Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0025215

Physical Location & Seq

Genomic Coordinates Forward (+)

71624 .. 72247

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcggaaccccaaatctccaagaccttcccggtgaaaccgaagcaaaaacccaagcctcgcaccccaaaacaaaccccagaatccaagtactggtcctccttcaaaaccaagcaaatccctaatctcatcgcctccataaactccctcaccttctcccccaccgcccctcactccttcgccgccgcccactccacctccctcaccctctacaacccccaaaaccaattctcccgctcctccaacatctccctaaacgacgtcgtctcctccgcctccttccgctccgacggcctcctcatcgccgccgccgacctctccggcctcgtccaagtcttcgatgtcaaaacccgaacccccctccggaggctccggtcccacacccgccccgtccgcttcgtcaagttccccgtcgccgacaagctccacttggtctctggcggcgacgacgcggttgtcaagtactgggacgtcgccggcgagaccacgatttgcgacttcctagggcacaaggactacgtgcgctgcggcgattggttaagctccacttggtttccggcggcgatgacgcggtcgtcaagtactgggacgtcgccggcgagaccacgatttgcgacttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

207

Amino Acids

22.85

Weight (kDa)

10.1

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	28 - 128	9.5e-06	WDHD1 first WD40 domain
WD40_Prp19	PF24814	42 - 158	5.5e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	45 - 176	1.9e-11	THOC3 beta-propeller domain
WDR55	PF24796	45 - 175	2.5e-09	WDR55
Beta-prop_WDR3_1st	PF25173	46 - 176	5.2e-13	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	47 - 137	2.2e-06	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	48 - 132	2.8e-06	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	49 - 181	3.1e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	77 - 167	2.3e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	87 - 179	2.4e-13	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0025215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002872
rosa_multiflora	Rmu_sc0000898.1_g000014
rosa_roxburghii	Rroxscaffold_1G00060520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	455, 574
AatII	GACGTC	3 cut(s)	264, 474, 593
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	2 cut(s)	237, 285
AccII	CGCG	2 cut(s)	452, 571
AccIII	TCCGGA	1 cut(s)	363
AcyI	GRCGYC	3 cut(s)	261, 471, 590
AfaI	GTAC	3 cut(s)	92, 464, 583
AfiI	CCNNNNNNNGG	3 cut(s)	93, 363, 366
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	2 cut(s)	424, 543
AluI	AGCT	2 cut(s)	424, 543
Alw26I	GTCTC	4 cut(s)	271, 439, 476, 595
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	2 cut(s)	292, 322
ApeKI	GCWGC	1 cut(s)	525
AspA2I	CCTAGG	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	96, 375
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	46, 142, 196
AvaII	GGWCC	2 cut(s)	96, 375
AvrII	CCTAGG	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	4 cut(s)	271, 439, 476, 595
BfaI	CTAG	2 cut(s)	503, 622
BisI	GCNGC	8 cut(s)	183, 186, 306, 309, 442, 526, 529, 561
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	8 cut(s)	184, 187, 307, 310, 443, 527, 530, 562
BmcAI	AGTACT	3 cut(s)	92, 464, 583
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	2 cut(s)	96, 375
BmgT120I	GGNCC	2 cut(s)	96, 375
BmiI	GGNNCC	3 cut(s)	9, 371, 377
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	2 cut(s)	475, 594
BmuI	ACTGGG	2 cut(s)	475, 594
BpiI	GAAGAC	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	520
BsaHI	GRCGYC	3 cut(s)	261, 471, 590
BsaI	GGTCTC	3 cut(s)	439, 476, 595
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	2 cut(s)	363, 372
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 182, 212, 215, 245, 251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 363, 366
Bse118I	RCCGGY	2 cut(s)	476, 595
Bse1I	ACTGG	3 cut(s)	98, 470, 589
BseAI	TCCGGA	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	502
BseLI	CCNNNNNNNGG	3 cut(s)	93, 363, 366
BseNI	ACTGG	3 cut(s)	98, 470, 589
BseRI	GAGGAG	3 cut(s)	229, 259, 287
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	452, 571
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	294, 324
BsiEI	CGRYCG	1 cut(s)	575
BsiSI	CCGG	7 cut(s)	32, 321, 364, 373, 477, 557, 596
BslFI	GGGAC	3 cut(s)	361, 482, 601
BslI	CCNNNNNNNGG	3 cut(s)	93, 363, 366
BsmAI	GTCTC	4 cut(s)	271, 439, 476, 595
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	3 cut(s)	361, 482, 601
BsnI	GGCC	2 cut(s)	294, 324
Bso31I	GGTCTC	3 cut(s)	439, 476, 595
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp13I	TCCGGA	1 cut(s)	363
BspANI	GGCC	2 cut(s)	294, 324
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	2 cut(s)	452, 571
BspLI	GGNNCC	3 cut(s)	9, 371, 377
BspTNI	GGTCTC	3 cut(s)	439, 476, 595
BsrBI	CCGCTC	2 cut(s)	237, 285
BsrFI	RCCGGY	2 cut(s)	476, 595
BsrI	ACTGG	3 cut(s)	98, 470, 589
BssAI	RCCGGY	2 cut(s)	476, 595
BssECI	CCNNGG	1 cut(s)	502
BssNI	GRCGYC	3 cut(s)	261, 471, 590
BssT1I	CCWWGG	1 cut(s)	502
BstACI	GRCGYC	3 cut(s)	261, 471, 590
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	478, 597
BstFNI	CGCG	2 cut(s)	452, 571
BstHHI	GCGC	1 cut(s)	525
BstMAI	GTCTC	4 cut(s)	271, 439, 476, 595
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 393
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	510
BstUI	CGCG	2 cut(s)	452, 571
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	294, 324
BtgZI	GCGATG	3 cut(s)	115, 286, 578
Cac8I	GCNNGC	2 cut(s)	478, 597
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	2 cut(s)	476, 595
Cfr13I	GGNCC	2 cut(s)	96, 375
CseI	GACGC	2 cut(s)	458, 577
Csp6I	GTAC	3 cut(s)	91, 463, 582
CviJI	RGCY	6 cut(s)	58, 294, 324, 370, 424, 543
CviKI_1	RGCY	6 cut(s)	58, 294, 324, 370, 424, 543
CviQI	GTAC	3 cut(s)	91, 463, 582
DrdI	GACNNNNNNGTC	2 cut(s)	455, 574
DseDI	GACNNNNNNGTC	2 cut(s)	455, 574
EciI	GGCGGA	2 cut(s)	20, 262
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	3 cut(s)	439, 476, 595
Eco47I	GGWCC	2 cut(s)	96, 375
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	271
FaiI	YATR	1 cut(s)	140
FalI	AAGNNNNNCTT	4 cut(s)	413, 445, 532, 564
FaqI	GGGAC	3 cut(s)	361, 482, 601
FauI	CCCGC	2 cut(s)	242, 392
Fnu4HI	GCNGC	8 cut(s)	183, 186, 306, 309, 442, 526, 529, 561
Fsp4HI	GCNGC	8 cut(s)	183, 186, 306, 309, 442, 526, 529, 561
FspBI	CTAG	2 cut(s)	503, 622
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	8 cut(s)	183, 186, 306, 309, 442, 526, 529, 561
HaeIII	GGCC	2 cut(s)	294, 324
HapII	CCGG	7 cut(s)	32, 321, 364, 373, 477, 557, 596
HgaI	GACGC	2 cut(s)	458, 577
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	3 cut(s)	261, 471, 590
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	7 cut(s)	32, 321, 364, 373, 477, 557, 596
HphI	GGTGA	3 cut(s)	46, 142, 196
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	364
Hpy99I	CGWCG	8 cut(s)	263, 266, 293, 416, 449, 452, 476, 595
HpyAV	CCTTC	5 cut(s)	37, 112, 163, 187, 289
HpyCH4IV	ACGT	4 cut(s)	261, 471, 519, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 393
HpySE526I	ACGT	4 cut(s)	261, 471, 519, 590
Hsp92I	GRCGYC	3 cut(s)	261, 471, 590
HspAI	GCGC	1 cut(s)	523
Kpn2I	TCCGGA	1 cut(s)	363
KroI	GCCGGC	2 cut(s)	476, 595
KroNI	GCCGGC	2 cut(s)	478, 597
LmnI	GCTCC	5 cut(s)	242, 290, 375, 429, 548
Lsp1109I	GCAGC	1 cut(s)	512
MaeI	CTAG	2 cut(s)	503, 622
MaeII	ACGT	4 cut(s)	261, 471, 519, 590
MbiI	CCGCTC	2 cut(s)	237, 285
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	267, 312
MreI	CGCCGGCG	2 cut(s)	476, 595
MroI	TCCGGA	1 cut(s)	363
MroNI	GCCGGC	2 cut(s)	476, 595
MseI	TTAA	1 cut(s)	539
MspI	CCGG	7 cut(s)	32, 321, 364, 373, 477, 557, 596
MspR9I	CCNGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	452, 571
MwoI	GCNNNNNNNGC	2 cut(s)	291, 393
NaeI	GCCGGC	2 cut(s)	478, 597
NciI	CCSGG	1 cut(s)	32
NgoMIV	GCCGGC	2 cut(s)	476, 595
NlaIV	GGNNCC	3 cut(s)	9, 371, 377
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 477, 596
PdiI	GCCGGC	2 cut(s)	478, 597
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	2 cut(s)	263, 571
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	8 cut(s)	184, 187, 307, 310, 443, 527, 530, 562
Ppu21I	YACGTR	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	9, 371, 377
PspPI	GGNCC	2 cut(s)	96, 375
PsyI	GACNNNGTC	2 cut(s)	263, 571
RsaI	GTAC	3 cut(s)	92, 464, 583
RsaNI	GTAC	3 cut(s)	91, 463, 582
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	8 cut(s)	183, 186, 306, 309, 442, 526, 529, 561
Sau96I	GGNCC	2 cut(s)	96, 375
ScaI	AGTACT	3 cut(s)	92, 464, 583
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	510
SgrAI	CRCCGGYG	2 cut(s)	476, 595
SinI	GGWCC	2 cut(s)	96, 375
Sse9I	AATT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	503, 622
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	502
TaiI	ACGT	4 cut(s)	264, 474, 522, 593
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	227
TatI	WGTACW	3 cut(s)	90, 462, 581
TauI	GCSGC	7 cut(s)	185, 188, 308, 311, 444, 531, 563
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TseI	GCWGC	1 cut(s)	525
Tth111I	GACNNNGTC	2 cut(s)	263, 571
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	96, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	503, 622
ZraI	GACGTC	3 cut(s)	262, 472, 591
ZrmI	AGTACT	3 cut(s)	92, 464, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.