Rmu_sc0000951.1_g000004

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000951.1
OG0021075
Physical Location & Seq
Forward (+)
33017 .. 33451
435 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgtatcggcatatcacaaaccccggatggagcataggatggacatgggcgaagaaggaagtgatctggtccattgcgggagctcaagccaccaaccaaggagactgttccaaattcaaagttcaccaattgctgcaagagtggtgttttgggcctttggcttcattgggacaagacccttctggtgcagtctcagcatttcaggtcagtgttggcctttcaggcacttctaataaagcagtcacgcttcctaagaattttttcttgcttggtcctggaccaggctacacttgcagtgctgcaactattgtatcatccacagtttccttctcacctgatcgtcgttgtgtaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

118

Amino Acids

12.61

Weight (kDa)

9.07

Isoelectric Point (pI)

18.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 2 - 41 3.6e-15 COBRA-like protein
COBRA PF04833 51 - 115 1.5e-11 COBRA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021075)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13532
rosa_multiflora Rmu_co8312737.1_g000001 Rmu_sc0000951.1_g000004 Rmu_sc0000951.1_g000007 Rmu_sc0016134.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 113, 256
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 2 cut(s) 274, 280
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 96, 196
AoxI GGCC 2 cut(s) 152, 214
ApeKI GCWGC 2 cut(s) 133, 299
ApoI RAATTY 2 cut(s) 113, 256
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 69, 152, 272, 278
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 116, 324
AvaII GGWCC 3 cut(s) 69, 272, 278
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 120, 286
BccI CCATC 2 cut(s) 21, 33
BciT130I CCWGG 2 cut(s) 276, 282
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 96, 196
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 2 cut(s) 134, 300
BlsI GCNGC 2 cut(s) 135, 301
Bme1390I CCNGG 3 cut(s) 24, 276, 282
Bme18I GGWCC 3 cut(s) 69, 272, 278
BmgT120I GGNCC 4 cut(s) 69, 152, 272, 278
BmrFI CCNGG 3 cut(s) 24, 276, 282
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 22, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 276, 282
BseDI CCNNGG 2 cut(s) 22, 97
BseGI GGATG 3 cut(s) 32, 44, 314
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 120, 286
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 154, 216
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 96, 196
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 154, 216
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 63, 337
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 154, 216
BspCNI CTCAG 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 22, 97
BssMI GATC 2 cut(s) 63, 337
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 276, 282
Bst4CI ACNGT 2 cut(s) 107, 322
BstDEI CTNAG 2 cut(s) 193, 252
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 32, 44, 314
BstKTI GATC 2 cut(s) 66, 340
BstMAI GTCTC 2 cut(s) 96, 196
BstMBI GATC 2 cut(s) 63, 337
BstMWI GCNNNNNNNGC 3 cut(s) 194, 222, 291
BstNI CCWGG 2 cut(s) 276, 282
BstSCI CCNGG 3 cut(s) 22, 274, 280
BstV1I GCAGC 2 cut(s) 120, 286
BsuRI GGCC 2 cut(s) 154, 216
BtsCI GGATG 3 cut(s) 32, 44, 314
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 214, 301
Cfr13I GGNCC 4 cut(s) 69, 152, 272, 278
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 83, 89, 154, 161, 216, 285
CviKI_1 RGCY 6 cut(s) 83, 89, 154, 161, 216, 285
DdeI CTNAG 2 cut(s) 193, 252
DpnI GATC 2 cut(s) 65, 339
DpnII GATC 2 cut(s) 63, 337
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 3 cut(s) 69, 272, 278
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 274, 280
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 12, 35, 46
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 44
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 134, 300
FokI GGATG 3 cut(s) 39, 51, 301
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 134, 300
GluI GCNGC 2 cut(s) 134, 300
HaeIII GGCC 2 cut(s) 154, 216
HapII CCGG 1 cut(s) 24
Hin1II CATG 1 cut(s) 48
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 116, 324
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 3 cut(s) 49, 189, 337
HpyCH4III ACNGT 2 cut(s) 107, 322
HpyCH4V TGCA 4 cut(s) 136, 188, 294, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 222, 291
HpyF3I CTNAG 2 cut(s) 193, 252
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 63, 337
LmnI GCTCC 2 cut(s) 30, 80
Lsp1109I GCAGC 2 cut(s) 120, 286
MaeIII GTNAC 2 cut(s) 241, 349
MalI GATC 2 cut(s) 65, 339
MboI GATC 2 cut(s) 63, 337
MboII GAAGA 1 cut(s) 64
MfeI CAATTG 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 3 cut(s) 113, 128, 256
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 355
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 24, 276, 282
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 2 cut(s) 276, 282
MwoI GCNNNNNNNGC 3 cut(s) 194, 222, 291
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 63, 337
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 2 cut(s) 135, 301
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 274, 280
PspGI CCWGG 2 cut(s) 274, 280
PspPI GGNCC 4 cut(s) 69, 152, 272, 278
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 2 cut(s) 134, 300
Sau3AI GATC 2 cut(s) 63, 337
Sau96I GGNCC 4 cut(s) 69, 152, 272, 278
ScrFI CCNGG 3 cut(s) 24, 276, 282
SduI GDGCHC 1 cut(s) 85
SetI ASST 3 cut(s) 85, 207, 337
SinI GGWCC 3 cut(s) 69, 272, 278
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 113, 128, 256
SsiI CCGC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 3 cut(s) 22, 274, 280
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 107, 322
TasI AATT 3 cut(s) 113, 128, 256
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 2 cut(s) 214, 301
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 133, 299
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 214, 301
VpaK11BI GGWCC 3 cut(s) 69, 272, 278
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 2 cut(s) 113, 256
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.