Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000936.1

Orthogroup ID

OG0025481

Physical Location & Seq

Genomic Coordinates Reverse (-)

24687 .. 30660

Gene Structure 5974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000936.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgttaaaggcagaagagttattccactattcaagggtgacatgtacctttgtgcatgactacttgagaaagtttactgatgaaattatcactgcttgggtaacagactcagtgctggctcagagcaatgctagggactccatcaattttctccctaagcatgttgtgatagtgattatagaaaatgatcagaatgcaaaatttgcggtcactcagttctacacaatagcatcatttgattgttttattgcgattatcagttttggagtttctcgtacccctgagatggaaaagcaatgtgagaaggggtgctctaatgctcatatgtccgactcaacacaaggacatttgatactagcacttgaaacagctcacttcagagctgcaagtccatgggcattatggtttcatcacttcgcattacctgctgacaaaaaggaggatgttgtcggtaacatatttggtcgatgggaaggctctaatcgagagctttctatcgttgcaacaggttctcaaattgatgccattccatactctggcatcttacaagtcactacatctaagctgcgtcaatcatatagtgataattctcatcttgaaatcccagaagcacaagcactctatgtctgcaataggaagtgcattggtccaagttttgaaggctttgaagcacaagttacagacggcaaagttggtgattgcaacatcatctttggcgtcatcaacatgatgtacgccatccatggcgtcatagataaggactatgccagccctaggctaatggtagacggcggcggctccagaggcaacggcggcagtcacacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

5.74

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025481)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000410.1_g000006 Rmu_sc0000936.1_g000006 Rmu_sc0003624.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	786
AciI	CCGC	4 cut(s)	206, 792, 795, 813
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	717, 747
AfaI	GTAC	3 cut(s)	46, 277, 734
AfiI	CCNNNNNNNGG	3 cut(s)	286, 536, 774
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	33, 365, 599, 659, 668
AluBI	AGCT	4 cut(s)	371, 383, 490, 565
AluI	AGCT	4 cut(s)	371, 383, 490, 565
Alw21I	GWGCWC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	383, 565
ApoI	RAATTY	1 cut(s)	200
AspA2I	CCTAGG	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	49, 707
AvaII	GGWCC	1 cut(s)	647
AvrII	CCTAGG	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	370, 552
BccI	CCATC	4 cut(s)	149, 280, 462, 746
BceAI	ACGGC	3 cut(s)	700, 805, 826
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	3 cut(s)	132, 356, 774
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	5 cut(s)	384, 566, 793, 796, 814
BlnI	CCTAGG	1 cut(s)	773
BlsI	GCNGC	5 cut(s)	385, 567, 794, 797, 815
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	1 cut(s)	799
BmsI	GCATC	3 cut(s)	239, 511, 549
BpmI	CTGGAG	1 cut(s)	784
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	85
BsaHI	GRCGYC	2 cut(s)	717, 747
BsaJI	CCNNGG	3 cut(s)	392, 742, 773
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 536, 774
Bse3DI	GCAATG	2 cut(s)	133, 302
BseDI	CCNNGG	3 cut(s)	392, 742, 773
BseGI	GGATG	2 cut(s)	448, 738
BseLI	CCNNNNNNNGG	3 cut(s)	286, 536, 774
BseMI	GCAATG	2 cut(s)	133, 302
BseMII	CTCAG	4 cut(s)	123, 134, 227, 273
BseXI	GCAGC	2 cut(s)	370, 552
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	286, 536, 774
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	2 cut(s)	392, 742
BspACI	CCGC	4 cut(s)	206, 792, 795, 813
BspCNI	CTCAG	4 cut(s)	122, 133, 226, 274
BspLI	GGNNCC	1 cut(s)	799
BspMI	ACCTGC	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	133, 302
BssECI	CCNNGG	3 cut(s)	392, 742, 773
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	2 cut(s)	717, 747
BssT1I	CCWWGG	3 cut(s)	392, 742, 773
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	717, 747
BstAPI	GCANNNNNTGC	2 cut(s)	203, 425
BstC8I	GCNNGC	2 cut(s)	117, 769
BstDEI	CTNAG	7 cut(s)	109, 120, 156, 213, 282, 561, 825
BstDSI	CCRYGG	2 cut(s)	392, 742
BstF5I	GGATG	2 cut(s)	448, 738
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 425, 804, 813
BstNSI	RCATGY	2 cut(s)	45, 164
BstV1I	GCAGC	2 cut(s)	370, 552
BtgI	CCRYGG	2 cut(s)	392, 742
BtsCI	GGATG	2 cut(s)	448, 738
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 117
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	117, 769
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	3 cut(s)	557, 706, 736
Csp6I	GTAC	3 cut(s)	45, 276, 733
CviAII	CATG	6 cut(s)	42, 56, 161, 393, 727, 743
CviQI	GTAC	3 cut(s)	45, 276, 733
DdeI	CTNAG	7 cut(s)	109, 120, 156, 213, 282, 561, 825
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	3 cut(s)	392, 742, 773
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	392, 742, 773
ErhI	CCWWGG	3 cut(s)	392, 742, 773
FaeI	CATG	6 cut(s)	45, 59, 164, 396, 730, 746
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	6 cut(s)	41, 55, 160, 392, 726, 742
FauNDI	CATATG	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	384, 566, 793, 796, 814
FokI	GGATG	2 cut(s)	455, 725
Fsp4HI	GCNGC	5 cut(s)	384, 566, 793, 796, 814
FspBI	CTAG	3 cut(s)	132, 356, 774
GluI	GCNGC	5 cut(s)	384, 566, 793, 796, 814
GsuI	CTGGAG	1 cut(s)	784
HgaI	GACGC	3 cut(s)	557, 706, 736
Hin1I	GRCGYC	2 cut(s)	717, 747
Hin1II	CATG	6 cut(s)	45, 59, 164, 396, 730, 746
HinfI	GANTC	3 cut(s)	107, 137, 332
HphI	GGTGA	2 cut(s)	49, 707
Hpy166II	GTNNAC	2 cut(s)	75, 787
Hpy188I	TCNGA	4 cut(s)	123, 192, 331, 380
Hpy188III	TCNNGA	3 cut(s)	485, 596, 801
Hpy8I	GTNNAC	2 cut(s)	75, 787
HpyAV	CCTTC	3 cut(s)	298, 467, 653
HpyCH4V	TGCA	7 cut(s)	55, 197, 386, 503, 630, 642, 702
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 425, 804, 813
HpyF3I	CTNAG	7 cut(s)	109, 120, 156, 213, 282, 561, 825
Hsp92I	GRCGYC	2 cut(s)	717, 747
Hsp92II	CATG	6 cut(s)	45, 59, 164, 396, 730, 746
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	803
LpnPI	CCDG	8 cut(s)	101, 294, 438, 492, 522, 618, 781, 814
Lsp1109I	GCAGC	2 cut(s)	370, 552
LweI	GCATC	3 cut(s)	239, 511, 549
MaeI	CTAG	3 cut(s)	132, 356, 774
MaeIII	GTNAC	7 cut(s)	37, 100, 208, 452, 550, 676, 818
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	5 cut(s)	84, 145, 200, 516, 586
MlyI	GAGTC	3 cut(s)	101, 131, 326
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	2 cut(s)	433, 797
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	203, 425, 804, 813
NcoI	CCATGG	2 cut(s)	392, 742
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	6 cut(s)	45, 59, 164, 396, 730, 746
NlaIV	GGNNCC	1 cut(s)	799
NmuCI	GTSAC	4 cut(s)	37, 208, 550, 818
NspI	RCATGY	2 cut(s)	45, 164
PciI	ACATGT	1 cut(s)	41
PctI	GAATGC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	5 cut(s)	385, 567, 794, 797, 815
PleI	GAGTC	3 cut(s)	101, 131, 326
PpsI	GAGTC	3 cut(s)	101, 131, 326
PscI	ACATGT	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	799
PspPI	GGNCC	1 cut(s)	647
RsaI	GTAC	3 cut(s)	46, 277, 734
RsaNI	GTAC	3 cut(s)	45, 276, 733
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	5 cut(s)	384, 566, 793, 796, 814
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	3 cut(s)	101, 131, 326
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	7 cut(s)	50, 373, 385, 427, 492, 511, 567
SfaNI	GCATC	3 cut(s)	239, 511, 549
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	84, 145, 200, 516, 586
SsiI	CCGC	4 cut(s)	206, 792, 795, 813
SspMI	CTAG	3 cut(s)	132, 356, 774
StyI	CCWWGG	3 cut(s)	392, 742, 773
TaqI	TCGA	2 cut(s)	466, 484
TasI	AATT	5 cut(s)	84, 145, 200, 516, 586
TauI	GCSGC	3 cut(s)	795, 798, 816
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	97, 117
TseFI	GTSAC	4 cut(s)	37, 208, 550, 818
TseI	GCWGC	2 cut(s)	383, 565
Tsp45I	GTSAC	4 cut(s)	37, 208, 550, 818
TspDTI	ATGAA	2 cut(s)	96, 398
TspRI	CASTG	2 cut(s)	97, 117
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	45, 164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399
XmaJI	CCTAGG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	3 cut(s)	132, 356, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.