Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000951.1

Orthogroup ID

OG0031107

Physical Location & Seq

Genomic Coordinates Forward (+)

37015 .. 39924

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000951.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtcagtggaggggtcttggagccagaatgccattcaagcgacaaatgcgtggctcagagaggggcttaaacaacggtgtatcaccagggatctgaagtggggggttccagttccacatgataacttcagggacaaggttttctatgtgtggtttgatgcgcctattggatatgtttcaattactaaatgctacactccagattgggagaaatggtggaagaatccagaggatgtggagttctccttgcattctctggcttacacccacttaacagtaatcggctcagttttaatagtgaggtttcttcccttttcctttcccttacaagctggaattagcaatgctgcagtaagtgaagagttgatcaccccacttgttcatatgaattgcttgggaacacaacagattggcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

139

Amino Acids

15.88

Weight (kDa)

6.04

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031107)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000951.1_g000006
rosa_wichuraiana	Rw7G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	112, 116
AgsI	TTSAA	2 cut(s)	38, 180
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	76, 361
BbvI	GCAGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	88
BclI	TGATCA	1 cut(s)	366
BfaI	CTAG	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	23, 108
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	70, 300
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	34, 250
Bsp143I	GATC	2 cut(s)	91, 366
BspCNI	CTCAG	2 cut(s)	69, 299
BspLI	GGNNCC	2 cut(s)	23, 108
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	91, 366
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	78, 277
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	56, 286
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	94, 369
BstMBI	GATC	2 cut(s)	91, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	12
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	24, 55, 67, 260, 285, 332
CviKI_1	RGCY	6 cut(s)	24, 55, 67, 260, 285, 332
DdeI	CTNAG	2 cut(s)	56, 286
DpnI	GATC	2 cut(s)	93, 368
DpnII	GATC	2 cut(s)	91, 366
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	112, 116
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	120, 147, 174, 384, 386
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	384
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	418
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	76, 361
Hpy188I	TCNGA	2 cut(s)	59, 96
Hpy188III	TCNNGA	2 cut(s)	200, 227
HpyCH4III	ACNGT	2 cut(s)	78, 277
HpyCH4V	TGCA	2 cut(s)	250, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	2 cut(s)	56, 286
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	91, 366
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	9 cut(s)	38, 73, 100, 115, 123, 213, 240, 242, 318
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	418
MalI	GATC	2 cut(s)	93, 368
MboI	GATC	2 cut(s)	91, 366
MboII	GAAGA	3 cut(s)	232, 299, 371
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	3 cut(s)	180, 336, 388
MnlI	CCTC	4 cut(s)	4, 55, 223, 294
MseI	TTAA	3 cut(s)	69, 272, 293
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	2 cut(s)	34, 250
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	91, 366
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	23, 108
PctI	GAATGC	2 cut(s)	34, 250
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	23, 108
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	69, 272, 293
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	91, 366
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	3 cut(s)	141, 305, 334
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	180, 336, 388
SspMI	CTAG	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	78, 277
TasI	AATT	3 cut(s)	180, 336, 388
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	69, 272, 293
Tru9I	TTAA	3 cut(s)	69, 272, 293
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	371, 401
TspRI	CASTG	1 cut(s)	12
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.