179
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 108
PspOMI GGGCCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 106, 107
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 106, 107
ScaI AGTACT 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 102, 180
SfaNI GCATC 1 cut(s) 38
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 216
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.