Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000913.1

Orthogroup ID

OG0031106

Physical Location & Seq

Genomic Coordinates Reverse (-)

45070 .. 47696

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000913.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atggcaactcatttgagcggaaggtttgcttttttaagaggaaaaccacagcagttagaagcaccgataagaaactcatgtaaaggatattctagggagacggtcccagatagtttcagaagcgagtccatgagttccaatggctggagaagaaattcttctcctgcatctggtatttctgttccaatcgtcaagtcttctaacaatcacatcttgtcctgctcaactcaaattgttaggaaattttttggaagatcctctgttaatggtatcccagaatcatttgcatctgcaggctctccagtgatagaggaaaaaaaaagtgcagacgtcgctgctccggcctcgatcgagcggcgacggcgcggcgcggcgcagcttgcaggagggaggccaggggtctgcggttggtggagtcgccggcgacgggttttgcggtgctgcacagaacatgcagttgcaggtgaggtggctgcccagaaacacgcaagcctgacctcgaacggggcccagaacagtctgggacacctcctgcaagccccgcgccgccgtcgcaacctggaagccgcctgttgcgtcgatgtccgcactttaccgatacggctggcgttggtggacgaggacatgctagtggcggaggacattcgagcagaggtggtacaggacatgctagtggaggaggacgttcgagcagaggtggtagaggacatggtggcgatggtgaacatggcggcaatggcggacatggttttcctcatattggtggaagaactgctcaccataatcgtacagagaaaagcagttcatccgatagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

272

Amino Acids

29.73

Weight (kDa)

9.27

Isoelectric Point (pI)

71.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031106)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000913.1_g000010
rosa_roxburghii	Rroxscaffold_5G00362150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	2 cut(s)	18, 355
AccII	CGCG	3 cut(s)	366, 371, 544
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	154, 242
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	660, 789
AfiI	CCNNNNNNNGG	5 cut(s)	144, 170, 427, 504, 760
AjnI	CCWGG	2 cut(s)	394, 558
AluBI	AGCT	2 cut(s)	379, 815
AluI	AGCT	2 cut(s)	379, 815
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	3 cut(s)	342, 392, 507
ApaI	GGGCCC	1 cut(s)	511
ApeKI	GCWGC	4 cut(s)	335, 376, 441, 473
ApoI	RAATTY	2 cut(s)	154, 242
Asp700I	GAANNNNTTC	2 cut(s)	154, 157
AspLEI	GCGC	4 cut(s)	366, 371, 376, 546
AspS9I	GGNCC	3 cut(s)	103, 507, 508
AsuHPI	GGTGA	3 cut(s)	476, 733, 769
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	322, 388, 428, 460
BccI	CCATC	1 cut(s)	712
BceAI	ACGGC	3 cut(s)	377, 534, 617
BciT130I	CCWGG	2 cut(s)	396, 560
BciVI	GTATCC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	93, 629, 671
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	396, 560
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	103, 507, 508
BmiI	GGNNCC	3 cut(s)	105, 508, 509
BmrFI	CCNGG	2 cut(s)	396, 560
BmsI	GCATC	2 cut(s)	176, 296
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	166, 285
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 170, 427, 504, 760
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	396, 560
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	805
BseLI	CCNNNNNNNGG	5 cut(s)	144, 170, 427, 504, 760
BseMI	GCAATG	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	4 cut(s)	322, 388, 428, 460
BsgI	GTGCAG	2 cut(s)	345, 427
Bsh1236I	CGCG	3 cut(s)	366, 371, 544
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	344, 394, 509
BsiEI	CGRYCG	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	341, 421
BslFI	GGGAC	2 cut(s)	89, 537
BslI	CCNNNNNNNGG	5 cut(s)	144, 170, 427, 504, 760
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	89, 537
BsnI	GGCC	3 cut(s)	344, 394, 509
Bsp120I	GGGCCC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	254, 348
BspANI	GGCC	3 cut(s)	344, 394, 509
BspFNI	CGCG	3 cut(s)	366, 371, 544
BspLI	GGNNCC	3 cut(s)	105, 508, 509
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	249
BsrBI	CCGCTC	2 cut(s)	18, 355
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	2 cut(s)	254, 348
BssNI	GRCGYC	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	396, 560
Bst4CI	ACNGT	2 cut(s)	103, 518
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	6 cut(s)	295, 381, 422, 490, 537, 606
BstF5I	GGATG	1 cut(s)	805
BstFNI	CGCG	3 cut(s)	366, 371, 544
BstHHI	GCGC	4 cut(s)	366, 371, 376, 546
BstKTI	GATC	2 cut(s)	257, 351
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	254, 348
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 341, 361, 380, 541, 552, 737
BstNI	CCWGG	2 cut(s)	396, 560
BstNSI	RCATGY	3 cut(s)	455, 628, 670
BstSCI	CCNGG	2 cut(s)	394, 558
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	3 cut(s)	366, 371, 544
BstV1I	GCAGC	4 cut(s)	322, 388, 428, 460
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	344, 394, 509
BtgZI	GCGATG	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	805
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	6 cut(s)	295, 381, 422, 490, 537, 606
CfoI	GCGC	4 cut(s)	366, 371, 376, 546
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	103, 507, 508
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	659, 788
CviAII	CATG	8 cut(s)	78, 130, 452, 625, 667, 709, 727, 745
CviQI	GTAC	2 cut(s)	659, 788
DpnI	GATC	2 cut(s)	256, 350
DpnII	GATC	2 cut(s)	254, 348
EciI	GGCGGA	2 cut(s)	650, 755
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	394, 558
EcoT38I	GRGCYC	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	8 cut(s)	81, 133, 455, 628, 670, 712, 730, 748
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 142, 174
FaqI	GGGAC	2 cut(s)	89, 537
FatI	CATG	8 cut(s)	77, 129, 451, 624, 666, 708, 726, 744
FauI	CCCGC	1 cut(s)	549
FokI	GGATG	1 cut(s)	792
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	3 cut(s)	93, 629, 671
GlaI	GCGC	4 cut(s)	365, 370, 375, 545
GsuI	CTGGAG	2 cut(s)	166, 285
HaeIII	GGCC	3 cut(s)	344, 394, 509
HapII	CCGG	2 cut(s)	341, 421
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	4 cut(s)	366, 371, 376, 546
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	8 cut(s)	81, 133, 455, 628, 670, 712, 730, 748
Hin6I	GCGC	4 cut(s)	364, 369, 374, 544
HinP1I	GCGC	4 cut(s)	364, 369, 374, 544
HinfI	GANTC	3 cut(s)	125, 278, 415
HpaII	CCGG	2 cut(s)	341, 421
HphI	GGTGA	3 cut(s)	476, 733, 769
Hpy166II	GTNNAC	2 cut(s)	616, 724
Hpy188I	TCNGA	2 cut(s)	119, 810
Hpy8I	GTNNAC	2 cut(s)	616, 724
Hpy99I	CGWCG	5 cut(s)	335, 363, 429, 555, 581
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	103, 518
HpyCH4IV	ACGT	2 cut(s)	330, 684
HpyCH4V	TGCA	9 cut(s)	167, 287, 293, 326, 383, 444, 455, 461, 535
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 341, 361, 380, 541, 552, 737
HpySE526I	ACGT	2 cut(s)	330, 684
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	8 cut(s)	81, 133, 455, 628, 670, 712, 730, 748
HspAI	GCGC	4 cut(s)	364, 369, 374, 544
KroI	GCCGGC	1 cut(s)	420
KroNI	GCCGGC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	254, 348
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	4 cut(s)	322, 388, 428, 460
LweI	GCATC	2 cut(s)	176, 296
MaeI	CTAG	3 cut(s)	93, 629, 671
MaeII	ACGT	2 cut(s)	330, 684
MalI	GATC	2 cut(s)	256, 350
MbiI	CCGCTC	2 cut(s)	18, 355
MboI	GATC	2 cut(s)	254, 348
MboII	GAAGA	5 cut(s)	150, 162, 189, 264, 779
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	154, 231, 242
MlyI	GAGTC	2 cut(s)	134, 424
MreI	CGCCGGCG	1 cut(s)	420
MroNI	GCCGGC	1 cut(s)	420
MroXI	GAANNNNTTC	2 cut(s)	154, 157
MseI	TTAA	2 cut(s)	35, 264
MslI	CAYNNNNRTG	3 cut(s)	629, 671, 761
MspI	CCGG	2 cut(s)	341, 421
MspR9I	CCNGG	2 cut(s)	396, 560
MteI	GCGCNGCGC	2 cut(s)	367, 372
MvaI	CCWGG	2 cut(s)	396, 560
MvnI	CGCG	3 cut(s)	366, 371, 544
MwoI	GCNNNNNNNGC	7 cut(s)	332, 341, 361, 380, 541, 552, 737
NaeI	GCCGGC	1 cut(s)	422
NdeII	GATC	2 cut(s)	254, 348
NgoMIV	GCCGGC	1 cut(s)	420
NlaIII	CATG	8 cut(s)	81, 133, 455, 628, 670, 712, 730, 748
NlaIV	GGNNCC	3 cut(s)	105, 508, 509
NspI	RCATGY	3 cut(s)	455, 628, 670
PaqCI	CACCTGC	1 cut(s)	452
PdiI	GCCGGC	1 cut(s)	422
PdmI	GAANNNNTTC	2 cut(s)	154, 157
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	2 cut(s)	133, 423
PpsI	GAGTC	2 cut(s)	133, 423
Psp6I	CCWGG	2 cut(s)	394, 558
PspGI	CCWGG	2 cut(s)	394, 558
PspN4I	GGNNCC	3 cut(s)	105, 508, 509
PspOMI	GGGCCC	1 cut(s)	507
PspPI	GGNCC	3 cut(s)	103, 507, 508
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	254
PvuI	CGATCG	1 cut(s)	351
RsaI	GTAC	2 cut(s)	660, 789
RsaNI	GTAC	2 cut(s)	659, 788
RseI	CAYNNNNRTG	3 cut(s)	629, 671, 761
SaqAI	TTAA	2 cut(s)	35, 264
Sau3AI	GATC	2 cut(s)	254, 348
Sau96I	GGNCC	3 cut(s)	103, 507, 508
SchI	GAGTC	2 cut(s)	134, 424
ScrFI	CCNGG	2 cut(s)	396, 560
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	176, 296
SfcI	CTRYAG	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	3 cut(s)	629, 671, 761
Sse9I	AATT	3 cut(s)	154, 231, 242
SspMI	CTAG	3 cut(s)	93, 629, 671
StyD4I	CCNGG	2 cut(s)	394, 558
TaaI	ACNGT	2 cut(s)	103, 518
TaiI	ACGT	2 cut(s)	333, 687
TaqI	TCGA	6 cut(s)	347, 351, 500, 579, 646, 688
TasI	AATT	3 cut(s)	154, 231, 242
TauI	GCSGC	6 cut(s)	358, 369, 374, 549, 569, 734
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	35, 264
Tru9I	TTAA	2 cut(s)	35, 264
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	4 cut(s)	335, 376, 441, 473
TspDTI	ATGAA	1 cut(s)	794
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	154, 242
XceI	RCATGY	3 cut(s)	455, 628, 670
XmnI	GAANNNNTTC	2 cut(s)	154, 157
XspI	CTAG	3 cut(s)	93, 629, 671
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.