Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0031104

Physical Location & Seq

Genomic Coordinates Forward (+)

134452 .. 134901

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ctgcttcgccttcagcggcccctccaaccgtccaacggcttcgtcggccgtcacttcttctgcctcaaggaagtccctaacataagcttcgactacagccacttcctttatcaatgggccttcgccatcgccgctgccggcatcacctccggctccatctccgagcacactcagtttgtcgcctacttaatctactcctccttcctcaaaggcttcgactaccccgccgcctcccactggatctggttcccagaaggctgggccagcgccttcaacaccaaccacgtcttgttcggatccggagtcatcgacttcgccgctttggggttgtccacatggtcggaggcatcgccggcctctgtggagcatttatcgaaagtcagagaatcggctggttcgacgattcgggtcgcctcacgaatttgtcaaggcctacgctgctcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

7.96

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	11 - 106	4.4e-18	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031104)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000907.1_g000027
rosa_samantha	Rh1DG155900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	5 cut(s)	16, 132, 225, 228, 318
AclWI	GGATC	3 cut(s)	248, 291, 304
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
AgsI	TTSAA	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	248, 291, 304
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	6 cut(s)	17, 46, 117, 261, 354, 430
ApeKI	GCWGC	2 cut(s)	134, 438
ApoI	RAATTY	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	18, 117, 261
AsuHPI	GGTGA	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	121, 425
BccI	CCATC	2 cut(s)	134, 164
BceAI	ACGGC	2 cut(s)	33, 52
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
BlsI	GCNGC	6 cut(s)	18, 133, 136, 229, 319, 440
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	18, 117, 261
BmiI	GGNNCC	4 cut(s)	20, 154, 248, 298
BmsI	GCATC	2 cut(s)	150, 356
BpuEI	CTTGAG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 237, 324
Bse118I	RCCGGY	2 cut(s)	137, 352
Bse1I	ACTGG	1 cut(s)	242
BseAI	TCCGGA	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	187
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	121, 425
BseYI	CCCAGC	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	138, 150, 300, 353
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	35, 237, 324
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	240, 296
BspACI	CCGC	5 cut(s)	16, 132, 225, 228, 318
BspANI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	20, 154, 248, 298
BspPI	GGATC	3 cut(s)	248, 291, 304
BsrFI	RCCGGY	2 cut(s)	137, 352
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	137, 352
BssMI	GATC	2 cut(s)	240, 296
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	139, 265, 354
BstDEI	CTNAG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	243, 299
BstMBI	GATC	2 cut(s)	240, 296
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	121, 425
BstX2I	RGATCY	2 cut(s)	240, 296
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	2 cut(s)	240, 296
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
BtgZI	GCGATG	2 cut(s)	112, 333
BtrI	CACGTC	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	139, 265, 354
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	137, 352
Cfr13I	GGNCC	3 cut(s)	18, 117, 261
CviAII	CATG	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	242, 298
DpnII	GATC	2 cut(s)	240, 296
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	46
FaeI	CATG	1 cut(s)	339
FaiI	YATR	2 cut(s)	83, 337
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	335
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
Fsp4HI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
GsaI	CCCAGC	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	6 cut(s)	19, 48, 119, 263, 356, 432
HapII	CCGG	4 cut(s)	138, 150, 300, 353
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	303, 386, 403
HpaII	CCGG	4 cut(s)	138, 150, 300, 353
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	163, 296, 343, 383
Hpy188III	TCNNGA	2 cut(s)	300, 417
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	47, 403
HpyAV	CCTTC	5 cut(s)	20, 130, 211, 248, 280
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	339
HspAI	GCGC	1 cut(s)	267
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	2 cut(s)	137, 352
KroNI	GCCGGC	2 cut(s)	139, 354
Kzo9I	GATC	2 cut(s)	240, 296
LmnI	GCTCC	2 cut(s)	158, 364
Lsp1109I	GCAGC	2 cut(s)	121, 425
LweI	GCATC	2 cut(s)	150, 356
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	242, 298
MboI	GATC	2 cut(s)	240, 296
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	2 cut(s)	240, 296
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	3 cut(s)	49, 57, 321
MnlI	CCTC	9 cut(s)	32, 74, 157, 208, 215, 241, 337, 367, 424
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	137, 352
MseI	TTAA	2 cut(s)	188, 448
MspA1I	CMGCKG	2 cut(s)	16, 134
MspI	CCGG	4 cut(s)	138, 150, 300, 353
MwoI	GCNNNNNNNGC	5 cut(s)	45, 131, 264, 353, 438
NaeI	GCCGGC	2 cut(s)	139, 354
NdeII	GATC	2 cut(s)	240, 296
NgoMIV	GCCGGC	2 cut(s)	137, 352
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	4 cut(s)	20, 154, 248, 298
NmuCI	GTSAC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdiI	GCCGGC	2 cut(s)	139, 354
PfeI	GAWTC	2 cut(s)	386, 403
PkrI	GCNGC	6 cut(s)	18, 133, 136, 229, 319, 440
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	20, 154, 248, 298
PspPI	GGNCC	3 cut(s)	18, 117, 261
PsuI	RGATCY	2 cut(s)	240, 296
SaqAI	TTAA	2 cut(s)	188, 448
SatI	GCNGC	6 cut(s)	17, 132, 135, 228, 318, 439
Sau3AI	GATC	2 cut(s)	240, 296
Sau96I	GGNCC	3 cut(s)	18, 117, 261
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	89, 149, 288
SfaNI	GCATC	2 cut(s)	150, 356
SfcI	CTRYAG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	5 cut(s)	16, 132, 225, 228, 318
StuI	AGGCCT	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	90, 216, 309, 374, 398
TasI	AATT	1 cut(s)	420
TauI	GCSGC	4 cut(s)	19, 134, 230, 320
TfiI	GAWTC	2 cut(s)	386, 403
Tru1I	TTAA	2 cut(s)	188, 448
Tru9I	TTAA	2 cut(s)	188, 448
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	134, 438
Tsp45I	GTSAC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.