Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0025498

Physical Location & Seq

Genomic Coordinates Reverse (-)

126333 .. 131880

Gene Structure 5548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

atgcaacaatccccttcccataagaaaagtgtagagcaagatacagacaagtttccgccaagttcgactgctccgatcgccgcgcaagctgtggaaatgtccaagaaagccgtcatcgtcggtggcctcagtgccaagccctcccttgggccccaattccacgtaaacgtggacgctttcttgaagatgcatggaagtatcattatccacagtaaacatagaaaactgtggcgcgtgcagatgaagctcgatcgcgacaagaaagtagccatgtacattggagaggaagacgtggcgcaagaggtccgcatcactggatgggggaaccatttggtctccaagaagagatatgtgttctcgattcctgggagccagaactggcctaatctgagagggtttgaaatcgcggatggctttaatctttctgctcaagtccacggtaatgggtttggccacctcctttggatcgaaaggaatgaggttgttagtgggacagagatcctcaatctctgggaaacgctctgcttttatcttcaagtgagagcaatttctgttaaggatgaagcagccattaggaggagcaatgatttcaatattcatctgaggcttgtccggggaatggcctatggtggtcttacttggttctgtcgatatgattatcaattcactaaagggatttttggggttgggcaagcagattatgaaggcgcacttgacatcctggtcgctgcgagtttaaatgatgtctaccataacctcagaagccagaatctgaaagtttatatccagctgaggaaaattgtaatgcgttgccttaatgcaaggtgtgaaaaggatgaagccttggatacgttgagtggtgttctgcaatttttactagattgccgtgagttttgcaagaaggttcccactgctaggagagtgtacctatctgatctaaattcacagaattggaaccctgtgcgaatttccaatgcagtggatgacgttgttgagattttgcgggagtggaaaaatggacatcctgctgttggcatgtctcgagaggcactgcgagcagagactgttcgccgcagagtgaagactacaggtttggtggaccatgttatatcaaaactaaagaatgtgatcgttgaaactgtacgagggttctttttgataagctgggaaatgaagctccataaatactcagtgatgtccattcctaatccatctctgctgccatctttagaaaaggttgaacacgatattgagtttgtgtacagagatattgtgcttcctagttggccggctaatgtggtgttaaggtctgtttacttcatgaaggagttcccacaataccgtgcaaagaatactctgtcatttacctgccaaataatgcctccctggaatgggtataaagagtattccaaggaaatcgctgacaagttacctcctcctattgtgctggcactttcacctcaagctactattttcgagctcaagaaggctgctgagaaagcattaagagagacatatataatcactcgaaatgtggaggttatggaagttaaatgtgaaggggatagcttggatgataatcagcttgtttctacaaatggatttggtagtaagctgggattgataggggggagaattgattctgatccaagcgtcagatatgaaggtggacaatacacaaaagtggttaagtgcatatgtgggactactgctgatgatggagaggacatgatacggtgtaatgtctgtcttacttgggagcacaagatgtgcaacggtgtagattcaaccgtgttggtgcatacatgtgtgtcatgcaagaaggggctacaagaccggaacaatagcatgattcgcatctgtcgcttgtcgagttgtcggcgtctcggggatttgcggagaaagaaggagaatcagagctgggctagacggcgccggagatcactcagtggctcggtgcgtcgatctatgaaggagaaagatggaggctcggtgtcgatcctgggcggcgtctcgatcggagcccgtttggtgtctcggcggctcggcctcacagctagggcggaggagagagctcagtttcgactttggaggaggagaggcgcctcttgtgcatttcagatcgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

709

Amino Acids

80.38

Weight (kDa)

9.51

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	318 - 382	7.6e-09	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	451 - 532	1.6e-13	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025498)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8450959.1_g000001 Rmu_sc0000907.1_g000026
rosa_samantha	Rh1DG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	1376
AccB1I	GGYRCC	2 cut(s)	1932, 2102
AccI	GTMKAC	1 cut(s)	747
AccII	CGCG	4 cut(s)	83, 234, 255, 407
AclWI	GGATC	4 cut(s)	473, 493, 1640, 1993
AcoI	YGGCCR	2 cut(s)	451, 1286
AcsI	RAATTY	2 cut(s)	940, 966
AcyI	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
AdeI	CACNNNGTG	1 cut(s)	1949
AfaI	GTAC	4 cut(s)	275, 926, 1143, 1262
AfiI	CCNNNNNNNGG	8 cut(s)	146, 147, 576, 619, 915, 1031, 1391, 1392
AflIII	ACRYGT	1 cut(s)	1805
AgsI	TTSAA	7 cut(s)	184, 401, 536, 592, 1136, 1241, 1788
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	4 cut(s)	364, 720, 1385, 2001
AleI	CACNNNNGTG	1 cut(s)	1682
Alw21I	GWGCWC	3 cut(s)	1482, 1764, 2077
Alw26I	GTCTC	7 cut(s)	340, 1044, 1055, 1505, 1889, 2017, 2040
AlwI	GGATC	4 cut(s)	473, 493, 1640, 1993
AlwNI	CAGNNNCTG	2 cut(s)	772, 1064
Ama87I	CYCGRG	2 cut(s)	1041, 1886
AoxI	GGCC	7 cut(s)	124, 149, 380, 451, 621, 1286, 2047
ApaI	GGGCCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	566, 728, 1219, 1490
ApoI	RAATTY	2 cut(s)	940, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	1075, 1107
Asp700I	GAANNNNTTC	2 cut(s)	1328, 1639
AspLEI	GCGC	6 cut(s)	85, 234, 298, 710, 1935, 2105
AspS9I	GGNCC	4 cut(s)	149, 150, 304, 1099
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	1449
AvaI	CYCGRG	2 cut(s)	1041, 1886
AvaII	GGWCC	2 cut(s)	304, 1099
BaeGI	GKGCMC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	1932, 2102
BanII	GRGCYC	4 cut(s)	153, 1482, 2026, 2077
BbsI	GAAGAC	2 cut(s)	294, 1088
Bbv12I	GWGCWC	3 cut(s)	1482, 1764, 2077
BbvCI	CCTCAGC	1 cut(s)	791
BbvI	GCAGC	4 cut(s)	578, 715, 1206, 1477
BccI	CCATC	6 cut(s)	312, 404, 1219, 1231, 1712, 1976
BceAI	ACGGC	3 cut(s)	95, 870, 1946
BciT130I	CCWGG	4 cut(s)	366, 722, 1387, 2003
BciVI	GTATCC	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	7 cut(s)	340, 1044, 1055, 1505, 1889, 2017, 2040
BfaI	CTAG	5 cut(s)	878, 915, 1281, 1926, 2058
BfmI	CTRYAG	1 cut(s)	1086
BfoI	RGCGCY	2 cut(s)	1936, 2106
BfuAI	ACCTGC	1 cut(s)	1376
BfuI	GTATCC	1 cut(s)	841
BisI	GCNGC	8 cut(s)	81, 567, 729, 1072, 1220, 1491, 2008, 2042
BlsI	GCNGC	8 cut(s)	82, 568, 730, 1073, 1221, 1492, 2009, 2043
Bme1390I	CCNGG	5 cut(s)	366, 614, 722, 1387, 2003
Bme18I	GGWCC	2 cut(s)	304, 1099
BmeT110I	CYCGRG	2 cut(s)	1041, 1886
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	4 cut(s)	149, 150, 304, 1099
BmiI	GGNNCC	9 cut(s)	151, 152, 326, 371, 906, 956, 1934, 2023, 2104
BmrFI	CCNGG	5 cut(s)	366, 614, 722, 1387, 2003
BmsI	GCATC	3 cut(s)	177, 318, 1866
BpiI	GAAGAC	2 cut(s)	294, 1088
Bpu10I	CCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	3 cut(s)	414, 1446, 1466
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	163
BsaBI	GATNNNNATC	3 cut(s)	1578, 1644, 1856
BsaHI	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	8 cut(s)	145, 365, 436, 613, 843, 1385, 1410, 2002
BsaWI	WCCGGW	1 cut(s)	1836
BsaXI	ACNNNNNCTCC	2 cut(s)	1977, 2007
Bsc4I	CCNNNNNNNGG	8 cut(s)	146, 147, 576, 619, 915, 1031, 1391, 1392
Bse118I	RCCGGY	1 cut(s)	1288
Bse1I	ACTGG	2 cut(s)	319, 383
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	3 cut(s)	1578, 1644, 1856
BseBI	CCWGG	4 cut(s)	366, 722, 1387, 2003
BseDI	CCNNGG	8 cut(s)	145, 365, 436, 613, 843, 1385, 1410, 2002
BseGI	GGATG	8 cut(s)	323, 415, 565, 717, 841, 988, 1021, 1579
BseJI	GATNNNNATC	3 cut(s)	1578, 1644, 1856
BseLI	CCNNNNNNNGG	8 cut(s)	146, 147, 576, 619, 915, 1031, 1391, 1392
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	9 cut(s)	142, 380, 593, 772, 782, 1203, 1485, 1960, 2090
BseNI	ACTGG	2 cut(s)	319, 383
BseRI	GAGGAG	5 cut(s)	592, 1425, 2081, 2107, 2110
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	578, 715, 1206, 1477
BseYI	CCCAGC	3 cut(s)	1164, 1615, 1920
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	4 cut(s)	83, 234, 255, 407
Bsh1285I	CGRYCG	3 cut(s)	78, 253, 2019
BshFI	GGCC	7 cut(s)	126, 151, 382, 453, 623, 1288, 2049
BshNI	GGYRCC	2 cut(s)	1932, 2102
BsiEI	CGRYCG	3 cut(s)	78, 253, 2019
BsiHKAI	GWGCWC	3 cut(s)	1482, 1764, 2077
BsiHKCI	CYCGRG	2 cut(s)	1041, 1886
BsiSI	CCGG	4 cut(s)	613, 1289, 1837, 1936
BslFI	GGGAC	2 cut(s)	505, 1717
BslI	CCNNNNNNNGG	8 cut(s)	146, 147, 576, 619, 915, 1031, 1391, 1392
BsmAI	GTCTC	7 cut(s)	340, 1044, 1055, 1505, 1889, 2017, 2040
BsmBI	CGTCTC	2 cut(s)	1889, 2017
BsmFI	GGGAC	2 cut(s)	505, 1717
BsnI	GGCC	7 cut(s)	126, 151, 382, 453, 623, 1288, 2049
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	2 cut(s)	1041, 1886
Bsp120I	GGGCCC	1 cut(s)	149
Bsp1286I	GDGCHC	5 cut(s)	153, 1482, 1764, 2026, 2077
Bsp1407I	TGTACA	2 cut(s)	273, 1260
Bsp68I	TCGCGA	1 cut(s)	255
BspANI	GGCC	7 cut(s)	126, 151, 382, 453, 623, 1288, 2049
BspCNI	CTCAG	9 cut(s)	141, 381, 594, 771, 783, 1202, 1486, 1959, 2089
BspFNI	CGCG	4 cut(s)	83, 234, 255, 407
BspHI	TCATGA	1 cut(s)	1320
BspLI	GGNNCC	9 cut(s)	151, 152, 326, 371, 906, 956, 1934, 2023, 2104
BspMI	ACCTGC	1 cut(s)	1376
BspPI	GGATC	4 cut(s)	473, 493, 1640, 1993
BspT107I	GGYRCC	2 cut(s)	1932, 2102
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	1288
BsrGI	TGTACA	2 cut(s)	273, 1260
BsrI	ACTGG	2 cut(s)	319, 383
BssAI	RCCGGY	1 cut(s)	1288
BssECI	CCNNGG	8 cut(s)	145, 365, 436, 613, 843, 1385, 1410, 2002
BssNI	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
BssT1I	CCWWGG	3 cut(s)	145, 843, 1410
Bst2UI	CCWGG	4 cut(s)	366, 722, 1387, 2003
Bst4CI	ACNGT	9 cut(s)	212, 228, 440, 1066, 1141, 1343, 1737, 1778, 1792
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
BstAUI	TGTACA	2 cut(s)	273, 1260
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	6 cut(s)	87, 236, 693, 1056, 1290, 1449
BstDEI	CTNAG	9 cut(s)	128, 389, 602, 758, 791, 1189, 1494, 1946, 2076
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	8 cut(s)	323, 415, 565, 717, 841, 988, 1021, 1579
BstFNI	CGCG	4 cut(s)	83, 234, 255, 407
BstH2I	RGCGCY	2 cut(s)	1936, 2106
BstHHI	GCGC	6 cut(s)	85, 234, 298, 710, 1935, 2105
BstMAI	GTCTC	7 cut(s)	340, 1044, 1055, 1505, 1889, 2017, 2040
BstMCI	CGRYCG	3 cut(s)	78, 253, 2019
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 86, 244, 1055, 1499, 1854, 1863, 2111
BstNI	CCWGG	4 cut(s)	366, 722, 1387, 2003
BstNSI	RCATGY	2 cut(s)	1039, 1809
BstSCI	CCNGG	5 cut(s)	364, 612, 720, 1385, 2001
BstSFI	CTRYAG	1 cut(s)	1086
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	4 cut(s)	83, 234, 255, 407
BstV1I	GCAGC	4 cut(s)	578, 715, 1206, 1477
BstV2I	GAAGAC	2 cut(s)	294, 1088
BstX2I	RGATCY	1 cut(s)	498
BstXI	CCANNNNNNTGG	2 cut(s)	443, 979
BstYI	RGATCY	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	7 cut(s)	126, 151, 382, 453, 623, 1288, 2049
BtgI	CCRYGG	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	8 cut(s)	323, 415, 565, 717, 841, 988, 1021, 1579
BtsI	GCAGTG	3 cut(s)	909, 984, 1049
BtsIMutI	CAGTG	7 cut(s)	136, 312, 909, 984, 1049, 1197, 1954
BtuMI	TCGCGA	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	1376
Cac8I	GCNNGC	6 cut(s)	87, 236, 693, 1056, 1290, 1449
CaiI	CAGNNNCTG	2 cut(s)	772, 1064
CciI	TCATGA	1 cut(s)	1320
CfoI	GCGC	6 cut(s)	85, 234, 298, 710, 1935, 2105
Cfr10I	RCCGGY	1 cut(s)	1288
Cfr13I	GGNCC	4 cut(s)	149, 150, 304, 1099
CseI	GACGC	5 cut(s)	182, 1642, 1871, 1949, 1999
Csp6I	GTAC	4 cut(s)	274, 925, 1142, 1261
CspCI	CAANNNNNGTGG	2 cut(s)	443, 478
CviAII	CATG	9 cut(s)	191, 271, 1036, 1103, 1321, 1729, 1806, 1815, 1849
CviQI	GTAC	4 cut(s)	274, 925, 1142, 1261
DdeI	CTNAG	9 cut(s)	128, 389, 602, 758, 791, 1189, 1494, 1946, 2076
DinI	GGCGCC	2 cut(s)	1934, 2104
DraI	TTTAAA	1 cut(s)	738
DraIII	CACNNNGTG	1 cut(s)	1949
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	2 cut(s)	451, 1286
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	2 cut(s)	45, 2078
Ecl136II	GAGCTC	2 cut(s)	1480, 2075
Eco130I	CCWWGG	3 cut(s)	145, 843, 1410
Eco24I	GRGCYC	4 cut(s)	153, 1482, 2026, 2077
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	304, 1099
Eco53kI	GAGCTC	2 cut(s)	1480, 2075
Eco88I	CYCGRG	2 cut(s)	1041, 1886
EcoICRI	GAGCTC	2 cut(s)	1480, 2075
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	4 cut(s)	364, 720, 1385, 2001
EcoT14I	CCWWGG	3 cut(s)	145, 843, 1410
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	4 cut(s)	153, 1482, 2026, 2077
EgeI	GGCGCC	2 cut(s)	1934, 2104
EheI	GGCGCC	2 cut(s)	1934, 2104
ErhI	CCWWGG	3 cut(s)	145, 843, 1410
Esp3I	CGTCTC	2 cut(s)	1889, 2017
FaeI	CATG	9 cut(s)	194, 274, 1039, 1106, 1324, 1732, 1809, 1818, 1852
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FaqI	GGGAC	2 cut(s)	505, 1717
FatI	CATG	9 cut(s)	190, 270, 1035, 1102, 1320, 1728, 1805, 1814, 1848
FauI	CCCGC	1 cut(s)	996
FauNDI	CATATG	1 cut(s)	1697
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	8 cut(s)	81, 567, 729, 1072, 1220, 1491, 2008, 2042
FokI	GGATG	8 cut(s)	330, 422, 572, 704, 848, 995, 1008, 1586
FriOI	GRGCYC	4 cut(s)	153, 1482, 2026, 2077
Fsp4HI	GCNGC	8 cut(s)	81, 567, 729, 1072, 1220, 1491, 2008, 2042
FspBI	CTAG	5 cut(s)	878, 915, 1281, 1926, 2058
GlaI	GCGC	6 cut(s)	84, 233, 297, 709, 1934, 2104
GluI	GCNGC	8 cut(s)	81, 567, 729, 1072, 1220, 1491, 2008, 2042
GsaI	CCCAGC	3 cut(s)	1168, 1619, 1924
HaeII	RGCGCY	2 cut(s)	1936, 2106
HaeIII	GGCC	7 cut(s)	126, 151, 382, 453, 623, 1288, 2049
HapII	CCGG	4 cut(s)	613, 1289, 1837, 1936
HgaI	GACGC	5 cut(s)	182, 1642, 1871, 1949, 1999
HhaI	GCGC	6 cut(s)	85, 234, 298, 710, 1935, 2105
Hin1I	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
Hin1II	CATG	9 cut(s)	194, 274, 1039, 1106, 1324, 1732, 1809, 1818, 1852
Hin6I	GCGC	6 cut(s)	83, 232, 296, 708, 1933, 2103
HinP1I	GCGC	6 cut(s)	83, 232, 296, 708, 1933, 2103
HinfI	GANTC	6 cut(s)	361, 769, 1640, 1784, 1852, 1912
HpaII	CCGG	4 cut(s)	613, 1289, 1837, 1936
HphI	GGTGA	1 cut(s)	1449
Hpy188III	TCNNGA	8 cut(s)	181, 254, 358, 1041, 1043, 1321, 1483, 2014
Hpy99I	CGWCG	2 cut(s)	122, 1965
HpyCH4III	ACNGT	9 cut(s)	212, 228, 440, 1066, 1141, 1343, 1737, 1778, 1792
HpyCH4IV	ACGT	5 cut(s)	162, 168, 291, 851, 987
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 86, 244, 1055, 1499, 1854, 1863, 2111
HpyF3I	CTNAG	9 cut(s)	128, 389, 602, 758, 791, 1189, 1494, 1946, 2076
HpySE526I	ACGT	5 cut(s)	162, 168, 291, 851, 987
Hsp92I	GRCGYC	4 cut(s)	1882, 1933, 2010, 2103
Hsp92II	CATG	9 cut(s)	194, 274, 1039, 1106, 1324, 1732, 1809, 1818, 1852
HspAI	GCGC	6 cut(s)	83, 232, 296, 708, 1933, 2103
KasI	GGCGCC	2 cut(s)	1932, 2102
KroI	GCCGGC	1 cut(s)	1288
KroNI	GCCGGC	1 cut(s)	1290
LmnI	GCTCC	6 cut(s)	76, 369, 579, 1182, 1759, 2021
Lsp1109I	GCAGC	4 cut(s)	578, 715, 1206, 1477
LweI	GCATC	3 cut(s)	177, 318, 1866
MaeI	CTAG	5 cut(s)	878, 915, 1281, 1926, 2058
MaeII	ACGT	5 cut(s)	162, 168, 291, 851, 987
MaeIII	GTNAC	1 cut(s)	1428
MboII	GAAGA	5 cut(s)	196, 299, 355, 524, 1093
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	5 cut(s)	153, 1482, 1764, 2026, 2077
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	9 cut(s)	155, 546, 662, 798, 869, 940, 949, 966, 1635
MluNI	TGGCCA	1 cut(s)	453
Mly113I	GGCGCC	2 cut(s)	1933, 2103
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	192
MroNI	GCCGGC	1 cut(s)	1288
MroXI	GAANNNNTTC	2 cut(s)	1328, 1639
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	8 cut(s)	417, 555, 737, 816, 1304, 1505, 1551, 1689
MslI	CAYNNNNRTG	3 cut(s)	441, 1682, 1806
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	4 cut(s)	613, 1289, 1837, 1936
MspR9I	CCNGG	5 cut(s)	366, 614, 722, 1387, 2003
MvaI	CCWGG	4 cut(s)	366, 722, 1387, 2003
MvnI	CGCG	4 cut(s)	83, 234, 255, 407
MwoI	GCNNNNNNNGC	8 cut(s)	77, 86, 244, 1055, 1499, 1854, 1863, 2111
NaeI	GCCGGC	1 cut(s)	1290
NarI	GGCGCC	2 cut(s)	1933, 2103
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	1697
NgoMIV	GCCGGC	1 cut(s)	1288
NlaIII	CATG	9 cut(s)	194, 274, 1039, 1106, 1324, 1732, 1809, 1818, 1852
NlaIV	GGNNCC	9 cut(s)	151, 152, 326, 371, 906, 956, 1934, 2023, 2104
NmeAIII	GCCGAG	2 cut(s)	2017, 2025
NruI	TCGCGA	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	2 cut(s)	1039, 1809
OliI	CACNNNNGTG	1 cut(s)	1682
PaeR7I	CTCGAG	1 cut(s)	1041
PagI	TCATGA	1 cut(s)	1320
PciI	ACATGT	1 cut(s)	1805
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	1290
PdmI	GAANNNNTTC	2 cut(s)	1328, 1639
PfeI	GAWTC	6 cut(s)	361, 769, 1640, 1784, 1852, 1912
PkrI	GCNGC	8 cut(s)	82, 568, 730, 1073, 1221, 1492, 2009, 2043
Ple19I	CGATCG	3 cut(s)	78, 253, 2019
PluTI	GGCGCC	2 cut(s)	1936, 2106
Ppu21I	YACGTR	1 cut(s)	163
PscI	ACATGT	1 cut(s)	1805
Psp124BI	GAGCTC	2 cut(s)	1482, 2077
Psp6I	CCWGG	4 cut(s)	364, 720, 1385, 2001
PspFI	CCCAGC	3 cut(s)	1164, 1615, 1920
PspGI	CCWGG	4 cut(s)	364, 720, 1385, 2001
PspN4I	GGNNCC	9 cut(s)	151, 152, 326, 371, 906, 956, 1934, 2023, 2104
PspOMI	GGGCCC	1 cut(s)	149
PspPI	GGNCC	4 cut(s)	149, 150, 304, 1099
PstNI	CAGNNNCTG	2 cut(s)	772, 1064
PsuI	RGATCY	1 cut(s)	498
PvuI	CGATCG	3 cut(s)	78, 253, 2019
PvuII	CAGCTG	1 cut(s)	790
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	4 cut(s)	275, 926, 1143, 1262
RsaNI	GTAC	4 cut(s)	274, 925, 1142, 1261
RseI	CAYNNNNRTG	3 cut(s)	441, 1682, 1806
SacI	GAGCTC	2 cut(s)	1482, 2077
SaqAI	TTAA	8 cut(s)	417, 555, 737, 816, 1304, 1505, 1551, 1689
SatI	GCNGC	8 cut(s)	81, 567, 729, 1072, 1220, 1491, 2008, 2042
Sau96I	GGNCC	4 cut(s)	149, 150, 304, 1099
ScrFI	CCNGG	5 cut(s)	366, 614, 722, 1387, 2003
SduI	GDGCHC	5 cut(s)	153, 1482, 1764, 2026, 2077
SfaNI	GCATC	3 cut(s)	177, 318, 1866
SfcI	CTRYAG	1 cut(s)	1086
SfoI	GGCGCC	2 cut(s)	1934, 2104
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	304, 1099
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	3 cut(s)	441, 1682, 1806
SmlI	CTYRAG	4 cut(s)	429, 1041, 1461, 1481
SmoI	CTYRAG	4 cut(s)	429, 1041, 1461, 1481
Sse9I	AATT	9 cut(s)	155, 546, 662, 798, 869, 940, 949, 966, 1635
SspDI	GGCGCC	2 cut(s)	1932, 2102
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	5 cut(s)	878, 915, 1281, 1926, 2058
SstI	GAGCTC	2 cut(s)	1482, 2077
StyD4I	CCNGG	5 cut(s)	364, 612, 720, 1385, 2001
StyI	CCWWGG	3 cut(s)	145, 843, 1410
TaaI	ACNGT	9 cut(s)	212, 228, 440, 1066, 1141, 1343, 1737, 1778, 1792
TaiI	ACGT	5 cut(s)	165, 171, 294, 854, 990
TasI	AATT	9 cut(s)	155, 546, 662, 798, 869, 940, 949, 966, 1635
TatI	WGTACW	2 cut(s)	273, 1260
TauI	GCSGC	4 cut(s)	83, 1074, 2010, 2044
TfiI	GAWTC	6 cut(s)	361, 769, 1640, 1784, 1852, 1912
Tru1I	TTAA	8 cut(s)	417, 555, 737, 816, 1304, 1505, 1551, 1689
Tru9I	TTAA	8 cut(s)	417, 555, 737, 816, 1304, 1505, 1551, 1689
TscAI	CASTG	7 cut(s)	136, 319, 916, 984, 1056, 1197, 1954
TseI	GCWGC	4 cut(s)	566, 728, 1219, 1490
TspRI	CASTG	7 cut(s)	136, 319, 916, 984, 1056, 1197, 1954
VpaK11BI	GGWCC	2 cut(s)	304, 1099
XapI	RAATTY	2 cut(s)	940, 966
XceI	RCATGY	2 cut(s)	1039, 1809
XhoI	CTCGAG	1 cut(s)	1041
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	1328, 1639
XspI	CTAG	5 cut(s)	878, 915, 1281, 1926, 2058
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.