Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0031107

Physical Location & Seq

Genomic Coordinates Forward (+)

49917005 .. 49918411

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAGTGGAGGGGTCTTGGAGCCAGAATGCCATTCAAGCGACAAATGCGTGGCTCAGAGAGGGGCTTAAACAACGGTGTATCACCAGGGATCTGAAGTGGGGGGTTCCAGTTCCACATGATAACTTCAGGGACAAGGTTTTCTATGTGTGGTTTGATGCGCCTATTGGATATGTTTCAATTACTAAATGCTACACTCCAGATTGGGAGAAATGGTGGAAGAATCCAGAGGATGTGGAGTTGTATCAGTTTATGGGCAAAGATAATGTGCCATTCCACACTGATCTTGCATATTATCTGCTTAAAGAAGATGATTCCCCTTGCATCTTTAGGTCTATTGAGAAGCAGAGATGGTCATATGCATGTGCAAAGCAATTGATCGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

129

Amino Acids

15.35

Weight (kDa)

5.67

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	5 - 94	5.5e-35	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0031107)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000951.1_g000006
rosa_wichuraiana	Rw7G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	112, 116
AgsI	TTSAA	2 cut(s)	38, 180
AjnI	CCWGG	1 cut(s)	86
AlwI	GGATC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	76
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	23, 108
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	148, 333
BpmI	CTGGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	91, 283, 378
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	23, 108
BspPI	GGATC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	91, 283, 378
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	94, 286, 381
BstMBI	GATC	3 cut(s)	91, 283, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	12, 279
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	119, 363
CviJI	RGCY	4 cut(s)	24, 55, 67, 387
CviKI_1	RGCY	4 cut(s)	24, 55, 67, 387
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	3 cut(s)	93, 285, 380
DpnII	GATC	3 cut(s)	91, 283, 378
Eco57I	CTGAAG	2 cut(s)	112, 116
EcoRII	CCWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	364
FaeI	CATG	2 cut(s)	122, 366
FaiI	YATR	8 cut(s)	120, 147, 174, 254, 292, 358, 360, 364
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	118, 362
FauNDI	CATATG	1 cut(s)	358
FokI	GGATG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	122, 366
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	223, 314
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	59, 96
Hpy188III	TCNNGA	2 cut(s)	200, 227
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	290, 324, 362, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	122, 366
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	91, 283, 378
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	7 cut(s)	38, 73, 100, 115, 123, 213, 240
LweI	GCATC	2 cut(s)	148, 333
MalI	GATC	3 cut(s)	93, 285, 380
MboI	GATC	3 cut(s)	91, 283, 378
MboII	GAAGA	2 cut(s)	232, 320
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	2 cut(s)	180, 374
MnlI	CCTC	3 cut(s)	4, 55, 223
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	2 cut(s)	69, 303
MslI	CAYNNNNRTG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	91, 283, 378
NlaIII	CATG	2 cut(s)	122, 366
NlaIV	GGNNCC	2 cut(s)	23, 108
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	366
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	223, 314
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	23, 108
PsuI	RGATCY	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	69, 303
Sau3AI	GATC	3 cut(s)	91, 283, 378
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	2 cut(s)	141, 335
SfaNI	GCATC	2 cut(s)	148, 333
SmiMI	CAYNNNNRTG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	180, 374
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	180, 374
TfiI	GAWTC	2 cut(s)	223, 314
Tru1I	TTAA	2 cut(s)	69, 303
Tru9I	TTAA	2 cut(s)	69, 303
TscAI	CASTG	2 cut(s)	12, 286
TspRI	CASTG	2 cut(s)	12, 286
XceI	RCATGY	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.