Rh3CG084500

transfer

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
6605596 .. 6606870
1275 bp
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UTR
Exon/CDS
Intron
Rh3CG084500.1

Sequence Viewer

Length: 312 bp
ATGTTTGGCACAGACACGGATTTTTCCTTCATTCGAATCATACTGGGAACCCAAAGAATGCTCTTCTTTTTCACAAACCAACCCAGATTGCACACCAATCACCGCGTTTGGCACAGACATGGATTTTGCCTTCATTCTAATCATATTAGGTTGGTGGACGGGGATATGGAGGCGGGCACTGTGAGAAAGGCGGGTCCTCATGCGAGGAATTTGCTGAGAGTGAAGAGTAGGATTGATATGGTGAAGGTGCTGTTTGAGCAGATTATAGTCACCAAGTATGTTCCATTGCTTCAACTGGTTTATAAAGTTTAA

Protein Analysis

103

Amino Acids

12.15

Weight (kDa)

10.61

Isoelectric Point (pI)

18.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025497)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000888.1_g000006
rosa_roxburghii Rroxscaffold_1G00050630
rosa_samantha Rh3CG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AccII CGCG 1 cut(s) 105
AciI CCGC 3 cut(s) 103, 173, 191
AcsI RAATTY 1 cut(s) 208
AgsI TTSAA 1 cut(s) 293
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 92, 253, 262
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 49, 195
BmrI ACTGGG 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 48, 300
Bse3DI GCAATG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 2 cut(s) 48, 300
BseSI GKGCMC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 105
BsmI GAATGC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 179
BspACI CCGC 3 cut(s) 103, 173, 191
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 49, 195
BspQI GCTCTTC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 48, 300
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 68, 218
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 179
BstUI CGCG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 2 cut(s) 119, 200
DdeI CTNAG 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 68, 218
EarI CTCTTC 2 cut(s) 68, 218
Eco47I GGWCC 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 194
FaeI CATG 2 cut(s) 122, 203
FaiI YATR 9 cut(s) 41, 120, 144, 167, 201, 239, 266, 279, 303
FatI CATG 2 cut(s) 118, 199
FauI CCCGC 2 cut(s) 166, 184
Hin1II CATG 2 cut(s) 122, 203
HinfI GANTC 1 cut(s) 36
HphI GGTGA 3 cut(s) 92, 253, 262
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 37, 140, 238
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 2 cut(s) 122, 203
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 29, 97, 281
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 2 cut(s) 55, 235
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 208
MnlI CCTC 3 cut(s) 163, 198, 207
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 63
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 256
NlaIII CATG 2 cut(s) 122, 203
NlaIV GGNNCC 2 cut(s) 49, 195
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 68
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 194
PsiI TTATAA 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 49, 195
PspPI GGNCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 179
SetI ASST 2 cut(s) 152, 249
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 208
SsiI CCGC 3 cut(s) 103, 173, 191
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 19, 122
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.