Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000888.1

Orthogroup ID

OG0025497

Physical Location & Seq

Genomic Coordinates Reverse (-)

26534 .. 27138

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000888.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgccactgggcataatactcaacgaccgaaacacaaaatcgcaaaatgcaaaacgccgctgttctctcgtctcgccgctgttcgggtgcttaggtatcgctttcaagttcgccgagatggaccacatagcaaaggtgcatgatctggccgaagcttcgaaatcaatctcgacaaccaacccagattgctcaccaatcaccatgtttggcacggacacggatttttccttcattcgaatcatacttggaacccaaagaatgctcttctttttcacaaaccaacccagattgcacaccaatcaccgcgtttggcacagacatgcattttgccttcattctaatcatattaggttggtggaccgggatatggaagcgggcactgtgagaaaggcgggtcctcatgcgaggaatttgctgagagtgaagagtaggattgatatggtgaaggtgctgtttgagcagattatagtcaccaagtatgttacattgcttcaactggtttataaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

170

Amino Acids

19.52

Weight (kDa)

10.03

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025497)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000888.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050630
rosa_samantha	Rh3CG084500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AccII	CGCG	1 cut(s)	306
AciI	CCGC	5 cut(s)	58, 77, 304, 374, 392
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	83, 367
AgsI	TTSAA	2 cut(s)	106, 494
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspS9I	GGNCC	3 cut(s)	121, 358, 395
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	5 cut(s)	183, 190, 293, 454, 463
AsuII	TTCGAA	2 cut(s)	158, 235
AvaII	GGWCC	3 cut(s)	121, 358, 395
BaeGI	GKGCMC	1 cut(s)	380
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	58, 77
BlsI	GCNGC	2 cut(s)	59, 78
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	3 cut(s)	121, 358, 395
BmgT120I	GGNCC	3 cut(s)	121, 358, 395
BmiI	GGNNCC	2 cut(s)	250, 396
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu14I	TTCGAA	2 cut(s)	158, 235
BpuMI	CCSGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 367
Bse1I	ACTGG	2 cut(s)	12, 501
Bse3DI	GCAATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	83, 367
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	12, 501
BseSI	GKGCMC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	83, 367
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	149
Bsp119I	TTCGAA	2 cut(s)	158, 235
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	5 cut(s)	58, 77, 304, 374, 392
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	250, 396
BspQI	GCTCTTC	1 cut(s)	269
BspT104I	TTCGAA	2 cut(s)	158, 235
BsrDI	GCAATG	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	12, 501
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	269, 419
BstBI	TTCGAA	2 cut(s)	158, 235
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	91, 416
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	5, 378
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	121, 358, 395
CviAII	CATG	4 cut(s)	140, 202, 320, 401
CviJI	RGCY	2 cut(s)	149, 155
CviKI_1	RGCY	2 cut(s)	149, 155
DdeI	CTNAG	2 cut(s)	91, 416
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	269, 419
EarI	CTCTTC	2 cut(s)	269, 419
Eco47I	GGWCC	3 cut(s)	121, 358, 395
EcoO109I	RGGNCCY	1 cut(s)	395
EcoT22I	ATGCAT	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	4 cut(s)	143, 205, 323, 404
FatI	CATG	4 cut(s)	139, 201, 319, 400
FauI	CCCGC	2 cut(s)	367, 385
Fnu4HI	GCNGC	2 cut(s)	58, 77
Fsp4HI	GCNGC	2 cut(s)	58, 77
GluI	GCNGC	2 cut(s)	58, 77
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	4 cut(s)	143, 205, 323, 404
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	5 cut(s)	183, 190, 293, 454, 463
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	238, 341, 439
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	50, 139, 292, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	91, 416
Hsp92II	CATG	4 cut(s)	143, 205, 323, 404
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	131, 195, 298, 374, 482
MaeIII	GTNAC	2 cut(s)	469, 481
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	256, 436
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	409
MnlI	CCTC	2 cut(s)	399, 408
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	511
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	60, 79
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	143, 205, 323, 404
NlaIV	GGNNCC	2 cut(s)	250, 396
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	2 cut(s)	158, 235
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	59, 78
PpuMI	RGGWCCY	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	250, 396
PspPI	GGNCC	3 cut(s)	121, 358, 395
PspPPI	RGGWCCY	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	2 cut(s)	58, 77
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	121, 358, 395
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	5 cut(s)	97, 138, 157, 353, 450
SfuI	TTCGAA	2 cut(s)	158, 235
SinI	GGWCC	3 cut(s)	121, 358, 395
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	5 cut(s)	58, 77, 304, 374, 392
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	158, 170, 235
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	409
TauI	GCSGC	2 cut(s)	60, 79
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	2 cut(s)	12, 385
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	220, 323
TspGWI	ACGGA	2 cut(s)	227, 233
TspRI	CASTG	2 cut(s)	12, 385
VpaK11BI	GGWCC	3 cut(s)	121, 358, 395
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.