Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0031104

Physical Location & Seq

Genomic Coordinates Forward (+)

134452 .. 134901

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ctgcttcgccttcagcggcccctccaaccgtccaacggcttcgtcggccgtcacttcttctgcctcaaggaagtccctaacataagcttcgactacagccacttcctttatcaatgggccttcgccatcgccgctgccggcatcacctccggctccatctccgagcacactcagtttgtcgcctacttaatctactcctccttcctcaaaggcttcgactaccccgccgcctcccactggatctggttcccagaaggctgggccagcgccttcaacaccaaccacgtcttgttcggatccggagtcatcgacttcgccgctttggggttgtccacatggtcggaggcatcgccggcctctgtggagcatttatcgaaagtcagagaatcggctggttcgacgattcgggtcgcctcacgaatttgtcaaggcctacgctgctcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

7.96

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031104)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000907.1_g000027
rosa_samantha	Rh1DG155900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	5 cut(s)	16, 132, 225, 228, 318
AclWI	GGATC	3 cut(s)	248, 291, 304
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
AgsI	TTSAA	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	248, 291, 304
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	6 cut(s)	17, 46, 117, 261, 354, 430
ApeKI	GCWGC	2 cut(s)	134, 438
ApoI	RAATTY	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	18, 117, 261
AsuHPI	GGTGA	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	121, 425
BccI	CCATC	2 cut(s)	134, 164
BceAI	ACGGC	2 cut(s)	33, 52
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
BlsI	GCNGC	6 cut(s)	18, 133, 136, 229, 319, 440
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	18, 117, 261
BmiI	GGNNCC	4 cut(s)	20, 154, 248, 298
BmsI	GCATC	2 cut(s)	150, 356
BpuEI	CTTGAG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 237, 324
Bse118I	RCCGGY	2 cut(s)	137, 352
Bse1I	ACTGG	1 cut(s)	242
BseAI	TCCGGA	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	187
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	121, 425
BseYI	CCCAGC	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	138, 150, 300, 353
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	240, 296
BspACI	CCGC	5 cut(s)	16, 132, 225, 228, 318
BspANI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	20, 154, 248, 298
BspPI	GGATC	3 cut(s)	248, 291, 304
BsrFI	RCCGGY	2 cut(s)	137, 352
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	137, 352
BssMI	GATC	2 cut(s)	240, 296
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	139, 265, 354
BstDEI	CTNAG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	243, 299
BstMBI	GATC	2 cut(s)	240, 296
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	121, 425
BstX2I	RGATCY	2 cut(s)	240, 296
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	2 cut(s)	240, 296
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BtgZI	GCGATG	2 cut(s)	112, 333
BtrI	CACGTC	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	139, 265, 354
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	137, 352
Cfr13I	GGNCC	3 cut(s)	18, 117, 261
CviAII	CATG	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	242, 298
DpnII	GATC	2 cut(s)	240, 296
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	46
FaeI	CATG	1 cut(s)	339
FaiI	YATR	2 cut(s)	83, 337
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	335
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
Fsp4HI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
GsaI	CCCAGC	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
HapII	CCGG	4 cut(s)	138, 150, 300, 353
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	303, 386, 403
HpaII	CCGG	4 cut(s)	138, 150, 300, 353
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	163, 296, 343, 383
Hpy188III	TCNNGA	2 cut(s)	300, 417
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	47, 403
HpyAV	CCTTC	5 cut(s)	20, 130, 211, 248, 280
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	339
HspAI	GCGC	1 cut(s)	267
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	2 cut(s)	137, 352
KroNI	GCCGGC	2 cut(s)	139, 354
Kzo9I	GATC	2 cut(s)	240, 296
LmnI	GCTCC	2 cut(s)	158, 364
Lsp1109I	GCAGC	2 cut(s)	121, 425
LweI	GCATC	2 cut(s)	150, 356
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	242, 298
MboI	GATC	2 cut(s)	240, 296
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	2 cut(s)	240, 296
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	3 cut(s)	49, 57, 321
MnlI	CCTC	9 cut(s)	32, 74, 157, 208, 215, 241, 337, 367, 424
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	137, 352
MseI	TTAA	2 cut(s)	188, 448
MspA1I	CMGCKG	2 cut(s)	16, 134
MspI	CCGG	4 cut(s)	138, 150, 300, 353
MwoI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
NaeI	GCCGGC	2 cut(s)	139, 354
NdeII	GATC	2 cut(s)	240, 296
NgoMIV	GCCGGC	2 cut(s)	137, 352
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	4 cut(s)	20, 154, 248, 298
NmuCI	GTSAC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdiI	GCCGGC	2 cut(s)	139, 354
PfeI	GAWTC	2 cut(s)	386, 403
PkrI	GCNGC	6 cut(s)	18, 133, 136, 229, 319, 440
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	20, 154, 248, 298
PspPI	GGNCC	3 cut(s)	18, 117, 261
PsuI	RGATCY	2 cut(s)	240, 296
SaqAI	TTAA	2 cut(s)	188, 448
SatI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
Sau3AI	GATC	2 cut(s)	240, 296
Sau96I	GGNCC	3 cut(s)	18, 117, 261
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	89, 149, 288
SfaNI	GCATC	2 cut(s)	150, 356
SfcI	CTRYAG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	5 cut(s)	16, 132, 225, 228, 318
StuI	AGGCCT	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	90, 216, 309, 374, 398
TasI	AATT	1 cut(s)	420
TauI	GCSGC	4 cut(s)	19, 134, 230, 320
TfiI	GAWTC	2 cut(s)	386, 403
Tru1I	TTAA	2 cut(s)	188, 448
Tru9I	TTAA	2 cut(s)	188, 448
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	134, 438
Tsp45I	GTSAC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.