Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0031104

Physical Location & Seq

Genomic Coordinates Forward (+)

32463893 .. 32465969

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG155900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAGAAAGAAAAGGGCAGGGCTGGTCAACCGCTTCAAATATACAGCATGGATTATGGCAATGGTTTGGAACTATACAAGGGGCTTTTCCCCAACCTATATAAGGGGTTGTTTCTCACAATTCGACCCAAGACCACGACCTTTTTACCTACTCTTGCAAACACACAAGACACTATATATCATCCATCTCTTCCTTTCTCGAGGGAAAACACCAACAACCGCACTTCTACTACCTCTTCCGCAGCTCTGCTTCGCCTTCAGCGGCCCCTCCAACCGTCCAACGGCTTCGTCGGCCGTCACTTCTTCTGCCTCAAGGAAGTCCCTAACATAAGCTTCGACTACAGCCACTTCCTTTATCAATGGGCCTTCGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGCACTCAGTTTGTCGCCTACTTAATCTACTCCTCCTTCCTCAAAGGCTTCGTCTACCCCGCCGCCTCCCACTGGATCTGGTTCCCAGAAGGCTGGGCCAGCGCCTTCAACACCAACCTCGTCTTGTTCGGATCCGGAGTCATCGACTTCGCCGCTTTGGGGTTGTCCACATGGTCGGAGGCATCGCCGGCCTCTGTGGAGCATTTATCGAAAGTCAGAGAATCGGCTGGTTCGACTATTCGGGTCGCCTCACGAATTTGTCAAGGCCTACGCTGCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

9.43

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	93 - 189	2.9e-20	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031104)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000907.1_g000027
rosa_samantha	Rh1DG155900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	545
AciI	CCGC	9 cut(s)	32, 220, 240, 262, 378, 381, 471, 474, 564
AclWI	GGATC	3 cut(s)	494, 537, 550
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	666
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	103, 281, 483, 570
AgsI	TTSAA	2 cut(s)	38, 520
AluBI	AGCT	2 cut(s)	245, 333
AluI	AGCT	2 cut(s)	245, 333
AlwI	GGATC	3 cut(s)	494, 537, 550
Ama87I	CYCGRG	1 cut(s)	199
Aor13HI	TCCGGA	1 cut(s)	545
AoxI	GGCC	6 cut(s)	263, 292, 363, 507, 600, 676
ApeKI	GCWGC	2 cut(s)	242, 684
ApoI	RAATTY	1 cut(s)	666
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AspLEI	GCGC	2 cut(s)	414, 515
AspS9I	GGNCC	3 cut(s)	264, 363, 507
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	254, 671
BccI	CCATC	3 cut(s)	193, 380, 410
BceAI	ACGGC	2 cut(s)	279, 298
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	7 cut(s)	243, 263, 378, 381, 474, 564, 685
BlsI	GCNGC	7 cut(s)	244, 264, 379, 382, 475, 565, 686
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	264, 363, 507
BmiI	GGNNCC	4 cut(s)	266, 400, 494, 544
BmsI	GCATC	2 cut(s)	396, 602
BpuEI	CTTGAG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 281, 483, 570
Bse118I	RCCGGY	2 cut(s)	383, 598
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	545
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	4 cut(s)	103, 281, 483, 570
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	433
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	254, 671
BseYI	CCCAGC	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	6 cut(s)	265, 294, 365, 509, 602, 678
BsiEI	CGRYCG	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	4 cut(s)	384, 396, 546, 599
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	4 cut(s)	103, 281, 483, 570
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	6 cut(s)	265, 294, 365, 509, 602, 678
BsoBI	CYCGRG	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	486, 542
BspACI	CCGC	9 cut(s)	32, 220, 240, 262, 378, 381, 471, 474, 564
BspANI	GGCC	6 cut(s)	265, 294, 365, 509, 602, 678
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	545
BspLI	GGNNCC	4 cut(s)	266, 400, 494, 544
BspPI	GGATC	3 cut(s)	494, 537, 550
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	2 cut(s)	383, 598
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	383, 598
BssMI	GATC	2 cut(s)	486, 542
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	195, 241
BstC8I	GCNNGC	3 cut(s)	385, 511, 600
BstDEI	CTNAG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	2 cut(s)	414, 515
BstKTI	GATC	2 cut(s)	489, 545
BstMBI	GATC	2 cut(s)	486, 542
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	291, 377, 510, 599, 684
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	254, 671
BstX2I	RGATCY	2 cut(s)	486, 542
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	2 cut(s)	486, 542
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	6 cut(s)	265, 294, 365, 509, 602, 678
BtgZI	GCGATG	3 cut(s)	358, 388, 579
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	385, 511, 600
CfoI	GCGC	2 cut(s)	414, 515
Cfr10I	RCCGGY	2 cut(s)	383, 598
Cfr13I	GGNCC	3 cut(s)	264, 363, 507
CviAII	CATG	2 cut(s)	49, 582
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	488, 544
DpnII	GATC	2 cut(s)	486, 542
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	195, 241
EarI	CTCTTC	2 cut(s)	195, 241
EclXI	CGGCCG	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	52, 585
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	48, 581
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	7 cut(s)	243, 263, 378, 381, 474, 564, 685
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	7 cut(s)	243, 263, 378, 381, 474, 564, 685
GlaI	GCGC	2 cut(s)	413, 514
GluI	GCNGC	7 cut(s)	243, 263, 378, 381, 474, 564, 685
GsaI	CCCAGC	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	6 cut(s)	265, 294, 365, 509, 602, 678
HapII	CCGG	4 cut(s)	384, 396, 546, 599
HhaI	GCGC	2 cut(s)	414, 515
Hin1II	CATG	2 cut(s)	52, 585
Hin6I	GCGC	2 cut(s)	412, 513
HinP1I	GCGC	2 cut(s)	412, 513
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	549, 632
HpaII	CCGG	4 cut(s)	384, 396, 546, 599
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	29, 466, 579
Hpy188I	TCNGA	3 cut(s)	542, 589, 629
Hpy188III	TCNNGA	3 cut(s)	199, 546, 663
Hpy8I	GTNNAC	3 cut(s)	29, 466, 579
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	5 cut(s)	266, 376, 457, 494, 526
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	4, 158
HpyF10VI	GCNNNNNNNGC	5 cut(s)	291, 377, 510, 599, 684
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	52, 585
HspAI	GCGC	2 cut(s)	412, 513
Kpn2I	TCCGGA	1 cut(s)	545
KroI	GCCGGC	2 cut(s)	383, 598
KroNI	GCCGGC	2 cut(s)	385, 600
Kzo9I	GATC	2 cut(s)	486, 542
LmnI	GCTCC	2 cut(s)	404, 610
Lsp1109I	GCAGC	2 cut(s)	254, 671
LweI	GCATC	2 cut(s)	396, 602
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	488, 544
MboI	GATC	2 cut(s)	486, 542
MboII	GAAGA	3 cut(s)	182, 228, 295
MflI	RGATCY	2 cut(s)	486, 542
MluCI	AATT	2 cut(s)	120, 666
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	3 cut(s)	295, 303, 567
MroI	TCCGGA	1 cut(s)	545
MroNI	GCCGGC	2 cut(s)	383, 598
MseI	TTAA	2 cut(s)	434, 694
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	4 cut(s)	384, 396, 546, 599
MwoI	GCNNNNNNNGC	5 cut(s)	291, 377, 510, 599, 684
NaeI	GCCGGC	2 cut(s)	385, 600
NdeII	GATC	2 cut(s)	486, 542
NgoMIV	GCCGGC	2 cut(s)	383, 598
NlaIII	CATG	2 cut(s)	52, 585
NlaIV	GGNNCC	4 cut(s)	266, 400, 494, 544
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	641
PdiI	GCCGGC	2 cut(s)	385, 600
PfeI	GAWTC	1 cut(s)	632
PkrI	GCNGC	7 cut(s)	244, 264, 379, 382, 475, 565, 686
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	504
PspN4I	GGNNCC	4 cut(s)	266, 400, 494, 544
PspPI	GGNCC	3 cut(s)	264, 363, 507
PsuI	RGATCY	2 cut(s)	486, 542
SaqAI	TTAA	2 cut(s)	434, 694
SatI	GCNGC	7 cut(s)	243, 263, 378, 381, 474, 564, 685
Sau3AI	GATC	2 cut(s)	486, 542
Sau96I	GGNCC	3 cut(s)	264, 363, 507
SchI	GAGTC	1 cut(s)	558
SetI	ASST	8 cut(s)	99, 143, 151, 236, 247, 335, 395, 531
SfaNI	GCATC	2 cut(s)	396, 602
SfcI	CTRYAG	1 cut(s)	340
Sfr274I	CTCGAG	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	199, 311
SmoI	CTYRAG	2 cut(s)	199, 311
Sse9I	AATT	2 cut(s)	120, 666
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	9 cut(s)	32, 220, 240, 262, 378, 381, 471, 474, 564
StuI	AGGCCT	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	6 cut(s)	124, 200, 336, 555, 620, 644
TasI	AATT	2 cut(s)	120, 666
TauI	GCSGC	5 cut(s)	265, 380, 383, 476, 566
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	2 cut(s)	434, 694
Tru9I	TTAA	2 cut(s)	434, 694
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	242, 684
Tsp45I	GTSAC	1 cut(s)	296
TspRI	CASTG	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	666
XhoI	CTCGAG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.