Rroxscaffold_2G00135840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0023056
Physical Location & Seq
Reverse (-)
73349137 .. 73349463
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135840.1

Sequence Viewer

Length: 327 bp
ATGTGCACATTAATCCAACCCTTGAAGATTATCCCCAATAATCCAAACCCGGATCCACCCAAAATCGTAGAGATTGACCCGATCGACTCAAATGCGAAGAACCCTCCACCATGGTCTAGCGATCTCGCCATAGAACACCAACCCACCACCACGATCTCCTTGAAGCCGCCATCGATTTCGCCTAAGAAGACAAGAGACGAGGCGCCGCATCTTCCACCGAGAACTACGAACCAAAATCACCATAGCCCGTCCGGCTACACCCATCTCACTCCGACTAGGCAAGGAGCCGTCGTCGTCGTGAGGGTGCCGCCGGACAAGCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

7.95

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8312847.1_g000001 Rmu_sc0000854.1_g000076 Rmu_sc0004451.1_g000003
rosa_roxburghii Rroxscaffold_2G00135840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 202, 304
AciI CCGC 3 cut(s) 167, 206, 308
AclWI GGATC 2 cut(s) 47, 60
AcyI GRCGYC 1 cut(s) 203
AgsI TTSAA 2 cut(s) 25, 163
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 2 cut(s) 47, 60
ApaLI GTGCAC 1 cut(s) 4
AseI ATTAAT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 52
BanI GGYRCC 2 cut(s) 202, 304
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 178, 270
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 117, 276
BfoI RGCGCY 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 3 cut(s) 167, 206, 308
BlsI GCNGC 3 cut(s) 168, 207, 309
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 4 cut(s) 54, 204, 286, 306
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 84
BshNI GGYRCC 2 cut(s) 202, 304
BshVI ATCGAT 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 50, 252, 311
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 52, 81, 121, 153
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 3 cut(s) 167, 206, 308
BspDI ATCGAT 1 cut(s) 173
BspLI GGNNCC 4 cut(s) 54, 204, 286, 306
BspPI GGATC 2 cut(s) 47, 60
BspT107I GGYRCC 2 cut(s) 202, 304
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 4 cut(s) 52, 81, 121, 153
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 4 cut(s) 55, 84, 124, 156
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 52, 81, 121, 153
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 252, 316
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 110
CfoI GCGC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 173
CviAII CATG 1 cut(s) 111
CviJI RGCY 5 cut(s) 166, 246, 255, 287, 319
CviKI_1 RGCY 5 cut(s) 166, 246, 255, 287, 319
DdeI CTNAG 1 cut(s) 183
DinI GGCGCC 1 cut(s) 204
DpnI GATC 4 cut(s) 54, 83, 123, 155
DpnII GATC 4 cut(s) 52, 81, 121, 153
Eco130I CCWWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 112, 131, 243
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 167, 206, 308
Fsp4HI GCNGC 3 cut(s) 167, 206, 308
FspBI CTAG 2 cut(s) 117, 276
GlaI GCGC 1 cut(s) 204
GluI GCNGC 3 cut(s) 167, 206, 308
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 3 cut(s) 50, 252, 311
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 50, 252, 311
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 293, 296, 299
HpyCH4V TGCA 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 316
HpyF3I CTNAG 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 203
KasI GGCGCC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 52, 81, 121, 153
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 2 cut(s) 63, 265
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 117, 276
MalI GATC 4 cut(s) 54, 83, 123, 155
MboI GATC 4 cut(s) 52, 81, 121, 153
MboII GAAGA 4 cut(s) 37, 109, 199, 203
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 203
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 40, 296
MnlI CCTC 3 cut(s) 114, 193, 294
MseI TTAA 1 cut(s) 11
MspI CCGG 3 cut(s) 50, 252, 311
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 252, 316
NarI GGCGCC 1 cut(s) 203
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 110
NdeII GATC 4 cut(s) 52, 81, 121, 153
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 4 cut(s) 54, 204, 286, 306
PkrI GCNGC 3 cut(s) 168, 207, 309
Ple19I CGATCG 1 cut(s) 84
PleI GAGTC 1 cut(s) 80
PluTI GGCGCC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 11
PspN4I GGNNCC 4 cut(s) 54, 204, 286, 306
PsuI RGATCY 1 cut(s) 52
PvuI CGATCG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 167, 206, 308
Sau3AI GATC 4 cut(s) 52, 81, 121, 153
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 321
SfaNI GCATC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 204
SsiI CCGC 3 cut(s) 167, 206, 308
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 2 cut(s) 117, 276
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 3 cut(s) 84, 173, 321
TauI GCSGC 3 cut(s) 169, 208, 310
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
VneI GTGCAC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 11
XspI CTAG 2 cut(s) 117, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.