Rmu_sc0003624.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003624.1
OG0025481
Physical Location & Seq
Reverse (-)
16620 .. 17625
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003624.1_g000005.1.cds

Sequence Viewer

Length: 216 bp
atgaaaagggaggaggagaggatgggagaagagaatgagaaaagagagcagcccaaaggggctgcctctgtttttggttttttctcgtgccgccgttctaggggcgccatcaccatgatggacgccatccatggcgtcatggatagggactatgccagccctaggctggtggtggatcgcggcggtgccctaggcagtggcggcggtcatacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

7.96

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025481)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000410.1_g000006 Rmu_sc0000936.1_g000006 Rmu_sc0003624.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 104, 185
AccII CGCG 1 cut(s) 180
AciI CCGC 5 cut(s) 91, 180, 183, 201, 204
AclWI GGATC 1 cut(s) 183
AcyI GRCGYC 3 cut(s) 105, 123, 135
AfiI CCNNNNNNNGG 3 cut(s) 100, 162, 166
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 49, 62
AspA2I CCTAGG 2 cut(s) 161, 190
AspLEI GCGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 103
AvrII CCTAGG 2 cut(s) 161, 190
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 2 cut(s) 104, 185
BauI CACGAG 1 cut(s) 85
BbvI GCAGC 2 cut(s) 49, 61
BccI CCATC 4 cut(s) 16, 112, 116, 134
BceAI ACGGC 1 cut(s) 78
BfaI CTAG 3 cut(s) 99, 162, 191
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 5 cut(s) 50, 63, 91, 181, 202
BlnI CCTAGG 2 cut(s) 161, 190
BlsI GCNGC 5 cut(s) 51, 64, 92, 182, 203
BmiI GGNNCC 2 cut(s) 106, 187
BsaHI GRCGYC 3 cut(s) 105, 123, 135
BsaJI CCNNGG 3 cut(s) 130, 161, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 162, 166
BseDI CCNNGG 3 cut(s) 130, 161, 190
BseGI GGATG 2 cut(s) 27, 126
BseLI CCNNNNNNNGG 3 cut(s) 100, 162, 166
BseRI GAGGAG 2 cut(s) 26, 29
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 2 cut(s) 49, 61
Bsh1236I CGCG 1 cut(s) 180
BshNI GGYRCC 2 cut(s) 104, 185
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 100, 162, 166
BsmFI GGGAC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 5 cut(s) 91, 180, 183, 201, 204
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 106, 187
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 104, 185
BssECI CCNNGG 3 cut(s) 130, 161, 190
BssMI GATC 1 cut(s) 175
BssNI GRCGYC 3 cut(s) 105, 123, 135
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 3 cut(s) 130, 161, 190
Bst2BI CACGAG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 3 cut(s) 105, 123, 135
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 27, 126
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 190
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 49, 61
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 27, 126
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 107
CseI GACGC 2 cut(s) 124, 131
CviAII CATG 3 cut(s) 115, 131, 139
CviJI RGCY 4 cut(s) 52, 62, 159, 166
CviKI_1 RGCY 4 cut(s) 52, 62, 159, 166
DdeI CTNAG 1 cut(s) 213
DinI GGCGCC 1 cut(s) 106
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 3 cut(s) 130, 161, 190
EcoT14I CCWWGG 3 cut(s) 130, 161, 190
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 3 cut(s) 130, 161, 190
FaeI CATG 3 cut(s) 118, 134, 142
FaiI YATR 5 cut(s) 116, 132, 140, 153, 210
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 114, 130, 138
Fnu4HI GCNGC 5 cut(s) 50, 63, 91, 181, 202
FokI GGATG 2 cut(s) 34, 113
Fsp4HI GCNGC 5 cut(s) 50, 63, 91, 181, 202
FspBI CTAG 3 cut(s) 99, 162, 191
GlaI GCGC 1 cut(s) 106
GluI GCNGC 5 cut(s) 50, 63, 91, 181, 202
HaeII RGCGCY 1 cut(s) 108
HgaI GACGC 2 cut(s) 124, 131
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 3 cut(s) 105, 123, 135
Hin1II CATG 3 cut(s) 118, 134, 142
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HphI GGTGA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 3 cut(s) 105, 123, 135
Hsp92II CATG 3 cut(s) 118, 134, 142
HspAI GCGC 1 cut(s) 105
KasI GGCGCC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 152, 169
Lsp1109I GCAGC 2 cut(s) 49, 61
MaeI CTAG 3 cut(s) 99, 162, 191
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 190
Mly113I GGCGCC 1 cut(s) 105
MnlI CCTC 4 cut(s) 4, 7, 12, 76
MslI CAYNNNNRTG 2 cut(s) 113, 116
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 130
NdeII GATC 1 cut(s) 175
NlaIII CATG 3 cut(s) 118, 134, 142
NlaIV GGNNCC 2 cut(s) 106, 187
PkrI GCNGC 5 cut(s) 51, 64, 92, 182, 203
PluTI GGCGCC 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 106, 187
RseI CAYNNNNRTG 2 cut(s) 113, 116
SatI GCNGC 5 cut(s) 50, 63, 91, 181, 202
Sau3AI GATC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 190
SfoI GGCGCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 113, 116
SsiI CCGC 5 cut(s) 91, 180, 183, 201, 204
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 3 cut(s) 99, 162, 191
StyI CCWWGG 3 cut(s) 130, 161, 190
TauI GCSGC 3 cut(s) 93, 183, 204
TscAI CASTG 1 cut(s) 202
TseI GCWGC 2 cut(s) 49, 62
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 2 cut(s) 115, 163
XmaJI CCTAGG 2 cut(s) 161, 190
XspI CTAG 3 cut(s) 99, 162, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.