Rmu_sc0004451.1_g000003

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004451.1
OG0023056
Physical Location & Seq
Reverse (-)
3777 .. 5635
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004451.1_g000003.1.cds

Sequence Viewer

Length: 447 bp
atgggactttggacgctcttcgtcaccgcatcagttccggtcttggaatcgttcttgattactgcgcttggctcatatcttgcacttgatcgcgtgaaccttttgggcccagattgcaggaagtacttgaacactattgtattctatgtgaacactccagccctgattgctgccaaccttgcagagacaataacatatgacagcctggttaaactatttcgcctgagaagacaagagacagaggcaccgcatcttccaccgagaactacgaaccaacatcaccatagcccgtccggctacacccatctcactccgactagggaaggagccgtcgtcgtcgtgagggtgccgccggacaagcgcgacgagaaactctgttttactcaaaccctaaaacgctccgacttgtgcggctccgacttgtccttggaattgtatatgctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

148

Amino Acids

16.66

Weight (kDa)

7.77

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8312847.1_g000001 Rmu_sc0000854.1_g000076 Rmu_sc0004451.1_g000003
rosa_roxburghii Rroxscaffold_2G00135840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 346
AccII CGCG 2 cut(s) 93, 363
AciI CCGC 4 cut(s) 27, 248, 350, 411
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 179, 230
AoxI GGCC 1 cut(s) 106
ApaI GGGCCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 67, 363
AspS9I GGNCC 2 cut(s) 106, 107
AsuHPI GGTGA 2 cut(s) 16, 272
BaeGI GKGCMC 1 cut(s) 110
BanI GGYRCC 2 cut(s) 244, 346
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 179, 230
BfaI CTAG 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 3 cut(s) 171, 350, 412
BlsI GCNGC 3 cut(s) 172, 351, 413
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 106, 107
BmiI GGNNCC 5 cut(s) 108, 246, 328, 348, 415
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 38, 259
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 426
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 93, 363
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 244, 346
BsiSI CCGG 3 cut(s) 38, 294, 353
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 179, 230
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 108
Bsp120I GGGCCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 4 cut(s) 27, 248, 350, 411
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 2 cut(s) 93, 363
BspLI GGNNCC 5 cut(s) 108, 246, 328, 348, 415
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 2 cut(s) 244, 346
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 224
BstFNI CGCG 2 cut(s) 93, 363
BstHHI GCGC 2 cut(s) 67, 363
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 179, 230
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 5 cut(s) 114, 167, 179, 294, 358
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 2 cut(s) 93, 363
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 108
CfoI GCGC 2 cut(s) 67, 363
Cfr13I GGNCC 2 cut(s) 106, 107
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 8 cut(s) 72, 108, 161, 204, 288, 297, 329, 414
CviKI_1 RGCY 8 cut(s) 72, 108, 161, 204, 288, 297, 329, 414
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 224
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 426
FaiI YATR 7 cut(s) 76, 147, 196, 198, 285, 438, 440
FaqI GGGAC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 171, 350, 412
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 171, 350, 412
FspBI CTAG 1 cut(s) 318
GlaI GCGC 2 cut(s) 66, 362
GluI GCNGC 3 cut(s) 171, 350, 412
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 38, 294, 353
HgaI GACGC 1 cut(s) 22
HhaI GCGC 2 cut(s) 67, 363
Hin6I GCGC 2 cut(s) 65, 361
HinP1I GCGC 2 cut(s) 65, 361
HinfI GANTC 1 cut(s) 47
HpaII CCGG 3 cut(s) 38, 294, 353
HphI GGTGA 2 cut(s) 16, 272
Hpy166II GTNNAC 2 cut(s) 97, 151
Hpy188I TCNGA 3 cut(s) 315, 403, 418
Hpy188III TCNNGA 2 cut(s) 55, 340
Hpy8I GTNNAC 2 cut(s) 97, 151
Hpy99I CGWCG 4 cut(s) 335, 338, 341, 368
HpyAV CCTTC 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 83, 117, 182
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 167, 179, 294, 358
HpyF3I CTNAG 1 cut(s) 224
HspAI GCGC 2 cut(s) 65, 361
Kzo9I GATC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 3 cut(s) 326, 404, 419
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 38, 259
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 10, 240, 245
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 1 cut(s) 431
MmeI TCCRAC 3 cut(s) 338, 426, 441
MnlI CCTC 2 cut(s) 235, 336
MseI TTAA 1 cut(s) 210
MspI CCGG 3 cut(s) 38, 294, 353
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 93, 363
MwoI GCNNNNNNNGC 5 cut(s) 114, 167, 179, 294, 358
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 5 cut(s) 108, 246, 328, 348, 415
NmuCI GTSAC 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 172, 351, 413
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 5 cut(s) 108, 246, 328, 348, 415
PspOMI GGGCCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 106, 107
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 171, 350, 412
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 106, 107
ScaI AGTACT 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 102, 180
SfaNI GCATC 2 cut(s) 38, 259
Sse9I AATT 1 cut(s) 431
SsiI CCGC 4 cut(s) 27, 248, 350, 411
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 426
TasI AATT 1 cut(s) 431
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 352, 414
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 22
XspI CTAG 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.