Rmu_sc0000876.1_g000001

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000876.1
OG0025496
Physical Location & Seq
Forward (+)
1 .. 1332
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000876.1_g000001.1.cds

Sequence Viewer

Length: 741 bp
aagtcgtctctagcccgatctccaagcccagactacagggatcgcgatcaccatcgccagcaccgatacgagaggtcctctccagaacccagagaccgagaccgaagaccctcacgtgacctcgtcgagcctctcccgccaccgcgccctcctaagagaaaatccgagcaccaccacgaccgcgaccgcgaccgagagccccagcgcgaaagcgccaaggactacgactactacgacgacgagaagccccgccagaaacgtcaccgttccgagtcttcctcttcgaaacctgccgcgaccgaaactgcaccaccctccaagcccagctctgcaaagctcgctgctgaaactgcgtcagccaagagcaaggccagcgtgttctcgaggattagcttccctgaaggggaagcgaacaagaagaggaagagctctcctaccgcgaaggaggtggcgggtggttcgaaagagctggcgaatggcttccacgaccatgagtatagcaagtccactaaggttgctactgctgctgcggctgtgagtagcagcaggaagactactagtgctgtgagttctcctgctgtggactatgagtcaagcgacgacgacaggcacttcaagaggaagaagaagtcatcaaggtatgcagaggcttcgccgccggcggtgcagcaagaggaggagccttcgaggcactctagaggttccagggatcgagagcgggagcataggcggcagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

246

Amino Acids

27.99

Weight (kDa)

9.96

Isoelectric Point (pI)

78.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025496)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8311659.1_g000001 Rmu_sc0000876.1_g000001 Rmu_sc0001714.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 718
AccII CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
AclWI GGATC 2 cut(s) 48, 717
AcuI CTGAAG 1 cut(s) 420
AcvI CACGTG 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 403
AgsI TTSAA 1 cut(s) 616
AhdI GACNNNNNGTC 1 cut(s) 589
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 5 cut(s) 327, 337, 393, 429, 469
AluI AGCT 5 cut(s) 327, 337, 393, 429, 469
Alw21I GWGCWC 2 cut(s) 171, 431
Alw26I GTCTC 3 cut(s) 12, 87, 93
AlwI GGATC 2 cut(s) 48, 717
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 5 cut(s) 341, 524, 527, 543, 667
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 3 cut(s) 147, 207, 215
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 41, 254
AsuII TTCGAA 2 cut(s) 284, 461
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 75
BanII GRGCYC 2 cut(s) 201, 431
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 3 cut(s) 112, 267, 557
Bbv12I GWGCWC 2 cut(s) 171, 431
BbvI GCAGC 5 cut(s) 328, 511, 514, 555, 679
BccI CCATC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BciT130I CCWGG 1 cut(s) 706
BcoDI GTCTC 3 cut(s) 12, 87, 93
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 11, 558, 696
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 688
BisI GCNGC 9 cut(s) 294, 342, 525, 528, 531, 544, 656, 668, 731
BlsI GCNGC 9 cut(s) 295, 343, 526, 529, 532, 545, 657, 669, 732
Bme1390I CCNGG 1 cut(s) 706
Bme18I GGWCC 1 cut(s) 75
BmeRI GACNNNNNGTC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 681, 703
BmrFI CCNGG 1 cut(s) 706
BpiI GAAGAC 3 cut(s) 112, 267, 557
BplI GAGNNNNNCTC 6 cut(s) 62, 94, 64, 96, 263, 295
BpmI CTGGAG 1 cut(s) 66
Bpu14I TTCGAA 2 cut(s) 284, 461
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 2 cut(s) 45, 51
BsaI GGTCTC 2 cut(s) 87, 93
BsaJI CCNNGG 2 cut(s) 216, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 1 cut(s) 658
Bse8I GATNNNNATC 2 cut(s) 45, 51
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 2 cut(s) 216, 705
BseJI GATNNNNATC 2 cut(s) 45, 51
BseLI CCNNNNNNNGG 1 cut(s) 403
BseRI GAGGAG 2 cut(s) 689, 692
BseXI GCAGC 5 cut(s) 328, 511, 514, 555, 679
BseYI CCCAGC 2 cut(s) 201, 323
BsgI GTGCAG 2 cut(s) 291, 686
Bsh1236I CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
Bsh1285I CGRYCG 4 cut(s) 181, 187, 193, 300
BshFI GGCC 1 cut(s) 371
BsiEI CGRYCG 4 cut(s) 181, 187, 193, 300
BsiHKAI GWGCWC 2 cut(s) 171, 431
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 659
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 3 cut(s) 12, 87, 93
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 2 cut(s) 87, 93
BsoBI CYCGRG 1 cut(s) 382
Bsp119I TTCGAA 2 cut(s) 284, 461
Bsp1286I GDGCHC 3 cut(s) 171, 201, 431
Bsp143I GATC 4 cut(s) 17, 40, 46, 709
Bsp68I TCGCGA 1 cut(s) 45
BspANI GGCC 1 cut(s) 371
BspFNI CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
BspLI GGNNCC 2 cut(s) 681, 703
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 48, 717
BspQI GCTCTTC 1 cut(s) 419
BspT104I TTCGAA 2 cut(s) 284, 461
BspTNI GGTCTC 2 cut(s) 87, 93
BsrBI CCGCTC 1 cut(s) 718
BsrFI RCCGGY 1 cut(s) 658
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 2 cut(s) 216, 705
BssMI GATC 4 cut(s) 17, 40, 46, 709
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 3 cut(s) 286, 413, 419
BstBAI YACGTR 1 cut(s) 116
BstBI TTCGAA 2 cut(s) 284, 461
BstC8I GCNNGC 5 cut(s) 59, 339, 373, 471, 660
BstDEI CTNAG 2 cut(s) 153, 510
BstFNI CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 3 cut(s) 147, 207, 215
BstKTI GATC 4 cut(s) 20, 43, 49, 712
BstMAI GTCTC 3 cut(s) 12, 87, 93
BstMBI GATC 4 cut(s) 17, 40, 46, 709
BstMCI CGRYCG 4 cut(s) 181, 187, 193, 300
BstMWI GCNNNNNNNGC 9 cut(s) 136, 338, 350, 372, 524, 530, 664, 688, 730
BstNI CCWGG 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 704
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
BstV1I GCAGC 5 cut(s) 328, 511, 514, 555, 679
BstV2I GAAGAC 3 cut(s) 112, 267, 557
BsuRI GGCC 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 38
BtuMI TCGCGA 1 cut(s) 45
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 5 cut(s) 59, 339, 373, 471, 660
CfoI GCGC 3 cut(s) 147, 207, 215
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 75
CseI GACGC 1 cut(s) 342
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 1 cut(s) 491
DdeI CTNAG 2 cut(s) 153, 510
DpnI GATC 4 cut(s) 19, 42, 48, 711
DpnII GATC 4 cut(s) 17, 40, 46, 709
DriI GACNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 3 cut(s) 286, 413, 419
Eam1105I GACNNNNNGTC 1 cut(s) 589
EarI CTCTTC 3 cut(s) 286, 413, 419
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 2 cut(s) 201, 431
Eco31I GGTCTC 2 cut(s) 87, 93
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 420
Eco72I CACGTG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 2 cut(s) 201, 431
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 1 cut(s) 494
FaiI YATR 5 cut(s) 492, 498, 588, 642, 726
FatI CATG 1 cut(s) 490
FauI CCCGC 4 cut(s) 144, 257, 445, 711
Fnu4HI GCNGC 9 cut(s) 294, 342, 525, 528, 531, 544, 656, 668, 731
FriOI GRGCYC 2 cut(s) 201, 431
Fsp4HI GCNGC 9 cut(s) 294, 342, 525, 528, 531, 544, 656, 668, 731
FspBI CTAG 3 cut(s) 11, 558, 696
GlaI GCGC 3 cut(s) 146, 206, 214
GluI GCNGC 9 cut(s) 294, 342, 525, 528, 531, 544, 656, 668, 731
GsaI CCCAGC 2 cut(s) 205, 327
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 342
HhaI GCGC 3 cut(s) 147, 207, 215
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 3 cut(s) 145, 205, 213
HinP1I GCGC 3 cut(s) 145, 205, 213
HinfI GANTC 2 cut(s) 272, 590
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 41, 254
Hpy166II GTNNAC 2 cut(s) 507, 583
Hpy188I TCNGA 2 cut(s) 166, 271
Hpy188III TCNNGA 6 cut(s) 44, 83, 382, 616, 696, 713
Hpy8I GTNNAC 2 cut(s) 507, 583
Hpy99I CGWCG 5 cut(s) 128, 239, 242, 602, 605
HpyAV CCTTC 3 cut(s) 395, 436, 693
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 115, 259
HpyCH4V TGCA 4 cut(s) 308, 332, 644, 667
HpyF10VI GCNNNNNNNGC 9 cut(s) 136, 338, 350, 372, 524, 530, 664, 688, 730
HpyF3I CTNAG 2 cut(s) 153, 510
HpySE526I ACGT 2 cut(s) 115, 259
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 3 cut(s) 145, 205, 213
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 4 cut(s) 17, 40, 46, 709
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 679, 721
Lsp1109I GCAGC 5 cut(s) 328, 511, 514, 555, 679
MaeI CTAG 3 cut(s) 11, 558, 696
MaeII ACGT 2 cut(s) 115, 259
MaeIII GTNAC 2 cut(s) 116, 260
MalI GATC 4 cut(s) 19, 42, 48, 711
MbiI CCGCTC 1 cut(s) 718
MboI GATC 4 cut(s) 17, 40, 46, 709
MboII GAAGA 8 cut(s) 117, 267, 273, 430, 436, 562, 634, 637
MhlI GDGCHC 3 cut(s) 171, 201, 431
MlyI GAGTC 2 cut(s) 281, 599
MreI CGCCGGCG 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 706
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 7 cut(s) 45, 145, 183, 189, 207, 296, 440
MwoI GCNNNNNNNGC 9 cut(s) 136, 338, 350, 372, 524, 530, 664, 688, 730
NaeI GCCGGC 1 cut(s) 660
NdeII GATC 4 cut(s) 17, 40, 46, 709
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 2 cut(s) 681, 703
NmuCI GTSAC 2 cut(s) 116, 260
NruI TCGCGA 1 cut(s) 45
NspV TTCGAA 2 cut(s) 284, 461
PaeR7I CTCGAG 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 2 cut(s) 61, 231
PdiI GCCGGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 479
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 9 cut(s) 295, 343, 526, 529, 532, 545, 657, 669, 732
PleI GAGTC 2 cut(s) 280, 598
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 2 cut(s) 280, 598
Ppu21I YACGTR 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 704
PspCI CACGTG 1 cut(s) 116
PspFI CCCAGC 2 cut(s) 201, 323
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 2 cut(s) 681, 703
PspPI GGNCC 1 cut(s) 75
PspPPI RGGWCCY 1 cut(s) 75
PsyI GACNNNGTC 1 cut(s) 122
RruI TCGCGA 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 419
SatI GCNGC 9 cut(s) 294, 342, 525, 528, 531, 544, 656, 668, 731
Sau3AI GATC 4 cut(s) 17, 40, 46, 709
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 281, 599
ScrFI CCNGG 1 cut(s) 706
SduI GDGCHC 3 cut(s) 171, 201, 431
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 382
SfuI TTCGAA 2 cut(s) 284, 461
SgrAI CRCCGGYG 1 cut(s) 658
SinI GGWCC 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 557
SspMI CTAG 3 cut(s) 11, 558, 696
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 118, 262
TaqI TCGA 6 cut(s) 126, 284, 383, 461, 686, 712
TaqII GACCGA 4 cut(s) 111, 117, 207, 314
TauI GCSGC 4 cut(s) 296, 533, 658, 733
TseFI GTSAC 2 cut(s) 116, 260
TseI GCWGC 5 cut(s) 341, 524, 527, 543, 667
Tsp45I GTSAC 2 cut(s) 116, 260
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 695
XhoI CTCGAG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 3 cut(s) 11, 558, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.