Rmu_sc0000998.1_g000009

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0023060
Physical Location & Seq
Forward (+)
31224 .. 31511
288 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
atggtaactactagtagcgacttgatatttatcgatcgtgtcagacttgcttcaccaaatgggggtgcagagaaggattattcagataatctttctttttccagagatggatttgacaccgtagtgaaggataagcaagcagtcgaagcacaatgccccggtgttgtctcttgtgctcacattctggcacttgctgcccaagatgttgtagtcctagacaatgttttcaaaagcgaaggtgaaggcatcttattagtgcctcgcgaggcgagtgcctcaaggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

95

Amino Acids

10.15

Weight (kDa)

4.77

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 20 - 72 1.6e-10 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023060)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000998.1_g000009 Rmu_sc0016745.1_g000004 Rmu_sc0016745.1_g000005
rosa_samantha Rh2BG677600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 11
AleI CACNNNNGTG 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 45, 251
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 215
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 34
Bsp68I TCGCGA 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 138
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 146, 194
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 33
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 12, 215
GluI GCNGC 1 cut(s) 195
HapII CCGG 1 cut(s) 159
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 45, 251
Hpy188I TCNGA 2 cut(s) 44, 85
Hpy188III TCNNGA 2 cut(s) 102, 263
HpyAV CCTTC 4 cut(s) 67, 121, 230, 236
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 194
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 115, 170, 172
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 12, 215
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 178
MnlI CCTC 3 cut(s) 259, 270, 286
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 146, 194
NciI CCSGG 1 cut(s) 159
NdeII GATC 1 cut(s) 34
NruI TCGCGA 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 196
Ple19I CGATCG 1 cut(s) 37
PvuI CGATCG 1 cut(s) 37
RruI TCGCGA 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 122
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 178
SetI ASST 1 cut(s) 241
SfaNI GCATC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 11
SspMI CTAG 2 cut(s) 12, 215
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 33, 144
TseI GCWGC 1 cut(s) 194
XspI CTAG 2 cut(s) 12, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.