Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0031106

Physical Location & Seq

Genomic Coordinates Reverse (-)

43013049 .. 43019511

Gene Structure 6463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAACTCATTTGAGCGGAAGGTTTGCTTTTTTAAGAGGAAAACCACAGCAGTTAGAAGCACCGATAAGAAACCCATGGAAAGGATATTCTAGGGAGATGGTCCCAGATAGTTTCAGAAGCGAGTCCATGAGTTCCAATCAAATTGTTAGGAAATTTTTTGGAAGATCCTCTGTTAATGGTATCCCAGAATCATTTGCATCTGCAGGCTCTCCAGTGATAGAGGAAAACAGCAGAGGTGCAGGTGGTGTTAACTATGGTGGGCTTGGCGGAATTTTCGGTTCACCTAGCCTCTTCCTGGCGTTGGTGGACGAGGACATGCTAGTGGCGGAGGACATTCGAGCAGAGGTGGTAGAGGACATGGTGGCAATGGTGAACATGGCGGCAATGGCGGACATGGTTTTCCTCATATTGGTGGAAGAACTGCTCACCATAATCGTACTGAGAAAAGCAGTTCATCCGATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

156

Amino Acids

16.93

Weight (kDa)

5.19

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031106)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000913.1_g000010
rosa_roxburghii	Rroxscaffold_5G00362150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	5 cut(s)	18, 270, 329, 383, 392
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	155, 273
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	4 cut(s)	83, 298, 304, 412
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
AlwI	GGATC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	155, 273
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	276, 385, 421
AvaII	GGWCC	1 cut(s)	103
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	93, 288, 323
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 298, 304, 412
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	375, 393
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	4 cut(s)	83, 298, 304, 412
BseMI	GCAATG	2 cut(s)	375, 393
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	4 cut(s)	83, 298, 304, 412
BsmFI	GGGAC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	167
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	5 cut(s)	18, 270, 329, 383, 392
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	375, 393
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	6 cut(s)	78, 130, 319, 361, 379, 397
CviJI	RGCY	4 cut(s)	210, 265, 291, 467
CviKI_1	RGCY	4 cut(s)	210, 265, 291, 467
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	3 cut(s)	285, 344, 407
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	6 cut(s)	81, 133, 322, 364, 382, 400
FaiI	YATR	9 cut(s)	79, 131, 258, 320, 362, 380, 398, 410, 434
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	6 cut(s)	77, 129, 318, 360, 378, 396
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	3 cut(s)	93, 288, 323
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	198
Hin1II	CATG	6 cut(s)	81, 133, 322, 364, 382, 400
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	125, 191
HpaI	GTTAAC	1 cut(s)	253
HphI	GGTGA	3 cut(s)	276, 385, 421
Hpy166II	GTNNAC	4 cut(s)	253, 284, 310, 376
Hpy188I	TCNGA	2 cut(s)	119, 462
Hpy8I	GTNNAC	4 cut(s)	253, 284, 310, 376
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	200, 206, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	6 cut(s)	81, 133, 322, 364, 382, 400
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	7 cut(s)	120, 192, 201, 228, 228, 284, 311
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	3 cut(s)	93, 288, 323
MalI	GATC	1 cut(s)	169
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	177, 286, 431
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	3 cut(s)	144, 155, 273
MlyI	GAGTC	1 cut(s)	134
MseI	TTAA	3 cut(s)	35, 177, 252
MslI	CAYNNNNRTG	2 cut(s)	323, 413
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	6 cut(s)	81, 133, 322, 364, 382, 400
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	2 cut(s)	323, 413
SaqAI	TTAA	3 cut(s)	35, 177, 252
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	6 cut(s)	26, 241, 247, 289, 351, 469
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	323, 413
Sse9I	AATT	3 cut(s)	144, 155, 273
SsiI	CCGC	5 cut(s)	18, 270, 329, 383, 392
SspMI	CTAG	3 cut(s)	93, 288, 323
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	144, 155, 273
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	35, 177, 252
Tru9I	TTAA	3 cut(s)	35, 177, 252
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	155, 273
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	3 cut(s)	93, 288, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.