Rmu_sc0001714.1_g000016

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001714.1
OG0025496
Physical Location & Seq
Reverse (-)
61447 .. 63194
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001714.1_g000016.1.cds

Sequence Viewer

Length: 924 bp
atgagagacggggccaaaggtacatttgaaaaatttgattttgtcttggacttgggaactgtggagcttggtatatatctttatttacatgatttatttttcaacagggagttctccaaagatcgggaatatggaagggatgtgagtggtgatggcgatgtgcctccaatgaagtccaaatcaaagtcgtctctagcccgatctccaagcccagactacagggatcgcgatcaccatcgccagcaccgatacgagaggtcctctccagaacccagagaccgagaccgaagaccctcacgtgacctcgtcgagcctctcccgccaccgcgccctcctaagagaaaatccgagcaccaccacgaccgcgaccgcgaccgagagccccagcgcgaaagcgccaaggactacgactactacgacgacgagaagccccgccagaaacgtcaccgttccgagtcttcctcttcgaaacctgccgcgaccgaaactgcaccaccctccaagcccagctctgcaaagctcgctgctgaaactgcgtcagccaagagcaaggccagcgtgttctcgaggattagcttccctgaaggggaagcgaacaagaagaggaagagctctcctgccgcgaaggaggtggcgggtggttcgaaagagctggcgaatggcttccacgaccatgagtatagcaagtccactaaggttgctactgctgctgcggctgtgagtagcagcaggaagactactagtgctgtgagttctcctgctgtggactatgagtcaagcgacgacgacaggcacttcaagaggaagaagaagtcatcaaggtatgcagaggcttcgccgccggcggtgcagcaagaggaggagccttcgaggcactctagaggttccagggatcgagagcgggagcataggcggcagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

307

Amino Acids

34.95

Weight (kDa)

9.64

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025496)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8311659.1_g000001 Rmu_sc0000876.1_g000001 Rmu_sc0001714.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 901
AccII CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
AclWI GGATC 2 cut(s) 231, 900
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 603
AcvI CACGTG 1 cut(s) 299
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 123, 586
AgsI TTSAA 3 cut(s) 29, 103, 799
AhdI GACNNNNNGTC 1 cut(s) 772
AhlI ACTAGT 1 cut(s) 740
AjnI CCWGG 1 cut(s) 887
AluBI AGCT 6 cut(s) 67, 510, 520, 576, 612, 652
AluI AGCT 6 cut(s) 67, 510, 520, 576, 612, 652
Alw21I GWGCWC 2 cut(s) 354, 614
Alw26I GTCTC 3 cut(s) 195, 270, 276
AlwI GGATC 2 cut(s) 231, 900
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 2 cut(s) 12, 552
ApeKI GCWGC 5 cut(s) 524, 707, 710, 726, 850
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 662
AspLEI GCGC 3 cut(s) 330, 390, 398
AspS9I GGNCC 2 cut(s) 12, 258
AsuHPI GGTGA 3 cut(s) 161, 224, 437
AsuII TTCGAA 2 cut(s) 467, 644
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 384, 614
BbrPI CACGTG 1 cut(s) 299
BbsI GAAGAC 3 cut(s) 295, 450, 740
Bbv12I GWGCWC 2 cut(s) 354, 614
BbvI GCAGC 5 cut(s) 511, 694, 697, 738, 862
BccI CCATC 2 cut(s) 146, 243
BcgI CGANNNNNNTGC 2 cut(s) 816, 850
BciT130I CCWGG 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 195, 270, 276
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 3 cut(s) 194, 741, 879
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 871
Bme1390I CCNGG 1 cut(s) 889
Bme18I GGWCC 1 cut(s) 258
BmeRI GACNNNNNGTC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 2 cut(s) 12, 258
BmiI GGNNCC 3 cut(s) 13, 864, 886
BmrFI CCNGG 1 cut(s) 889
BpiI GAAGAC 3 cut(s) 295, 450, 740
BplI GAGNNNNNCTC 6 cut(s) 245, 277, 247, 279, 446, 478
BpmI CTGGAG 1 cut(s) 249
Bpu14I TTCGAA 2 cut(s) 467, 644
BsaAI YACGTR 1 cut(s) 299
BsaBI GATNNNNATC 2 cut(s) 228, 234
BsaI GGTCTC 2 cut(s) 270, 276
BsaJI CCNNGG 2 cut(s) 399, 888
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 586
Bse118I RCCGGY 1 cut(s) 841
Bse8I GATNNNNATC 2 cut(s) 228, 234
BseBI CCWGG 1 cut(s) 889
BseDI CCNNGG 2 cut(s) 399, 888
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 2 cut(s) 228, 234
BseLI CCNNNNNNNGG 2 cut(s) 123, 586
BseRI GAGGAG 2 cut(s) 872, 875
BseXI GCAGC 5 cut(s) 511, 694, 697, 738, 862
BseYI CCCAGC 2 cut(s) 384, 506
BsgI GTGCAG 2 cut(s) 474, 869
Bsh1236I CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
Bsh1285I CGRYCG 4 cut(s) 364, 370, 376, 483
BshFI GGCC 2 cut(s) 14, 554
BsiEI CGRYCG 4 cut(s) 364, 370, 376, 483
BsiHKAI GWGCWC 2 cut(s) 354, 614
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 1 cut(s) 842
BslI CCNNNNNNNGG 2 cut(s) 123, 586
BsmAI GTCTC 3 cut(s) 195, 270, 276
BsmBI CGTCTC 1 cut(s) 195
BsnI GGCC 2 cut(s) 14, 554
Bso31I GGTCTC 2 cut(s) 270, 276
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 2 cut(s) 467, 644
Bsp1286I GDGCHC 3 cut(s) 354, 384, 614
Bsp143I GATC 5 cut(s) 121, 200, 223, 229, 892
Bsp68I TCGCGA 1 cut(s) 228
BspANI GGCC 2 cut(s) 14, 554
BspFNI CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
BspLI GGNNCC 3 cut(s) 13, 864, 886
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 2 cut(s) 231, 900
BspQI GCTCTTC 1 cut(s) 602
BspT104I TTCGAA 2 cut(s) 467, 644
BspTNI GGTCTC 2 cut(s) 270, 276
BsrBI CCGCTC 1 cut(s) 901
BsrFI RCCGGY 1 cut(s) 841
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 399, 888
BssMI GATC 5 cut(s) 121, 200, 223, 229, 892
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 889
Bst4CI ACNGT 2 cut(s) 61, 449
Bst6I CTCTTC 3 cut(s) 469, 596, 602
BstBAI YACGTR 1 cut(s) 299
BstBI TTCGAA 2 cut(s) 467, 644
BstC8I GCNNGC 5 cut(s) 242, 522, 556, 654, 843
BstDEI CTNAG 2 cut(s) 336, 693
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 330, 390, 398
BstKTI GATC 5 cut(s) 124, 203, 226, 232, 895
BstMAI GTCTC 3 cut(s) 195, 270, 276
BstMBI GATC 5 cut(s) 121, 200, 223, 229, 892
BstMCI CGRYCG 4 cut(s) 364, 370, 376, 483
BstMWI GCNNNNNNNGC 9 cut(s) 319, 521, 533, 555, 707, 713, 847, 871, 913
BstNI CCWGG 1 cut(s) 889
BstSCI CCNGG 1 cut(s) 887
BstSFI CTRYAG 1 cut(s) 217
BstUI CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
BstV1I GCAGC 5 cut(s) 511, 694, 697, 738, 862
BstV2I GAAGAC 3 cut(s) 295, 450, 740
BsuRI GGCC 2 cut(s) 14, 554
BtgZI GCGATG 2 cut(s) 171, 221
BtsCI GGATG 1 cut(s) 145
BtuMI TCGCGA 1 cut(s) 228
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 5 cut(s) 242, 522, 556, 654, 843
CfoI GCGC 3 cut(s) 330, 390, 398
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 12, 258
CseI GACGC 1 cut(s) 525
Csp6I GTAC 1 cut(s) 21
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 2 cut(s) 89, 674
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 336, 693
DpnI GATC 5 cut(s) 123, 202, 225, 231, 894
DpnII GATC 5 cut(s) 121, 200, 223, 229, 892
DriI GACNNNNNGTC 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 469, 596, 602
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 3 cut(s) 469, 596, 602
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 384, 614
Eco31I GGTCTC 2 cut(s) 270, 276
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 603
Eco72I CACGTG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 384, 614
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 2 cut(s) 92, 677
FaiI YATR 9 cut(s) 74, 76, 90, 132, 675, 681, 771, 825, 909
FatI CATG 2 cut(s) 88, 673
FauI CCCGC 4 cut(s) 327, 440, 628, 894
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 2 cut(s) 384, 614
FspBI CTAG 3 cut(s) 194, 741, 879
GlaI GCGC 3 cut(s) 329, 389, 397
GsaI CCCAGC 2 cut(s) 388, 510
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 14, 554
HapII CCGG 1 cut(s) 842
HgaI GACGC 1 cut(s) 525
HhaI GCGC 3 cut(s) 330, 390, 398
Hin1II CATG 2 cut(s) 92, 677
Hin6I GCGC 3 cut(s) 328, 388, 396
HinP1I GCGC 3 cut(s) 328, 388, 396
HinfI GANTC 2 cut(s) 455, 773
HpaII CCGG 1 cut(s) 842
HphI GGTGA 3 cut(s) 161, 224, 437
Hpy166II GTNNAC 2 cut(s) 690, 766
Hpy188I TCNGA 2 cut(s) 349, 454
Hpy188III TCNNGA 7 cut(s) 125, 227, 266, 565, 799, 879, 896
Hpy8I GTNNAC 2 cut(s) 690, 766
Hpy99I CGWCG 5 cut(s) 311, 422, 425, 785, 788
HpyAV CCTTC 4 cut(s) 129, 578, 619, 876
HpyCH4III ACNGT 2 cut(s) 61, 449
HpyCH4IV ACGT 2 cut(s) 298, 442
HpyCH4V TGCA 4 cut(s) 491, 515, 827, 850
HpyF10VI GCNNNNNNNGC 9 cut(s) 319, 521, 533, 555, 707, 713, 847, 871, 913
HpyF3I CTNAG 2 cut(s) 336, 693
HpySE526I ACGT 2 cut(s) 298, 442
Hsp92II CATG 2 cut(s) 92, 677
HspAI GCGC 3 cut(s) 328, 388, 396
KroI GCCGGC 1 cut(s) 841
KroNI GCCGGC 1 cut(s) 843
Kzo9I GATC 5 cut(s) 121, 200, 223, 229, 892
LguI GCTCTTC 1 cut(s) 602
LmnI GCTCC 3 cut(s) 64, 862, 904
Lsp1109I GCAGC 5 cut(s) 511, 694, 697, 738, 862
MaeI CTAG 3 cut(s) 194, 741, 879
MaeII ACGT 2 cut(s) 298, 442
MaeIII GTNAC 2 cut(s) 299, 443
MalI GATC 5 cut(s) 123, 202, 225, 231, 894
MbiI CCGCTC 1 cut(s) 901
MboI GATC 5 cut(s) 121, 200, 223, 229, 892
MboII GAAGA 8 cut(s) 300, 450, 456, 613, 619, 745, 817, 820
MhlI GDGCHC 3 cut(s) 354, 384, 614
MluCI AATT 1 cut(s) 32
MlyI GAGTC 2 cut(s) 464, 782
MreI CGCCGGCG 1 cut(s) 841
MroNI GCCGGC 1 cut(s) 841
MroXI GAANNNNTTC 1 cut(s) 662
MslI CAYNNNNRTG 1 cut(s) 672
MspI CCGG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 889
MvaI CCWGG 1 cut(s) 889
MvnI CGCG 7 cut(s) 228, 328, 366, 372, 390, 479, 623
MwoI GCNNNNNNNGC 9 cut(s) 319, 521, 533, 555, 707, 713, 847, 871, 913
NaeI GCCGGC 1 cut(s) 843
NdeII GATC 5 cut(s) 121, 200, 223, 229, 892
NgoMIV GCCGGC 1 cut(s) 841
NlaIII CATG 2 cut(s) 92, 677
NlaIV GGNNCC 3 cut(s) 13, 864, 886
NmuCI GTSAC 2 cut(s) 299, 443
NruI TCGCGA 1 cut(s) 228
NspV TTCGAA 2 cut(s) 467, 644
PaeR7I CTCGAG 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 244, 414
PdiI GCCGGC 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 662
PflFI GACNNNGTC 1 cut(s) 305
PleI GAGTC 2 cut(s) 463, 781
PmaCI CACGTG 1 cut(s) 299
PmlI CACGTG 1 cut(s) 299
PpsI GAGTC 2 cut(s) 463, 781
Ppu21I YACGTR 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 614
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 887
PspCI CACGTG 1 cut(s) 299
PspFI CCCAGC 2 cut(s) 384, 506
PspGI CCWGG 1 cut(s) 887
PspN4I GGNNCC 3 cut(s) 13, 864, 886
PspPI GGNCC 2 cut(s) 12, 258
PspPPI RGGWCCY 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 305
RruI TCGCGA 1 cut(s) 228
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 602
Sau3AI GATC 5 cut(s) 121, 200, 223, 229, 892
Sau96I GGNCC 2 cut(s) 12, 258
SchI GAGTC 2 cut(s) 464, 782
ScrFI CCNGG 1 cut(s) 889
SduI GDGCHC 3 cut(s) 354, 384, 614
SfcI CTRYAG 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 565
SfuI TTCGAA 2 cut(s) 467, 644
SgrAI CRCCGGYG 1 cut(s) 841
SinI GGWCC 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 1 cut(s) 32
SspMI CTAG 3 cut(s) 194, 741, 879
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 887
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 61, 449
TaiI ACGT 2 cut(s) 301, 445
TaqI TCGA 6 cut(s) 309, 467, 566, 644, 869, 895
TaqII GACCGA 4 cut(s) 294, 300, 390, 497
TasI AATT 1 cut(s) 32
TauI GCSGC 5 cut(s) 479, 623, 716, 841, 916
TseFI GTSAC 2 cut(s) 299, 443
TseI GCWGC 5 cut(s) 524, 707, 710, 726, 850
Tsp45I GTSAC 2 cut(s) 299, 443
TspDTI ATGAA 1 cut(s) 185
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 878
XhoI CTCGAG 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 3 cut(s) 194, 741, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.